Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0001600

Physical Location & Seq

Genomic Coordinates Forward (+)

5555711 .. 5556487

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g07370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGATAAGGAGGAGAATGCTACTAGTGATGGTGATCATGAGGAGGCTTCTCAGTATGAACTAGCTGTGTGTCCCGAAGAAGACATGGAAGAAGATGTCGACGATGACGAAGAGGATGACGAAGATGAGGAGGTGGAGGAGGACAATGAGGATGAGGAAGAGAATGTCTTGAGTTTTATAGATGGGATTAATCCTTTGGATCTTGTGGAAGATGATGGTGGTGACCAACTTTATCAGCGACTTCTGGGGGCGGATTATGAGGCTTTAGCTGAGAGAAAGAGAAAAGCACTTGTGGACAGCCGGCCCGAAGGTTCGGTTAAGAAGGCCAGGCGGGAGGATCTTACTGGAGCAAGCATGGAGGAAATAATGGAGGCCATGAATTATGGTATGCAAAGGAGATCAAGGAAGTCTAAGAAAAGGGGTAGACGAAAAGGATCAACGAAGAAGCTAACCCCCGAGATTAATAGAATGCTTGGTGAAGCTAATCTTCACTATGCATTTGGCCGTTTTGAAGAGGCCATACCAATCTTGACAGAAGTTGTAAAGAAAGCACCAGATTTGCCTGACTCGTATCATACACTTGGAATTATCCATGACAATCTTGGTAATGAGTTGGATGCCTTGAATTGCTACAGAATTGCTGCATTTTTAGCACCAAGATCGATCCAGCTCTTTGGGAACTGCTTTTTGACCGGTTCAATAAACGAGGCAACAGTCATGATGCGATTTATTGCCTTTCAAGAGCAATATCAGCAGATCCTAAAAATGTTAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_6 TPR_7 TPR_8

Protein Analysis

259

Amino Acids

29.41

Weight (kDa)

4.42

Isoelectric Point (pI)

