Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001600

Physical Location & Seq

Genomic Coordinates Forward (+)

12665011 .. 12666355

Gene Structure 1345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1141000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGCTTGGTGAAGCTAATCTTCACTATGCATTTGGCCGGTTTGAAGAGGCCGTACCCATCTTGTCTGAAGTTGTAAAGAAAGCACCAAATTTGCCTGACTCATATCATACGCTTGGAATTATCCATGATAATCTTGGTAATGAATTGGATGCCTTGAATTGCTACAGAATTGCTGCATTTTTAACACCAAGAGATCCAGCTCTTTGGGAACTATTTTTTGACCGGTTCAATAAACAAGGTAACAGTCATGATTCTATTTATTGCCTTTCAAGAGCAATATCAGCAGATCCTGAAAATATGAATCTGAAATTTGATCGTGCTTCACTTTATGTTAAGCTTGGAGATTATCAGAAAGCTGTTGCGTCGTATGAACAGATAGTACAAGCATGTCCTGATAATGTTGAAGCACTCAAGACGGGAGCAATAATGTATGAAAGATGTGGTCAGCAAGAGCGTTCTATACAGATTCTGGAGGATTATCTCATAAATCATCCAACTGAAGCTGATCTTAGTGTCGTTAATCTGCTGGCTTCCATACTTATGGAAAATAATTCACATAAGGAAGCCCTTCAGCATATCGAGCATGCACAACTGGTATTCTGTTCAGAAAAAGAGATGCCTCTGGCAATGACAATTAAAGCAGGAATATGCCATGCTTACCTTGGAAATATGGAAAAGGCAAAAAGTATTTTTAGTGCTCTTGATGAGAAGAGTGCAGATAATGCTGACTTGATTGCTAAAGTTGCAAAGTCATATATGAGTCTTGGGCATCATAGTTCTGTGTTGAAGTATTATTTGATGTTGAAAGGAAATGTTGAATTTAATAACGGCTTTATAATTATGAAAATCGCTCAATGTCATTTGTCCTTGAATGATAGAGTACAGGCGATTTTGTGCTTCTATGAAGCTTTGAAGACACTTGAAGATGATATTGAGGCCCGATTAACATTGGCTTTTATTCTTGTTGAAGAAGCCAGGGAAGATGAAGCCATTTTGTTGCTATCTCCTCCGAAAAATCTAGGTCATATGGACCACCAAACAGATAAATCAGAACCATGGTGGTGCAATGGAAAGGTGAAACTGAAGCTTTGCAACATTTACCGAGCTAAGCGGATGGCCAAGGAATTTGTAGATACAATCTATCATCTCGTACATGAGTCACTAAGCATCGAATCACTTCAGCAAAAGGTGAAAGTGAAAAGAAGGCTCACAAAAACTGTCCTGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_6 TPR_7 TPR_8

Protein Analysis

410

Amino Acids

46.44

Weight (kDa)

5.99

Isoelectric Point (pI)

