Rh6CG366100

General transcription factor 3C polypeptide

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
Physical Location & Seq
Reverse (-)
55338648 .. 55339874
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG366100.1

Sequence Viewer

Length: 1227 bp
ATGCACAAGGAACTTGTGGATGCAATCTATGATTTGGTACACGAATCATTACAGATTATATCACTTGGGAGAACAGTGAAAAGGAAGCTCTTGAAAAAGGAATTGTTAGAAAGAGTCAAAGCCTTGGATGATCAGCAAACATGTAACGTTTTTTCGGGAAATAGATCACGAGCACTTCCTTTACCAGATCATCGGAAAGTTAACAGAGAAAAGAAGCGTCTTGAGGAAAAGGCAAAACTAAAGGAGGAAAAGAGAACTGAGGCAATGGCTGCTGGACATGACGGACAAAGTGATGATTATTCAGATTCAGATGATGATCCGGAAATTGATCCACAAGAAATACAGAAAGAGCCTCCCCTGCCGGATCTAGTCAAGGAAAAAGAGAATCATGACCTCATATTAGATTTGTGTAAGTCACTCGCTTCCTTGAATAGACATTCTGAAGCGTTAAAGATTCTTAAGCTTGCTTTGAAATCAAGTAAAGGCATGGCAGCTTTCCGTGGGAAACTTCGGACTCTTGGAGCTCAAATAGCATACACCAATCCGGATCCTGATCAGGGGTTGAACTATGTAAAATACATTGCAGACCAGCATCCATACAGCAATGCTGTCTGGAATTGCTATTACAAAGTAATCTCCAGATTTAAGGAGGATTGGTATCGTGACAAGCATTATAAATTTGTGCGCCACAGGCGCCATAGGCGCAACAAATTAAAAGACTGTGCACCACCCAGTATCATAAGTGGCCATCATTATACAAGAAAAAGTCGCCATCAGGATGCCGCAAGAGAATACCTTGAAGCTTATAAGTTATTGCCAGAGAATCCCCTGGTTAATCTGTGTGCTGGTACTGCCTTAATCAACTTGGCCCATGGACATAGACTTCAGAATAAGCACCACTGTATTGCTCAGGGCTTTGCATTCCTCTACAACAATTTGCGGGTTTGCAAAAGCAGCCAGGAGGCTTTGTACAACATAGCCAGGGCATTCCATCAAGTTGGCCTTGTGACTCTGGCAGCTTCCTACTACGAAAAAGTTCTTGACATTCATGTGAAGGACTACCCCATACCAAAACTTCCCCATGAAAATCCAGACTACAATCAAAATCGATTACCAGGTTACTGTGATCTTCGCAGAGAAGCAGCTTTTAATCTACATCTTATCTACAAACAGTGCGGATCATTTGATCTTGCTCGACAGGTCTTGAGAGATCACTGCACCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

408

Amino Acids

47.32

Weight (kDa)