52.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17680 AT1G17680 AT1G17680
fragaria_vesca	FvH4_2g25610 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38050
malus_domestica	MD09G1155000.v1.1 MD17G1140900.v1.1 MD17G1141000.v1.1 MD17G1141100.v1.1
prunus_persica	Prupe.8G070000_v2.0.a1
pyrus_communis	pycom09g07370 pycom09g07380 pycom17g13410 pycom17g13440
rosa_chinensis	RchiOBHm_Chr2g0151071 RchiOBHm_Chr2g0151101 RchiOBHm_Chr6g0293861
rosa_laevigata	RLG00000011917 RLG00000020527 RLG00000020529
rosa_multiflora	Rmu_co8508109.1_g000001 Rmu_ssc0000470.1_g000002
rosa_roxburghii	Rroxscaffold_2G00096730 Rroxscaffold_7G00173850
rosa_rugosa	Rorug02G0424200 Rorug02G0424300 Rorug02G0424400 Rorug02G0424500 Rorug06G0238400
rosa_samantha	Rh2AG484900 Rh2BG497200 Rh2CG471000 Rh2DG508100 Rh6AG352000 Rh6BG358800 Rh6CG366100 Rh6CG366200 Rh6DG352800
rosa_wichuraiana	Rw2G039740 Rw6G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	99, 424
AciI	CCGC	2 cut(s)	251, 331
AclWI	GGATC	5 cut(s)	207, 345, 442, 658, 751
AcoI	YGGCCR	1 cut(s)	502
AgeI	ACCGGT	1 cut(s)	692
AgsI	TTSAA	4 cut(s)	512, 625, 699, 740
AhlI	ACTAGT	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	326
AluBI	AGCT	5 cut(s)	65, 269, 448, 482, 670
AluI	AGCT	5 cut(s)	65, 269, 448, 482, 670
AlwI	GGATC	5 cut(s)	207, 345, 442, 658, 751
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	5 cut(s)	302, 324, 372, 502, 516
ApeKI	GCWGC	1 cut(s)	641
AseI	ATTAAT	2 cut(s)	189, 462
AsiGI	ACCGGT	1 cut(s)	692
AspS9I	GGNCC	1 cut(s)	303
AsuHPI	GGTGA	3 cut(s)	44, 233, 488
AvaI	CYCGRG	1 cut(s)	455
BarI	GAAGNNNNNNTAC	2 cut(s)	504, 536
BbsI	GAAGAC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	628
BccI	CCATC	3 cut(s)	23, 176, 209
BceAI	ACGGC	1 cut(s)	489
BcgI	CGANNNNNNTGC	2 cut(s)	642, 676
BciT130I	CCWGG	1 cut(s)	328
BclI	TGATCA	1 cut(s)	34
BcuI	ACTAGT	1 cut(s)	23
BfaI	CTAG	2 cut(s)	24, 62
BfmI	CTRYAG	1 cut(s)	631
BisI	GCNGC	1 cut(s)	642
BlsI	GCNGC	1 cut(s)	643
Bme1390I	CCNGG	1 cut(s)	328
BmeT110I	CYCGRG	1 cut(s)	455
BmgT120I	GGNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	328
BmsI	GCATC	2 cut(s)	607, 711
BpiI	GAAGAC	1 cut(s)	87
BpmI	CTGGAG	1 cut(s)	366
BpuEI	CTTGAG	1 cut(s)	190
Bsa29I	ATCGAT	1 cut(s)	662
BsaBI	GATNNNNATC	1 cut(s)	33
BsaWI	WCCGGW	1 cut(s)	692
Bse118I	RCCGGY	2 cut(s)	300, 692
Bse1I	ACTGG	1 cut(s)	349
Bse8I	GATNNNNATC	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	328
BseCI	ATCGAT	1 cut(s)	662
BseGI	GGATG	3 cut(s)	121, 157, 622
BseJI	GATNNNNATC	1 cut(s)	33
BseMII	CTCAG	2 cut(s)	65, 261
BseNI	ACTGG	1 cut(s)	349
BseRI	GAGGAG	4 cut(s)	26, 56, 143, 152
BseXI	GCAGC	1 cut(s)	628
BshFI	GGCC	5 cut(s)	304, 326, 374, 504, 518
BshTI	ACCGGT	1 cut(s)	692
BshVI	ATCGAT	1 cut(s)	662
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	2 cut(s)	301, 693
