Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001600

Physical Location & Seq

Genomic Coordinates Forward (+)

30097408 .. 30100832

Gene Structure 3425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g38030.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGATGAAGAAGAGGATGAAGAAGACAATGAGGATGATGAACAAGATGGGGAAGTGGAAGAAGATGACAATGAGGATGAGGAAGAGAGTACTCTCACATTTAAAGATGGTGTTAATCCTTTGGATCTTGTGGAAGATGGTGCTTTTACTGACCAACTATATCAGAAATTTGTGTGGAATGGATTATGAGGCTCTAGCTGAGAAAAAGCGAAAAGCACTTGTTGATAACCGGCCTGGTGGTTCAGTAAAGAAGGTCAGGCAGGATGATCTTTCTGGAGCAAGTATGGAGGAAATTTTGGAGGCCATGAATTATGGTATGCAAAGGAGATCAAGGAAGCGTAAGAAAAAAGGGAGGCAGAAAGGATCAAGAAACAAGCTTACCCCTGAAATTACTCGATTGCTTGGTGATGCTACTTATCATTATGCCCTTGGCAATTTTGAAGAGGCCATACCCATCTTGTCTGAAGTTATTATGAAAGCACCACATTTACCTGATGCATATCACACGCTTGGACTGGTCCATCACGCTCTTGGTAATGAAAAGAAAGCCTTGAATTTTTACACAATTGCTGCACATTTAGCACCGAGAGATTCATCTCTATGGGAACTGCTTTTTGACTGGTTCAATACACGAGGTCAAACTCCAAGAGCTATTTATTGTATTTCAAGGGCAATAACAGCGGATCCTAAGAATTTAAATCTTAAATATTGCCGTGCTTCTCTGTATGTTAAGGTTGGAGATTACCAAAGAGCTGCCGCATCGTATGAACGTATTGTAAAAACTTGTCCTGATGATGTTGAAGCACTCAAGACAGGGGCAAATATGTACAAACTATGTGGTCAGCTTGAGCGTTCTGTTTATATTCTTGGGGAGTATCTCAAAAGTCATCCAACTGAACCTGAGTTGAGTGTCATTGATCTTTTAGCTTCCATGCTTATGCAAAATAATGCACACAGTGATGCTCTTCAGCATATTGAGCGTGCACAGTTAGTATCTTGTTCCAAAAAAGAGCTGCCTTTGGAAATGAAAGTTAAAGAAGGAATCTGCCATGCTTACCTTGGGAATTCGGAGAAGGCAGAAATGCTCTTTAGTGCTCTTGAACAAAAAAGTGCAGATCATGCTGAGTTGATTACTGAAGTTGCAGATTCATTCATGAGTCTAGAGCAATATAGTTCTGCATTGAAGTATTATTTGATGCTGAAAGGAACCGCAGACTCTAATAATGGTTTTTTGCATATAAAAATGGCTCGATGCTATCTATCCTTGAATGACAGAGTACAAGCAATTTCGTGCTTCTACTCAGCTCTGAAGGCACTCCAAAACAATATCGATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000127 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005654 GO:0005667 GO:0005730 GO:0006139 GO:0006351 GO:0006383 GO:0006399 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009303 GO:0009304 GO:0009987 GO:0010467 GO:0012505 GO:0016020 GO:0016070 GO:0016072 GO:0018130 GO:0019438 GO:0031090 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0034660 GO:0042791 GO:0042797 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044798 GO:0046483 GO:0070013 GO:0071704 GO:0090304 GO:0090576 GO:0097659 GO:0098781 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_19 TPR_8

Protein Analysis

446

Amino Acids

50.88

Weight (kDa)