40.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_16	PF13432	78 - 133	3.2e-06	Tetratricopeptide repeat
TPR_9	PF13371	88 - 136	1.7e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17680 AT1G17680 AT1G17680
fragaria_vesca	FvH4_2g25610 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38050
malus_domestica	MD09G1155000.v1.1 MD17G1140900.v1.1 MD17G1141000.v1.1 MD17G1141100.v1.1
prunus_persica	Prupe.8G070000_v2.0.a1
pyrus_communis	pycom09g07370 pycom09g07380 pycom17g13410 pycom17g13440
rosa_chinensis	RchiOBHm_Chr2g0151071 RchiOBHm_Chr2g0151101 RchiOBHm_Chr6g0293861
rosa_laevigata	RLG00000011917 RLG00000020527 RLG00000020529
rosa_multiflora	Rmu_co8508109.1_g000001 Rmu_ssc0000470.1_g000002
rosa_roxburghii	Rroxscaffold_2G00096730 Rroxscaffold_7G00173850
rosa_rugosa	Rorug02G0424200 Rorug02G0424300 Rorug02G0424400 Rorug02G0424500 Rorug06G0238400
rosa_samantha	Rh2AG484900 Rh2BG497200 Rh2CG471000 Rh2DG508100 Rh6AG352000 Rh6BG358800 Rh6CG366100 Rh6CG366200 Rh6DG352800
rosa_wichuraiana	Rw2G039740 Rw6G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	836, 1228
AciI	CCGC	1 cut(s)	1111
AclWI	GGATC	2 cut(s)	188, 281
AcoI	YGGCCR	2 cut(s)	34, 1116
AcsI	RAATTY	4 cut(s)	88, 308, 818, 1124
AcuI	CTGAAG	5 cut(s)	87, 519, 554, 1103, 1163
AfaI	GTAC	4 cut(s)	54, 381, 882, 1152
AgeI	ACCGGT	1 cut(s)	222
AjnI	CCWGG	1 cut(s)	974
AluBI	AGCT	8 cut(s)	14, 200, 337, 356, 503, 908, 1087, 1106
AluI	AGCT	8 cut(s)	14, 200, 337, 356, 503, 908, 1087, 1106
Alw21I	GWGCWC	1 cut(s)	700
AlwI	GGATC	2 cut(s)	188, 281
AlwNI	CAGNNNCTG	2 cut(s)	290, 469
AoxI	GGCC	4 cut(s)	34, 48, 936, 1116
ApeKI	GCWGC	1 cut(s)	173
ApoI	RAATTY	4 cut(s)	88, 308, 818, 1124
AsiGI	ACCGGT	1 cut(s)	222
Asp700I	GAANNNNTTC	2 cut(s)	567, 1176
AspS9I	GGNCC	2 cut(s)	937, 1030
AsuHPI	GGTGA	3 cut(s)	20, 1087, 1201
AvaII	GGWCC	1 cut(s)	1030
BalI	TGGCCA	1 cut(s)	1118
BarI	GAAGNNNNNNTAC	2 cut(s)	36, 68
BbsI	GAAGAC	1 cut(s)	920
Bbv12I	GWGCWC	1 cut(s)	700
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	2 cut(s)	65, 1108
BceAI	ACGGC	2 cut(s)	35, 844
BciT130I	CCWGG	1 cut(s)	976
BfaI	CTAG	1 cut(s)	1019
BfmI	CTRYAG	1 cut(s)	163
BisI	GCNGC	1 cut(s)	174
BlpI	GCTNAGC	1 cut(s)	1107
BlsI	GCNGC	1 cut(s)	175
Bme1390I	CCNGG	1 cut(s)	976
Bme18I	GGWCC	1 cut(s)	1030