BslFI	GGGAC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	57
BsmI	GAATGC	2 cut(s)	22, 474
BsnI	GGCC	5 cut(s)	304, 326, 374, 504, 518
BsoBI	CYCGRG	1 cut(s)	455
Bsp143I	GATC	8 cut(s)	34, 199, 337, 398, 434, 659, 663, 756
BspACI	CCGC	2 cut(s)	251, 331
BspANI	GGCC	5 cut(s)	304, 326, 374, 504, 518
BspCNI	CTCAG	2 cut(s)	64, 262
BspDI	ATCGAT	1 cut(s)	662
BspHI	TCATGA	2 cut(s)	37, 717
BspPI	GGATC	5 cut(s)	207, 345, 442, 658, 751
BsrFI	RCCGGY	2 cut(s)	300, 692
BsrI	ACTGG	1 cut(s)	349
BssAI	RCCGGY	2 cut(s)	300, 692
BssMI	GATC	8 cut(s)	34, 199, 337, 398, 434, 659, 663, 756
Bst2UI	CCWGG	1 cut(s)	328
Bst4CI	ACNGT	1 cut(s)	715
Bst6I	CTCTTC	3 cut(s)	105, 153, 507
BstC8I	GCNNGC	2 cut(s)	302, 352
BstDEI	CTNAG	3 cut(s)	51, 270, 411
BstEII	GGTNACC	1 cut(s)	221
BstF5I	GGATG	3 cut(s)	121, 157, 622
BstKTI	GATC	8 cut(s)	37, 202, 340, 401, 437, 662, 666, 759
BstMBI	GATC	8 cut(s)	34, 199, 337, 398, 434, 659, 663, 756
BstMWI	GCNNNNNNNGC	2 cut(s)	650, 751
BstNI	CCWGG	1 cut(s)	328
BstPI	GGTNACC	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	326
BstSFI	CTRYAG	1 cut(s)	631
BstV1I	GCAGC	1 cut(s)	628
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	3 cut(s)	199, 337, 756
BstXI	CCANNNNNNTGG	1 cut(s)	674
BstYI	RGATCY	3 cut(s)	199, 337, 756
Bsu15I	ATCGAT	1 cut(s)	662
BsuRI	GGCC	5 cut(s)	304, 326, 374, 504, 518
BsuTUI	ATCGAT	1 cut(s)	662
BtsCI	GGATG	3 cut(s)	121, 157, 622
Cac8I	GCNNGC	2 cut(s)	302, 352
CciI	TCATGA	2 cut(s)	37, 717
Cfr10I	RCCGGY	2 cut(s)	300, 692
Cfr13I	GGNCC	1 cut(s)	303
ClaI	ATCGAT	1 cut(s)	662
CspAI	ACCGGT	1 cut(s)	692
CviAII	CATG	6 cut(s)	38, 85, 355, 376, 593, 718
DdeI	CTNAG	3 cut(s)	51, 270, 411
DpnI	GATC	8 cut(s)	36, 201, 339, 400, 436, 661, 665, 758
DpnII	GATC	8 cut(s)	34, 199, 337, 398, 434, 659, 663, 756
EaeI	YGGCCR	1 cut(s)	502
Eam1104I	CTCTTC	3 cut(s)	105, 153, 507
EarI	CTCTTC	3 cut(s)	105, 153, 507
EciI	GGCGGA	1 cut(s)	266
Eco88I	CYCGRG	1 cut(s)	455
Eco91I	GGTNACC	1 cut(s)	221
EcoO65I	GGTNACC	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	326
EcoT22I	ATGCAT	1 cut(s)	499
FaeI	CATG	6 cut(s)	41, 88, 358, 379, 596, 721
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FaqI	GGGAC	1 cut(s)	57
FatI	CATG	6 cut(s)	37, 84, 354, 375, 592, 717
FauI	CCCGC	1 cut(s)	324
FbaI	TGATCA	1 cut(s)	34
FblI	GTMKAC	2 cut(s)	99, 424
Fnu4HI	GCNGC	1 cut(s)	642
FokI	GGATG	3 cut(s)	128, 164, 629
Fsp4HI	GCNGC	1 cut(s)	642
FspBI	CTAG	2 cut(s)	24, 62
GluI	GCNGC	1 cut(s)	642
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	5 cut(s)	304, 326, 374, 504, 518
HapII	CCGG	2 cut(s)	301, 693
Hin1II	CATG	6 cut(s)	41, 88, 358, 379, 596, 721
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HinfI	GANTC	1 cut(s)	566
HpaII	CCGG	2 cut(s)	301, 693
HphI	GGTGA	3 cut(s)	44, 233, 488
Hpy166II	GTNNAC	3 cut(s)	100, 295, 425
Hpy188I	TCNGA	1 cut(s)	776