9.5

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_9	PF13371	210 - 268	2.3e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17680 AT1G17680 AT1G17680
fragaria_vesca	FvH4_2g25610 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38050
malus_domestica	MD09G1155000.v1.1 MD17G1140900.v1.1 MD17G1141000.v1.1 MD17G1141100.v1.1
prunus_persica	Prupe.8G070000_v2.0.a1
pyrus_communis	pycom09g07370 pycom09g07380 pycom17g13410 pycom17g13440
rosa_chinensis	RchiOBHm_Chr2g0151071 RchiOBHm_Chr2g0151101 RchiOBHm_Chr6g0293861
rosa_laevigata	RLG00000011917 RLG00000020527 RLG00000020529
rosa_multiflora	Rmu_co8508109.1_g000001 Rmu_ssc0000470.1_g000002
rosa_roxburghii	Rroxscaffold_2G00096730 Rroxscaffold_7G00173850
rosa_rugosa	Rorug02G0424200 Rorug02G0424300 Rorug02G0424400 Rorug02G0424500 Rorug06G0238400
rosa_samantha	Rh2AG484900 Rh2BG497200 Rh2CG471000 Rh2DG508100 Rh6AG352000 Rh6BG358800 Rh6CG366100 Rh6CG366200 Rh6DG352800
rosa_wichuraiana	Rw2G039740 Rw6G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	680, 756, 1209
AclWI	GGATC	4 cut(s)	131, 370, 677, 690
AcsI	RAATTY	5 cut(s)	166, 291, 553, 691, 1063
AcuI	CTGAAG	4 cut(s)	483, 950, 1155, 1328
AdeI	CACNNNGTG	1 cut(s)	956
AfaI	GTAC	3 cut(s)	90, 827, 1278
AgsI	TTSAA	8 cut(s)	440, 553, 625, 666, 800, 1100, 1183, 1267
AjnI	CCWGG	1 cut(s)	232
AluBI	AGCT	8 cut(s)	197, 376, 650, 752, 844, 926, 1012, 1304
AluI	AGCT	8 cut(s)	197, 376, 650, 752, 844, 926, 1012, 1304
Alw21I	GWGCWC	2 cut(s)	985, 1096
Alw44I	GTGCAC	1 cut(s)	981
AlwI	GGATC	4 cut(s)	131, 370, 677, 690
AoxI	GGCC	3 cut(s)	230, 300, 444
ApaLI	GTGCAC	1 cut(s)	981
ApeKI	GCWGC	3 cut(s)	569, 752, 1012
ApoI	RAATTY	5 cut(s)	166, 291, 553, 691, 1063
AspS9I	GGNCC	1 cut(s)	517
AsuHPI	GGTGA	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	517
BaeGI	GKGCMC	1 cut(s)	985
BamHI	GGATCC	1 cut(s)	682
BarI	GAAGNNNNNNTAC	2 cut(s)	432, 464
BauI	CACGAG	1 cut(s)	630
BbsI	GAAGAC	1 cut(s)	29
Bbv12I	GWGCWC	2 cut(s)	985, 1096
BbvI	GCAGC	3 cut(s)	556, 739, 999
BccI	CCATC	5 cut(s)	40, 100, 130, 461, 528
BceAI	ACGGC	1 cut(s)	696
BciT130I	CCWGG	1 cut(s)	234
BfaI	CTAG	2 cut(s)	194, 1160
BisI	GCNGC	4 cut(s)	570, 753, 756, 1013
BlsI	GCNGC	4 cut(s)	571, 754, 757, 1014
BmcAI	AGTACT	1 cut(s)	90
Bme1390I	CCNGG	1 cut(s)	234
Bme18I	GGWCC	1 cut(s)	517
BmgT120I	GGNCC	1 cut(s)	517
BmiI	GGNNCC	2 cut(s)	684, 1207