BmgT120I	GGNCC	2 cut(s)	937, 1030
BmrFI	CCNGG	1 cut(s)	976
BmsI	GCATC	4 cut(s)	139, 606, 778, 1176
BpiI	GAAGAC	1 cut(s)	920
BpmI	CTGGAG	1 cut(s)	491
Bpu1102I	GCTNAGC	1 cut(s)	1107
BpuEI	CTTGAG	1 cut(s)	395
BsaJI	CCNNGG	4 cut(s)	661, 975, 1055, 1119
BsaWI	WCCGGW	1 cut(s)	222
Bse118I	RCCGGY	2 cut(s)	36, 222
Bse1I	ACTGG	1 cut(s)	597
Bse3DI	GCAATG	2 cut(s)	633, 1072
BseBI	CCWGG	1 cut(s)	976
BseDI	CCNNGG	4 cut(s)	661, 975, 1055, 1119
BseGI	GGATG	3 cut(s)	154, 490, 1119
BseMI	GCAATG	2 cut(s)	633, 1072
BseNI	ACTGG	1 cut(s)	597
BseRI	GAGGAG	1 cut(s)	996
BseXI	GCAGC	1 cut(s)	160
BsgI	GTGCAG	1 cut(s)	735
BshFI	GGCC	4 cut(s)	36, 50, 938, 1118
BshTI	ACCGGT	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	700
BsiSI	CCGG	2 cut(s)	37, 223
BsnI	GGCC	4 cut(s)	36, 50, 938, 1118
Bsp1286I	GDGCHC	1 cut(s)	700
Bsp143I	GATC	4 cut(s)	193, 286, 313, 505
Bsp1720I	GCTNAGC	1 cut(s)	1107
Bsp19I	CCATGG	1 cut(s)	1055
BspACI	CCGC	1 cut(s)	1111
BspANI	GGCC	4 cut(s)	36, 50, 938, 1118
BspHI	TCATGA	1 cut(s)	247
BspPI	GGATC	2 cut(s)	188, 281
BsrDI	GCAATG	2 cut(s)	633, 1072
BsrFI	RCCGGY	2 cut(s)	36, 222
BsrI	ACTGG	1 cut(s)	597
BssAI	RCCGGY	2 cut(s)	36, 222
BssECI	CCNNGG	4 cut(s)	661, 975, 1055, 1119
BssMI	GATC	4 cut(s)	193, 286, 313, 505
BssT1I	CCWWGG	3 cut(s)	661, 1055, 1119
Bst2UI	CCWGG	1 cut(s)	976
Bst4CI	ACNGT	2 cut(s)	245, 1219
Bst6I	CTCTTC	2 cut(s)	39, 704
BstAPI	GCANNNNNTGC	1 cut(s)	722
BstC8I	GCNNGC	2 cut(s)	528, 585
BstDEI	CTNAG	3 cut(s)	509, 1107, 1163
BstDSI	CCRYGG	1 cut(s)	1055
BstF5I	GGATG	3 cut(s)	154, 490, 1119
BstKTI	GATC	4 cut(s)	196, 289, 316, 508
BstMBI	GATC	4 cut(s)	193, 286, 313, 505
BstMWI	GCNNNNNNNGC	4 cut(s)	281, 580, 722, 743
BstNI	CCWGG	1 cut(s)	976
BstNSI	RCATGY	2 cut(s)	390, 587
BstSCI	CCNGG	1 cut(s)	974
BstSFI	CTRYAG	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	1 cut(s)	920
BstX2I	RGATCY	2 cut(s)	193, 286
BstXI	CCANNNNNNTGG	2 cut(s)	204, 541
BstYI	RGATCY	2 cut(s)	193, 286
BsuRI	GGCC	4 cut(s)	36, 50, 938, 1118
BtgI	CCRYGG	1 cut(s)	1055
BtsCI	GGATG	3 cut(s)	154, 490, 1119
Cac8I	GCNNGC	2 cut(s)	528, 585
CaiI	CAGNNNCTG	2 cut(s)	290, 469
CciI	TCATGA	1 cut(s)	247
Cfr10I	RCCGGY	2 cut(s)	36, 222
Cfr13I	GGNCC	2 cut(s)	937, 1030
CseI	GACGC	1 cut(s)	351
Csp6I	GTAC	4 cut(s)	53, 380, 881, 1151
CspAI	ACCGGT	1 cut(s)	222