9.15

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 675, 807
AccB1I GGYRCC 1 cut(s) 693
AccIII TCCGGA 2 cut(s) 319, 544
AciI CCGC 3 cut(s) 783, 940, 1176
AclI AACGTT 1 cut(s) 147
AclWI GGATC 6 cut(s) 311, 323, 372, 542, 555, 1186
AcoI YGGCCR 1 cut(s) 745
AcsI RAATTY 1 cut(s) 677
AcuI CTGAAG 2 cut(s) 462, 869
AcyI GRCGYC 1 cut(s) 694
AfaI GTAC 3 cut(s) 39, 850, 971
AfiI CCNNNNNNNGG 1 cut(s) 557
AflII CTTAAG 1 cut(s) 458
AflIII ACRYGT 1 cut(s) 140
AgsI TTSAA 5 cut(s) 94, 430, 472, 565, 800
AjnI CCWGG 4 cut(s) 828, 957, 980, 1114
AluBI AGCT 7 cut(s) 88, 463, 494, 524, 803, 1019, 1145
AluI AGCT 7 cut(s) 88, 463, 494, 524, 803, 1019, 1145
Alw21I GWGCWC 3 cut(s) 175, 526, 727
Alw44I GTGCAC 1 cut(s) 723
AlwI GGATC 6 cut(s) 311, 323, 372, 542, 555, 1186
Aor13HI TCCGGA 2 cut(s) 319, 544
AoxI GGCC 3 cut(s) 745, 867, 1000
ApaLI GTGCAC 1 cut(s) 723
ApeKI GCWGC 5 cut(s) 269, 491, 954, 1016, 1142
ApoI RAATTY 1 cut(s) 677
Asp700I GAANNNNTTC 1 cut(s) 1035
AspLEI GCGC 3 cut(s) 687, 696, 705
AspS9I GGNCC 1 cut(s) 868
BaeGI GKGCMC 1 cut(s) 727
BalI TGGCCA 1 cut(s) 747
BamHI GGATCC 1 cut(s) 547
BanI GGYRCC 1 cut(s) 693
BanII GRGCYC 1 cut(s) 526
BauI CACGAG 1 cut(s) 168
Bbv12I GWGCWC 3 cut(s) 175, 526, 727
BbvI GCAGC 5 cut(s) 256, 503, 966, 1028, 1154
BccI CCATC 3 cut(s) 756, 780, 999
BciT130I CCWGG 4 cut(s) 830, 959, 982, 1116
BclI TGATCA 2 cut(s) 130, 553
BfaI CTAG 1 cut(s) 368
BfoI RGCGCY 1 cut(s) 697
BfrI CTTAAG 1 cut(s) 458
BisI GCNGC 6 cut(s) 270, 492, 783, 955, 1017, 1143
BlsI GCNGC 6 cut(s) 271, 493, 784, 956, 1018, 1144
Bme1390I CCNGG 4 cut(s) 830, 959, 982, 1116
BmgT120I GGNCC 1 cut(s) 868
BmiI GGNNCC 2 cut(s) 549, 695
BmrFI CCNGG 4 cut(s) 830, 959, 982, 1116
BmrI ACTGGG 1 cut(s) 726
BmsI GCATC 3 cut(s) 10, 601, 769
BmuI ACTGGG 1 cut(s) 726
BpmI CTGGAG 1 cut(s) 622
Bpu10I CCTNAGC 1 cut(s) 909
BpuEI CTTGAG 2 cut(s) 242, 1225
Bsa29I ATCGAT 1 cut(s) 1108
BsaBI GATNNNNATC 3 cut(s) 315, 552, 657
BsaHI GRCGYC 1 cut(s) 694
BsaJI CCNNGG 5 cut(s) 123, 499, 828, 871, 981
BsaWI WCCGGW 2 cut(s) 319, 544
BsaXI ACNNNNNCTCC 4 cut(s) 641, 671, 953, 983
Bsc4I CCNNNNNNNGG 1 cut(s) 557
Bse1I ACTGG 1 cut(s) 732
Bse3DI GCAATG 3 cut(s) 270, 579, 610
Bse8I GATNNNNATC 3 cut(s) 315, 552, 657
BseAI TCCGGA 2 cut(s) 319, 544
BseBI CCWGG 4 cut(s) 830, 959, 982, 1116
BseCI ATCGAT 1 cut(s) 1108
BseDI CCNNGG 5 cut(s) 123, 499, 828, 871, 981
BseGI GGATG 4 cut(s) 25, 133, 592, 784
BseJI GATNNNNATC 3 cut(s) 315, 552, 657
BseLI CCNNNNNNNGG 1 cut(s) 557
BseMI GCAATG 3 cut(s) 270, 579, 610
BseMII CTCAG 2 cut(s) 249, 923
BseNI ACTGG 1 cut(s) 732
BseSI GKGCMC 1 cut(s) 727
BseXI GCAGC 5 cut(s) 256, 503, 966, 1028, 1154