Hpy188III	TCNNGA	6 cut(s)	38, 74, 169, 529, 718, 740
Hpy8I	GTNNAC	3 cut(s)	100, 295, 425
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	2 cut(s)	302, 316
HpyCH4III	ACNGT	1 cut(s)	715
HpyCH4V	TGCA	3 cut(s)	391, 497, 644
HpyF10VI	GCNNNNNNNGC	2 cut(s)	650, 751
HpyF3I	CTNAG	3 cut(s)	51, 270, 411
Hsp92II	CATG	6 cut(s)	41, 88, 358, 379, 596, 721
KroI	GCCGGC	1 cut(s)	300
KroNI	GCCGGC	1 cut(s)	302
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	8 cut(s)	34, 199, 337, 398, 434, 659, 663, 756
LmnI	GCTCC	1 cut(s)	347
LpnPI	CCDG	9 cut(s)	230, 313, 314, 330, 340, 567, 576, 680, 706
Lsp1109I	GCAGC	1 cut(s)	628
LweI	GCATC	2 cut(s)	607, 711
MaeI	CTAG	2 cut(s)	24, 62
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	8 cut(s)	36, 201, 339, 400, 436, 661, 665, 758
MboI	GATC	8 cut(s)	34, 199, 337, 398, 434, 659, 663, 756
MflI	RGATCY	3 cut(s)	199, 337, 756
MluCI	AATT	4 cut(s)	379, 585, 625, 636
MlyI	GAGTC	1 cut(s)	560
MmeI	TCCRAC	1 cut(s)	594
Mph1103I	ATGCAT	1 cut(s)	499
MroNI	GCCGGC	1 cut(s)	300
MseI	TTAA	3 cut(s)	189, 318, 462
MspI	CCGG	2 cut(s)	301, 693
MspR9I	CCNGG	1 cut(s)	328
Mva1269I	GAATGC	2 cut(s)	22, 474
MvaI	CCWGG	1 cut(s)	328
MwoI	GCNNNNNNNGC	2 cut(s)	650, 751
NaeI	GCCGGC	1 cut(s)	302
NdeII	GATC	8 cut(s)	34, 199, 337, 398, 434, 659, 663, 756
NgoMIV	GCCGGC	1 cut(s)	300
NlaIII	CATG	6 cut(s)	41, 88, 358, 379, 596, 721
NmuCI	GTSAC	1 cut(s)	221
NsiI	ATGCAT	1 cut(s)	499
PagI	TCATGA	2 cut(s)	37, 717
PcsI	WCGNNNNNNNCGW	1 cut(s)	105
PctI	GAATGC	2 cut(s)	22, 474
PdiI	GCCGGC	1 cut(s)	302
PinAI	ACCGGT	1 cut(s)	692
PkrI	GCNGC	1 cut(s)	643
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
PshBI	ATTAAT	2 cut(s)	189, 462
Psp6I	CCWGG	1 cut(s)	326
PspEI	GGTNACC	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	326
PspPI	GGNCC	1 cut(s)	303
PsuI	RGATCY	3 cut(s)	199, 337, 756
SalI	GTCGAC	1 cut(s)	98
SaqAI	TTAA	3 cut(s)	189, 318, 462
SatI	GCNGC	1 cut(s)	642
Sau3AI	GATC	8 cut(s)	34, 199, 337, 398, 434, 659, 663, 756
Sau96I	GGNCC	1 cut(s)	303
SchI	GAGTC	1 cut(s)	560
ScrFI	CCNGG	1 cut(s)	328
SetI	ASST	7 cut(s)	67, 135, 271, 313, 450, 484, 672
SfaNI	GCATC	2 cut(s)	607, 711
SfcI	CTRYAG	1 cut(s)	631
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
SpeI	ACTAGT	1 cut(s)	23
Sse9I	AATT	4 cut(s)	379, 585, 625, 636
SsiI	CCGC	2 cut(s)	251, 331
SspMI	CTAG	2 cut(s)	24, 62
StyD4I	CCNGG	1 cut(s)	326
TaaI	ACNGT	1 cut(s)	715
TaqI	TCGA	2 cut(s)	99, 662
TasI	AATT	4 cut(s)	379, 585, 625, 636
Tru1I	TTAA	3 cut(s)	189, 318, 462
Tru9I	TTAA	3 cut(s)	189, 318, 462
TseFI	GTSAC	1 cut(s)	221
TseI	GCWGC	1 cut(s)	641
Tsp45I	GTSAC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	72, 392
VspI	ATTAAT	2 cut(s)	189, 462
XcmI	CCANNNNNNNNNTGG	1 cut(s)	599
XmiI	GTMKAC	2 cut(s)	99, 424
XspI	CTAG	2 cut(s)	24, 62
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.