CviAII	CATG	7 cut(s)	125, 248, 387, 584, 653, 1056, 1154
CviQI	GTAC	4 cut(s)	53, 380, 881, 1151
DdeI	CTNAG	3 cut(s)	509, 1107, 1163
DpnI	GATC	4 cut(s)	195, 288, 315, 507
DpnII	GATC	4 cut(s)	193, 286, 313, 505
EaeI	YGGCCR	2 cut(s)	34, 1116
Eam1104I	CTCTTC	2 cut(s)	39, 704
EarI	CTCTTC	2 cut(s)	39, 704
Eco130I	CCWWGG	3 cut(s)	661, 1055, 1119
Eco47I	GGWCC	1 cut(s)	1030
Eco57I	CTGAAG	5 cut(s)	87, 519, 554, 1103, 1163
EcoRII	CCWGG	1 cut(s)	974
EcoT14I	CCWWGG	3 cut(s)	661, 1055, 1119
EcoT22I	ATGCAT	1 cut(s)	31
ErhI	CCWWGG	3 cut(s)	661, 1055, 1119
FaeI	CATG	7 cut(s)	128, 251, 390, 587, 656, 1059, 1157
FalI	AAGNNNNNCTT	3 cut(s)	35, 492, 524
FatI	CATG	7 cut(s)	124, 247, 386, 583, 652, 1055, 1153
FauNDI	CATATG	1 cut(s)	1026
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	3 cut(s)	161, 477, 1126
Fsp4HI	GCNGC	1 cut(s)	174
FspBI	CTAG	1 cut(s)	1019
GluI	GCNGC	1 cut(s)	174
GsuI	CTGGAG	1 cut(s)	491
HaeIII	GGCC	4 cut(s)	36, 50, 938, 1118
HapII	CCGG	2 cut(s)	37, 223
HgaI	GACGC	1 cut(s)	351
Hin1II	CATG	7 cut(s)	128, 251, 390, 587, 656, 1059, 1157
HindIII	AAGCTT	3 cut(s)	335, 906, 1085
HinfI	GANTC	7 cut(s)	98, 251, 301, 466, 760, 1157, 1172
HpaII	CCGG	2 cut(s)	37, 223
HphI	GGTGA	3 cut(s)	20, 1087, 1201
Hpy188I	TCNGA	6 cut(s)	67, 306, 351, 607, 1011, 1051
Hpy188III	TCNNGA	7 cut(s)	248, 270, 290, 392, 412, 470, 701
Hpy99I	CGWCG	1 cut(s)	367
HpyAV	CCTTC	2 cut(s)	578, 1197
HpyCH4III	ACNGT	2 cut(s)	245, 1219
HpyCH4V	TGCA	7 cut(s)	29, 176, 587, 716, 746, 1065, 1092
HpyF10VI	GCNNNNNNNGC	4 cut(s)	281, 580, 722, 743
HpyF3I	CTNAG	3 cut(s)	509, 1107, 1163
Hsp92II	CATG	7 cut(s)	128, 251, 390, 587, 656, 1059, 1157
Kzo9I	GATC	4 cut(s)	193, 286, 313, 505
LmnI	GCTCC	1 cut(s)	419
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	4 cut(s)	139, 606, 778, 1176
MaeI	CTAG	1 cut(s)	1019
MaeIII	GTNAC	2 cut(s)	239, 1158
MalI	GATC	4 cut(s)	195, 288, 315, 507
MboI	GATC	4 cut(s)	193, 286, 313, 505
MboII	GAAGA	7 cut(s)	11, 56, 721, 925, 935, 980, 992
MflI	RGATCY	2 cut(s)	193, 286
MhlI	GDGCHC	1 cut(s)	700
MlsI	TGGCCA	1 cut(s)	1118
MluNI	TGGCCA	1 cut(s)	1118
MlyI	GAGTC	3 cut(s)	92, 769, 1166
MmeI	TCCRAC	1 cut(s)	518
MnlI	CCTC	5 cut(s)	40, 466, 630, 928, 1017
Mox20I	TGGCCA	1 cut(s)	1118
Mph1103I	ATGCAT	1 cut(s)	31
MroXI	GAANNNNTTC	2 cut(s)	567, 1176