BsgI GTGCAG 1 cut(s) 1201
BshFI GGCC 3 cut(s) 747, 869, 1002
BshNI GGYRCC 1 cut(s) 693
BshVI ATCGAT 1 cut(s) 1108
BsiHKAI GWGCWC 3 cut(s) 175, 526, 727
BsiSI CCGG 3 cut(s) 320, 362, 545
BslI CCNNNNNNNGG 1 cut(s) 557
BsmI GAATGC 2 cut(s) 920, 986
BsnI GGCC 3 cut(s) 747, 869, 1002
Bsp1286I GDGCHC 3 cut(s) 175, 526, 727
Bsp13I TCCGGA 2 cut(s) 319, 544
Bsp1407I TGTACA 1 cut(s) 969
Bsp19I CCATGG 1 cut(s) 871
BspACI CCGC 3 cut(s) 783, 940, 1176
BspANI GGCC 3 cut(s) 747, 869, 1002
BspCNI CTCAG 2 cut(s) 250, 922
BspDI ATCGAT 1 cut(s) 1108
BspEI TCCGGA 2 cut(s) 319, 544
BspHI TCATGA 1 cut(s) 388
BspLI GGNNCC 2 cut(s) 549, 695
BspPI GGATC 6 cut(s) 311, 323, 372, 542, 555, 1186
BspT107I GGYRCC 1 cut(s) 693
BspTI CTTAAG 1 cut(s) 458
BsrDI GCAATG 3 cut(s) 270, 579, 610
BsrGI TGTACA 1 cut(s) 969
BsrI ACTGG 1 cut(s) 732
BssECI CCNNGG 5 cut(s) 123, 499, 828, 871, 981
BssNI GRCGYC 1 cut(s) 694
BssSI CACGAG 1 cut(s) 168
BssT1I CCWWGG 2 cut(s) 123, 871
Bst2BI CACGAG 1 cut(s) 168
Bst2UI CCWGG 4 cut(s) 830, 959, 982, 1116
Bst4CI ACNGT 5 cut(s) 76, 722, 902, 1124, 1173
BstACI GRCGYC 1 cut(s) 694
BstAFI CTTAAG 1 cut(s) 458
BstAPI GCANNNNNTGC 1 cut(s) 269
BstAUI TGTACA 1 cut(s) 969
BstC8I GCNNGC 1 cut(s) 465
BstDEI CTNAG 2 cut(s) 258, 909
BstDSI CCRYGG 2 cut(s) 499, 871
BstF5I GGATG 4 cut(s) 25, 133, 592, 784
BstH2I RGCGCY 1 cut(s) 697
BstHHI GCGC 3 cut(s) 687, 696, 705
BstMWI GCNNNNNNNGC 9 cut(s) 269, 358, 530, 691, 693, 700, 702, 851, 954
BstNI CCWGG 4 cut(s) 830, 959, 982, 1116
BstNSI RCATGY 1 cut(s) 144
BstSCI CCNGG 4 cut(s) 828, 957, 980, 1114
BstSLI GKGCMC 1 cut(s) 727
BstV1I GCAGC 5 cut(s) 256, 503, 966, 1028, 1154
BstX2I RGATCY 2 cut(s) 364, 547
BstXI CCANNNNNNTGG 1 cut(s) 998
BstYI RGATCY 2 cut(s) 364, 547
Bsu15I ATCGAT 1 cut(s) 1108
BsuRI GGCC 3 cut(s) 747, 869, 1002
BsuTUI ATCGAT 1 cut(s) 1108
BtgI CCRYGG 2 cut(s) 499, 871
BtsCI GGATG 4 cut(s) 25, 133, 592, 784
BtsI GCAGTG 1 cut(s) 1213
BtsIMutI CAGTG 4 cut(s) 81, 898, 1178, 1213
Cac8I GCNNGC 1 cut(s) 465
CciI TCATGA 1 cut(s) 388
CfoI GCGC 3 cut(s) 687, 696, 705
Cfr13I GGNCC 1 cut(s) 868
ClaI ATCGAT 1 cut(s) 1108
CseI GACGC 1 cut(s) 206
CsiI ACCWGGT 1 cut(s) 1114
Csp6I GTAC 3 cut(s) 38, 849, 970
CviAII CATG 7 cut(s) 141, 278, 389, 487, 872, 1049, 1082
CviQI GTAC 3 cut(s) 38, 849, 970
DdeI CTNAG 2 cut(s) 258, 909
DinI GGCGCC 1 cut(s) 695
EaeI YGGCCR 1 cut(s) 745
Ecl136II GAGCTC 1 cut(s) 524
Eco130I CCWWGG 2 cut(s) 123, 871
Eco24I GRGCYC 1 cut(s) 526
Eco53kI GAGCTC 1 cut(s) 524
Eco57I CTGAAG 2 cut(s) 462, 869
EcoICRI GAGCTC 1 cut(s) 524
EcoRII CCWGG 4 cut(s) 828, 957, 980, 1114
EcoT14I CCWWGG 2 cut(s) 123, 871