BmrFI	CCNGG	1 cut(s)	234
BmsI	GCATC	7 cut(s)	397, 484, 767, 949, 1185, 1241, 1321
BpiI	GAAGAC	1 cut(s)	29
BpmI	CTGGAG	1 cut(s)	294
BpuEI	CTTGAG	2 cut(s)	791, 866
Bsa29I	ATCGAT	1 cut(s)	1329
BsaBI	GATNNNNATC	1 cut(s)	498
BsaJI	CCNNGG	2 cut(s)	427, 1057
Bse118I	RCCGGY	1 cut(s)	228
Bse1I	ACTGG	2 cut(s)	519, 623
Bse8I	GATNNNNATC	1 cut(s)	498
BseBI	CCWGG	1 cut(s)	234
BseCI	ATCGAT	1 cut(s)	1329
BseDI	CCNNGG	2 cut(s)	427, 1057
BseGI	GGATG	5 cut(s)	21, 39, 81, 268, 886
BseJI	GATNNNNATC	1 cut(s)	498
BseMII	CTCAG	4 cut(s)	189, 891, 1113, 1314
BseNI	ACTGG	2 cut(s)	519, 623
BseSI	GKGCMC	1 cut(s)	985
BseXI	GCAGC	3 cut(s)	556, 739, 999
BsgI	GTGCAG	2 cut(s)	555, 1131
BshFI	GGCC	3 cut(s)	232, 302, 446
BshVI	ATCGAT	1 cut(s)	1329
BsiHKAI	GWGCWC	2 cut(s)	985, 1096
BsiSI	CCGG	1 cut(s)	229
BsnI	GGCC	3 cut(s)	232, 302, 446
Bsp1286I	GDGCHC	2 cut(s)	985, 1096
Bsp1407I	TGTACA	1 cut(s)	825
Bsp143I	GATC	7 cut(s)	123, 265, 326, 362, 682, 916, 1114
BspACI	CCGC	3 cut(s)	680, 756, 1209
BspANI	GGCC	3 cut(s)	232, 302, 446
BspCNI	CTCAG	4 cut(s)	190, 892, 1114, 1313
BspDI	ATCGAT	1 cut(s)	1329
BspHI	TCATGA	1 cut(s)	1152
BspLI	GGNNCC	2 cut(s)	684, 1207
BspPI	GGATC	4 cut(s)	131, 370, 677, 690
BspQI	GCTCTTC	1 cut(s)	969
BsrFI	RCCGGY	1 cut(s)	228
BsrGI	TGTACA	1 cut(s)	825
BsrI	ACTGG	2 cut(s)	519, 623
BssAI	RCCGGY	1 cut(s)	228
BssECI	CCNNGG	2 cut(s)	427, 1057
BssMI	GATC	7 cut(s)	123, 265, 326, 362, 682, 916, 1114
BssSI	CACGAG	1 cut(s)	630
BssT1I	CCWWGG	2 cut(s)	427, 1057
Bst2BI	CACGAG	1 cut(s)	630
Bst2UI	CCWGG	1 cut(s)	234
Bst4CI	ACNGT	2 cut(s)	956, 987
Bst6I	CTCTTC	4 cut(s)	5, 77, 435, 969
BstAPI	GCANNNNNTGC	1 cut(s)	1118
BstAUI	TGTACA	1 cut(s)	825
BstC8I	GCNNGC	1 cut(s)	981
BstDEI	CTNAG	5 cut(s)	198, 687, 900, 1122, 1300
BstF5I	GGATG	5 cut(s)	21, 39, 81, 268, 886
BstKTI	GATC	7 cut(s)	126, 268, 329, 365, 685, 919, 1117
BstMBI	GATC	7 cut(s)	123, 265, 326, 362, 682, 916, 1114
BstMWI	GCNNNNNNNGC	5 cut(s)	578, 677, 976, 1118, 1310
BstNI	CCWGG	1 cut(s)	234
BstSCI	CCNGG	1 cut(s)	232
BstSLI	GKGCMC	1 cut(s)	985
BstV1I	GCAGC	3 cut(s)	556, 739, 999
BstV2I	GAAGAC	1 cut(s)	29
BstX2I	RGATCY	2 cut(s)	123, 682
BstYI	RGATCY	2 cut(s)	123, 682
Bsu15I	ATCGAT	1 cut(s)	1329
BsuRI	GGCC	3 cut(s)	232, 302, 446
BsuTUI	ATCGAT	1 cut(s)	1329
BtsCI	GGATG	5 cut(s)	21, 39, 81, 268, 886
BtsIMutI	CAGTG	1 cut(s)	961