MscI	TGGCCA	1 cut(s)	1118
MseI	TTAA	6 cut(s)	182, 333, 519, 636, 822, 944
MslI	CAYNNNNRTG	2 cut(s)	539, 1060
Msp20I	TGGCCA	1 cut(s)	1118
MspI	CCGG	2 cut(s)	37, 223
MspR9I	CCNGG	1 cut(s)	976
MvaI	CCWGG	1 cut(s)	976
MwoI	GCNNNNNNNGC	4 cut(s)	281, 580, 722, 743
NcoI	CCATGG	1 cut(s)	1055
NdeI	CATATG	1 cut(s)	1026
NdeII	GATC	4 cut(s)	193, 286, 313, 505
NlaIII	CATG	7 cut(s)	128, 251, 390, 587, 656, 1059, 1157
NmuCI	GTSAC	1 cut(s)	1158
NsiI	ATGCAT	1 cut(s)	31
NspI	RCATGY	2 cut(s)	390, 587
PaeI	GCATGC	1 cut(s)	587
PagI	TCATGA	1 cut(s)	247
PdmI	GAANNNNTTC	2 cut(s)	567, 1176
PfeI	GAWTC	4 cut(s)	251, 301, 466, 1172
PinAI	ACCGGT	1 cut(s)	222
PkrI	GCNGC	1 cut(s)	175
PleI	GAGTC	3 cut(s)	92, 768, 1165
PpsI	GAGTC	3 cut(s)	92, 768, 1165
PsiI	TTATAA	2 cut(s)	836, 1228
Psp6I	CCWGG	1 cut(s)	974
PspGI	CCWGG	1 cut(s)	974
PspPI	GGNCC	2 cut(s)	937, 1030
PsrI	GAACNNNNNNTAC	2 cut(s)	363, 395
PstNI	CAGNNNCTG	2 cut(s)	290, 469
PsuI	RGATCY	2 cut(s)	193, 286
RsaI	GTAC	4 cut(s)	54, 381, 882, 1152
RsaNI	GTAC	4 cut(s)	53, 380, 881, 1151
RseI	CAYNNNNRTG	2 cut(s)	539, 1060
SaqAI	TTAA	6 cut(s)	182, 333, 519, 636, 822, 944
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	4 cut(s)	193, 286, 313, 505
Sau96I	GGNCC	2 cut(s)	937, 1030
SchI	GAGTC	3 cut(s)	92, 769, 1166
ScrFI	CCNGG	1 cut(s)	976
SduI	GDGCHC	1 cut(s)	700
SfaNI	GCATC	4 cut(s)	139, 606, 778, 1176
SfcI	CTRYAG	1 cut(s)	163
SinI	GGWCC	1 cut(s)	1030
SmiMI	CAYNNNNRTG	2 cut(s)	539, 1060
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
SphI	GCATGC	1 cut(s)	587
SsiI	CCGC	1 cut(s)	1111
SspMI	CTAG	1 cut(s)	1019
StyD4I	CCNGG	1 cut(s)	974
StyI	CCWWGG	3 cut(s)	661, 1055, 1119
TaaI	ACNGT	2 cut(s)	245, 1219
TaqI	TCGA	2 cut(s)	579, 1170
TatI	WGTACW	2 cut(s)	379, 880
TfiI	GAWTC	4 cut(s)	251, 301, 466, 1172
Tru1I	TTAA	6 cut(s)	182, 333, 519, 636, 822, 944
Tru9I	TTAA	6 cut(s)	182, 333, 519, 636, 822, 944
TseFI	GTSAC	1 cut(s)	1158
TseI	GCWGC	1 cut(s)	173
Tsp45I	GTSAC	1 cut(s)	1158
TspDTI	ATGAA	7 cut(s)	156, 314, 384, 447, 857, 918, 999
VpaK11BI	GGWCC	1 cut(s)	1030
XapI	RAATTY	4 cut(s)	88, 308, 818, 1124
XceI	RCATGY	2 cut(s)	390, 587
XcmI	CCANNNNNNNNNTGG	2 cut(s)	131, 659
XmnI	GAANNNNTTC	2 cut(s)	567, 1176
XspI	CTAG	1 cut(s)	1019
Zsp2I	ATGCAT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.