EcoT38I GRGCYC 1 cut(s) 526
EgeI GGCGCC 1 cut(s) 695
EheI GGCGCC 1 cut(s) 695
ErhI CCWWGG 2 cut(s) 123, 871
FaeI CATG 7 cut(s) 144, 281, 392, 490, 875, 1052, 1085
FalI AAGNNNNNCTT 2 cut(s) 987, 1019
FatI CATG 7 cut(s) 140, 277, 388, 486, 871, 1048, 1081
FauI CCCGC 1 cut(s) 933
FbaI TGATCA 2 cut(s) 130, 553
Fnu4HI GCNGC 6 cut(s) 270, 492, 783, 955, 1017, 1143
FokI GGATG 4 cut(s) 32, 140, 579, 791
FriOI GRGCYC 1 cut(s) 526
Fsp4HI GCNGC 6 cut(s) 270, 492, 783, 955, 1017, 1143
FspBI CTAG 1 cut(s) 368
GlaI GCGC 3 cut(s) 686, 695, 704
GluI GCNGC 6 cut(s) 270, 492, 783, 955, 1017, 1143
GsuI CTGGAG 1 cut(s) 622
HaeII RGCGCY 1 cut(s) 697
HaeIII GGCC 3 cut(s) 747, 869, 1002
HapII CCGG 3 cut(s) 320, 362, 545
HgaI GACGC 1 cut(s) 206
HhaI GCGC 3 cut(s) 687, 696, 705
Hin1I GRCGYC 1 cut(s) 694
Hin1II CATG 7 cut(s) 144, 281, 392, 490, 875, 1052, 1085
Hin6I GCGC 3 cut(s) 685, 694, 703
HinP1I GCGC 3 cut(s) 685, 694, 703
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 2 cut(s) 461, 801
HinfI GANTC 8 cut(s) 44, 114, 305, 385, 454, 514, 823, 1009
HpaI GTTAAC 1 cut(s) 202
HpaII CCGG 3 cut(s) 320, 362, 545
Hpy166II GTNNAC 3 cut(s) 40, 202, 725
Hpy188I TCNGA 6 cut(s) 195, 304, 310, 442, 513, 888
Hpy8I GTNNAC 3 cut(s) 40, 202, 725
HpyAV CCTTC 1 cut(s) 1048
HpyCH4III ACNGT 5 cut(s) 76, 722, 902, 1124, 1173
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 7 cut(s) 4, 23, 584, 725, 920, 948, 1218
HpyF10VI GCNNNNNNNGC 9 cut(s) 269, 358, 530, 691, 693, 700, 702, 851, 954
HpyF3I CTNAG 2 cut(s) 258, 909
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 1 cut(s) 694
Hsp92II CATG 7 cut(s) 144, 281, 392, 490, 875, 1052, 1085
HspAI GCGC 3 cut(s) 685, 694, 703
KasI GGCGCC 1 cut(s) 693
Kpn2I TCCGGA 2 cut(s) 319, 544
Ksp22I TGATCA 2 cut(s) 130, 553
KspAI GTTAAC 1 cut(s) 202
LmnI GCTCC 1 cut(s) 521
Lsp1109I GCAGC 5 cut(s) 256, 503, 966, 1028, 1154
LweI GCATC 3 cut(s) 10, 601, 769
MabI ACCWGGT 1 cut(s) 1114
MaeI CTAG 1 cut(s) 368
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 5 cut(s) 143, 414, 662, 1006, 1118
MboII GAAGA 1 cut(s) 1121
MflI RGATCY 2 cut(s) 364, 547
MhlI GDGCHC 3 cut(s) 175, 526, 727
MlsI TGGCCA 1 cut(s) 747
MluCI AATT 6 cut(s) 101, 324, 616, 677, 710, 934
MluNI TGGCCA 1 cut(s) 747
Mly113I GGCGCC 1 cut(s) 694
MlyI GAGTC 3 cut(s) 123, 508, 1003
MnlI CCTC 8 cut(s) 217, 238, 253, 363, 404, 643, 935, 955
Mox20I TGGCCA 1 cut(s) 747
MroI TCCGGA 2 cut(s) 319, 544
MroXI GAANNNNTTC 1 cut(s) 1035
MscI TGGCCA 1 cut(s) 747
MseI TTAA 8 cut(s) 201, 449, 459, 645, 713, 834, 857, 1149
MslI CAYNNNNRTG 2 cut(s) 777, 1049
Msp20I TGGCCA 1 cut(s) 747
MspCI CTTAAG 1 cut(s) 458