Cac8I	GCNNGC	1 cut(s)	981
CciI	TCATGA	1 cut(s)	1152
Cfr10I	RCCGGY	1 cut(s)	228
Cfr13I	GGNCC	1 cut(s)	517
ClaI	ATCGAT	1 cut(s)	1329
Csp6I	GTAC	3 cut(s)	89, 826, 1277
CspCI	CAANNNNNGTGG	2 cut(s)	817, 852
CviAII	CATG	5 cut(s)	304, 931, 1049, 1118, 1153
CviQI	GTAC	3 cut(s)	89, 826, 1277
DdeI	CTNAG	5 cut(s)	198, 687, 900, 1122, 1300
DpnI	GATC	7 cut(s)	125, 267, 328, 364, 684, 918, 1116
DpnII	GATC	7 cut(s)	123, 265, 326, 362, 682, 916, 1114
DraI	TTTAAA	2 cut(s)	102, 696
DraIII	CACNNNGTG	1 cut(s)	956
Eam1104I	CTCTTC	4 cut(s)	5, 77, 435, 969
EarI	CTCTTC	4 cut(s)	5, 77, 435, 969
Eco130I	CCWWGG	2 cut(s)	427, 1057
Eco47I	GGWCC	1 cut(s)	517
Eco57I	CTGAAG	4 cut(s)	483, 950, 1155, 1328
EcoRI	GAATTC	1 cut(s)	1063
EcoRII	CCWGG	1 cut(s)	232
EcoT14I	CCWWGG	2 cut(s)	427, 1057
EcoT22I	ATGCAT	1 cut(s)	499
ErhI	CCWWGG	2 cut(s)	427, 1057
FaeI	CATG	5 cut(s)	307, 934, 1052, 1121, 1156
FalI	AAGNNNNNCTT	2 cut(s)	533, 565
FatI	CATG	5 cut(s)	303, 930, 1048, 1117, 1152
Fnu4HI	GCNGC	4 cut(s)	570, 753, 756, 1013
FokI	GGATG	5 cut(s)	28, 46, 88, 275, 873
Fsp4HI	GCNGC	4 cut(s)	570, 753, 756, 1013
FspBI	CTAG	2 cut(s)	194, 1160
GluI	GCNGC	4 cut(s)	570, 753, 756, 1013
GsuI	CTGGAG	1 cut(s)	294
HaeIII	GGCC	3 cut(s)	232, 302, 446
HapII	CCGG	1 cut(s)	229
Hin1II	CATG	5 cut(s)	307, 934, 1052, 1121, 1156
HindIII	AAGCTT	1 cut(s)	374
HinfI	GANTC	5 cut(s)	590, 1041, 1145, 1156, 1214
HpaII	CCGG	1 cut(s)	229
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	983
Hpy188I	TCNGA	4 cut(s)	164, 463, 1069, 1308
Hpy188III	TCNNGA	7 cut(s)	273, 366, 788, 808, 1097, 1153, 1160
Hpy8I	GTNNAC	1 cut(s)	983
HpyAV	CCTTC	4 cut(s)	244, 1031, 1066, 1303
HpyCH4III	ACNGT	2 cut(s)	956, 987
HpyCH4IV	ACGT	1 cut(s)	769
HpyF10VI	GCNNNNNNNGC	5 cut(s)	578, 677, 976, 1118, 1310
HpyF3I	CTNAG	5 cut(s)	198, 687, 900, 1122, 1300
HpySE526I	ACGT	1 cut(s)	769
Hsp92II	CATG	5 cut(s)	307, 934, 1052, 1121, 1156
Kzo9I	GATC	7 cut(s)	123, 265, 326, 362, 682, 916, 1114
LguI	GCTCTTC	1 cut(s)	969
LmnI	GCTCC	1 cut(s)	275
Lsp1109I	GCAGC	3 cut(s)	556, 739, 999
LweI	GCATC	7 cut(s)	397, 484, 767, 949, 1185, 1241, 1321
MaeI	CTAG	2 cut(s)	194, 1160
MaeII	ACGT	1 cut(s)	769
MalI	GATC	7 cut(s)	125, 267, 328, 364, 684, 918, 1116
MboI	GATC	7 cut(s)	123, 265, 326, 362, 682, 916, 1114
MfeI	CAATTG	1 cut(s)	564
MflI	RGATCY	2 cut(s)	123, 682
MhlI	GDGCHC	2 cut(s)	985, 1096