MspI CCGG 3 cut(s) 320, 362, 545
MspR9I CCNGG 4 cut(s) 830, 959, 982, 1116
Mva1269I GAATGC 2 cut(s) 920, 986
MvaI CCWGG 4 cut(s) 830, 959, 982, 1116
MwoI GCNNNNNNNGC 9 cut(s) 269, 358, 530, 691, 693, 700, 702, 851, 954
NarI GGCGCC 1 cut(s) 694
NcoI CCATGG 1 cut(s) 871
NlaIII CATG 7 cut(s) 144, 281, 392, 490, 875, 1052, 1085
NlaIV GGNNCC 2 cut(s) 549, 695
NmuCI GTSAC 3 cut(s) 414, 662, 1006
NspI RCATGY 1 cut(s) 144
PagI TCATGA 1 cut(s) 388
PciI ACATGT 1 cut(s) 140
PctI GAATGC 2 cut(s) 920, 986
PdmI GAANNNNTTC 1 cut(s) 1035
PfeI GAWTC 5 cut(s) 44, 305, 385, 454, 823
PkrI GCNGC 6 cut(s) 271, 493, 784, 956, 1018, 1144
PleI GAGTC 3 cut(s) 122, 508, 1003
PluTI GGCGCC 1 cut(s) 697
PpsI GAGTC 3 cut(s) 122, 508, 1003
PscI ACATGT 1 cut(s) 140
PsiI TTATAA 2 cut(s) 675, 807
Psp124BI GAGCTC 1 cut(s) 526
Psp1406I AACGTT 1 cut(s) 147
Psp6I CCWGG 4 cut(s) 828, 957, 980, 1114
PspGI CCWGG 4 cut(s) 828, 957, 980, 1114
PspN4I GGNNCC 2 cut(s) 549, 695
PspPI GGNCC 1 cut(s) 868
PsuI RGATCY 2 cut(s) 364, 547
RsaI GTAC 3 cut(s) 39, 850, 971
RsaNI GTAC 3 cut(s) 38, 849, 970
RseI CAYNNNNRTG 2 cut(s) 777, 1049
SacI GAGCTC 1 cut(s) 526
SaqAI TTAA 8 cut(s) 201, 449, 459, 645, 713, 834, 857, 1149
SatI GCNGC 6 cut(s) 270, 492, 783, 955, 1017, 1143
Sau96I GGNCC 1 cut(s) 868
SchI GAGTC 3 cut(s) 123, 508, 1003
ScrFI CCNGG 4 cut(s) 830, 959, 982, 1116
SduI GDGCHC 3 cut(s) 175, 526, 727
SexAI ACCWGGT 1 cut(s) 1114
SfaNI GCATC 3 cut(s) 10, 601, 769
SfoI GGCGCC 1 cut(s) 695
SmiMI CAYNNNNRTG 2 cut(s) 777, 1049
SmlI CTYRAG 3 cut(s) 221, 458, 1204
SmoI CTYRAG 3 cut(s) 221, 458, 1204
Sse9I AATT 6 cut(s) 101, 324, 616, 677, 710, 934
SsiI CCGC 3 cut(s) 783, 940, 1176
SspDI GGCGCC 1 cut(s) 693
SspMI CTAG 1 cut(s) 368
SstI GAGCTC 1 cut(s) 526
StyD4I CCNGG 4 cut(s) 828, 957, 980, 1114
StyI CCWWGG 2 cut(s) 123, 871
TaaI ACNGT 5 cut(s) 76, 722, 902, 1124, 1173
TaiI ACGT 1 cut(s) 150
TaqI TCGA 2 cut(s) 1108, 1195
TasI AATT 6 cut(s) 101, 324, 616, 677, 710, 934
TatI WGTACW 1 cut(s) 969
TauI GCSGC 1 cut(s) 785
TfiI GAWTC 5 cut(s) 44, 305, 385, 454, 823
Tru1I TTAA 8 cut(s) 201, 449, 459, 645, 713, 834, 857, 1149
Tru9I TTAA 8 cut(s) 201, 449, 459, 645, 713, 834, 857, 1149
TscAI CASTG 4 cut(s) 81, 905, 1178, 1220
TseFI GTSAC 3 cut(s) 414, 662, 1006
TseI GCWGC 5 cut(s) 269, 491, 954, 1016, 1142
Tsp45I GTSAC 3 cut(s) 414, 662, 1006
TspDTI ATGAA 2 cut(s) 1037, 1098
TspGWI ACGGA 2 cut(s) 297, 488
TspRI CASTG 4 cut(s) 81, 905, 1178, 1220
Vha464I CTTAAG 1 cut(s) 458
VneI GTGCAC 1 cut(s) 723
XapI RAATTY 1 cut(s) 677
XceI RCATGY 1 cut(s) 144
XmnI GAANNNNTTC 1 cut(s) 1035
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.