MlyI	GAGTC	2 cut(s)	1165, 1208
MmeI	TCCRAC	2 cut(s)	715, 914
Mph1103I	ATGCAT	1 cut(s)	499
MseI	TTAA	6 cut(s)	101, 113, 695, 702, 729, 1032
MslI	CAYNNNNRTG	3 cut(s)	598, 935, 957
MspA1I	CMGCKG	1 cut(s)	680
MspI	CCGG	1 cut(s)	229
MspR9I	CCNGG	1 cut(s)	234
MunI	CAATTG	1 cut(s)	564
MvaI	CCWGG	1 cut(s)	234
MwoI	GCNNNNNNNGC	5 cut(s)	578, 677, 976, 1118, 1310
NdeII	GATC	7 cut(s)	123, 265, 326, 362, 682, 916, 1114
NlaIII	CATG	5 cut(s)	307, 934, 1052, 1121, 1156
NlaIV	GGNNCC	2 cut(s)	684, 1207
NsiI	ATGCAT	1 cut(s)	499
PagI	TCATGA	1 cut(s)	1152
PciSI	GCTCTTC	1 cut(s)	969
PfeI	GAWTC	3 cut(s)	590, 1041, 1145
PkrI	GCNGC	4 cut(s)	571, 754, 757, 1014
PleI	GAGTC	2 cut(s)	1164, 1208
PpsI	GAGTC	2 cut(s)	1164, 1208
Psp6I	CCWGG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	232
PspN4I	GGNNCC	2 cut(s)	684, 1207
PspPI	GGNCC	1 cut(s)	517
PsuI	RGATCY	2 cut(s)	123, 682
RsaI	GTAC	3 cut(s)	90, 827, 1278
RsaNI	GTAC	3 cut(s)	89, 826, 1277
RseI	CAYNNNNRTG	3 cut(s)	598, 935, 957
SapI	GCTCTTC	1 cut(s)	969
SaqAI	TTAA	6 cut(s)	101, 113, 695, 702, 729, 1032
SatI	GCNGC	4 cut(s)	570, 753, 756, 1013
Sau3AI	GATC	7 cut(s)	123, 265, 326, 362, 682, 916, 1114
Sau96I	GGNCC	1 cut(s)	517
ScaI	AGTACT	1 cut(s)	90
SchI	GAGTC	2 cut(s)	1165, 1208
ScrFI	CCNGG	1 cut(s)	234
SduI	GDGCHC	2 cut(s)	985, 1096
SfaNI	GCATC	7 cut(s)	397, 484, 767, 949, 1185, 1241, 1321
SinI	GGWCC	1 cut(s)	517
SmiI	ATTTAAAT	1 cut(s)	696
SmiMI	CAYNNNNRTG	3 cut(s)	598, 935, 957
SmlI	CTYRAG	2 cut(s)	806, 845
SmoI	CTYRAG	2 cut(s)	806, 845
SsiI	CCGC	3 cut(s)	680, 756, 1209
SspI	AATATT	1 cut(s)	707
SspMI	CTAG	2 cut(s)	194, 1160
StyD4I	CCNGG	1 cut(s)	232
StyI	CCWWGG	2 cut(s)	427, 1057
SwaI	ATTTAAAT	1 cut(s)	696
TaaI	ACNGT	2 cut(s)	956, 987
TaiI	ACGT	1 cut(s)	772
TaqI	TCGA	3 cut(s)	394, 1249, 1329
TatI	WGTACW	3 cut(s)	88, 825, 1276
TauI	GCSGC	1 cut(s)	758
TfiI	GAWTC	3 cut(s)	590, 1041, 1145
Tru1I	TTAA	6 cut(s)	101, 113, 695, 702, 729, 1032
Tru9I	TTAA	6 cut(s)	101, 113, 695, 702, 729, 1032
TscAI	CASTG	1 cut(s)	961
TseI	GCWGC	3 cut(s)	569, 752, 1012
TspRI	CASTG	1 cut(s)	961
VneI	GTGCAC	1 cut(s)	981
VpaK11BI	GGWCC	1 cut(s)	517
XapI	RAATTY	5 cut(s)	166, 291, 553, 691, 1063
XbaI	TCTAGA	1 cut(s)	1159
XcmI	CCANNNNNNNNNTGG	2 cut(s)	527, 1055
XspI	CTAG	2 cut(s)	194, 1160
ZrmI	AGTACT	1 cut(s)	90
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.