pycom17g13440

General transcription factor 3C polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001600
Physical Location & Seq
Forward (+)
11049600 .. 11050658
1059 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g13440.1

Sequence Viewer

Length: 960 bp
ATGGCTTCTGGAGTTGACTGGCAAAGTGATGATTCAGATGATGATCCTCCGGAAGAAATACATAAAGAACCTCCCCTGCCAGATCTTCTCAAGGACAAAGAGCATAATGGCCTCGTAATAGATTTGTGTAAGTCATTGGCTTCCTTGCAAAGATATTGCGAAGCATTGGAGATAATAAATCTTTTTTTGAAAGTGACTCGCAACACTTCTTCTGTCGCAGAGGAACTCCGGTCTCTTGGAGGTCAAATTGCATACAACACTCCTGATCCTGAGCGTGGAGTTAACTGTGTAAAATACATTGTGGACCAGCATCCATACAGCAATGCTGCCTGGAATTGCTATTACAAGGTAATTACCAGATTAGATGACTGGTATGCAAGGCATTACAAGTTTCTACGCAATAAGAGAGACAAACTCAGAGACTGTGCACCTCCCAGTCTCATTTCTGGGCATCATTTTACTAAAAAAACCCGTCATCAAGATGCTGGGAGGGAATACCTTGAAGCTTATAAATTATTGCCGGAGCATCCCCTGATTAATCTATGTGTCGGTACTGCCTTAATCAACTTATCCCTCGGACATAGACTTCAGAATAGGCACCAGTGTGTTGCACAAGGATTAGCATTCCTCCACAACAATTTGCAGCTTTCTGAATTCAGCCAGGAGGCTTTTTACAACATAGCCAGGGCGTACCATCAGGTCGGCCTTGTGACTCTGGCAGCTTGGCATTATGACAAGGTTCTTGCAATGCAAGTGAAGGATTACCCCATGCCAAAGCTTCCCCATGAAAAGCCAGAGTCTGCTGAAAATCGAAAACTGGGTTACTGTGACCTTCGAAGAGAAGCAGCTTATAATTTGCATCTCATCTACAAAAAGAGTGGAGCGGTTGATCAAATATATGTTGCTCGAACCATCTTAAGAGACACTGCACTTTCTGAAATTAATGAATTATGCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6 TPR_7 TPR_8

Protein Analysis

320

Amino Acids

36.63

Weight (kDa)

6.73

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 510, 852
AccB1I GGYRCC 1 cut(s) 597
AccBSI CCGCTC 1 cut(s) 884
AccIII TCCGGA 1 cut(s) 49
AciI CCGC 1 cut(s) 884
AclWI GGATC 2 cut(s) 38, 260
AcsI RAATTY 1 cut(s) 653
AcuI CTGAAG 1 cut(s) 572
AfaI GTAC 2 cut(s) 553, 692
AfiI CCNNNNNNNGG 1 cut(s) 275
AflII CTTAAG 1 cut(s) 916
AgsI TTSAA 2 cut(s) 190, 503
AjnI CCWGG 3 cut(s) 329, 660, 683
AleI CACNNNNGTG 1 cut(s) 603
AluBI AGCT 5 cut(s) 506, 646, 722, 778, 848
AluI AGCT 5 cut(s) 506, 646, 722, 778, 848
Alw21I GWGCWC 1 cut(s) 430
Alw26I GTCTC 5 cut(s) 237, 402, 414, 443, 915
Alw44I GTGCAC 1 cut(s) 426
AlwI GGATC 2 cut(s) 38, 260
AlwNI CAGNNNCTG 2 cut(s) 423, 800
Aor13HI TCCGGA 1 cut(s) 49
AoxI GGCC 2 cut(s) 109, 703
ApaLI GTGCAC 1 cut(s) 426
ApeKI GCWGC 4 cut(s) 326, 643, 719, 845
ApoI RAATTY 1 cut(s) 653
AseI ATTAAT 2 cut(s) 537, 942
AspS9I GGNCC 1 cut(s) 304
AsuII TTCGAA 1 cut(s) 835
AvaII GGWCC 1 cut(s) 304
BaeGI GKGCMC 1 cut(s) 430
BanI GGYRCC 1 cut(s) 597
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 4 cut(s) 313, 655, 731, 857
BccI CCATC 2 cut(s) 702, 920
BciT130I CCWGG 3 cut(s) 331, 662, 685
BclI TGATCA 1 cut(s) 889
BcoDI GTCTC 5 cut(s) 237, 402, 414, 443, 915
BfrI CTTAAG 1 cut(s) 916
BglII AGATCT 1 cut(s) 82
BisI GCNGC 4 cut(s) 327, 644, 720, 846
BlsI GCNGC 4 cut(s) 328, 645, 721, 847
Bme1390I CCNGG 3 cut(s) 331, 662, 685
Bme18I GGWCC 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 304
BmiI GGNNCC 1 cut(s) 599
BmrFI CCNGG 3 cut(s) 331, 662, 685
BmrI ACTGGG 2 cut(s) 429, 827
BmsI GCATC 5 cut(s) 319, 460, 472, 535, 868
BmuI ACTGGG 2 cut(s) 429, 827
BplI GAGNNNNNCTC 2 cut(s) 399, 431
BpmI CTGGAG 1 cut(s) 30
Bpu10I CCTNAGC 1 cut(s) 270
Bpu14I TTCGAA 1 cut(s) 835
BpuEI CTTGAG 1 cut(s) 74
BsaBI GATNNNNATC 1 cut(s) 42
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 2 cut(s) 574, 684
BsaWI WCCGGW 2 cut(s) 49, 228
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse1I ACTGG 5 cut(s) 23, 374, 435, 601, 822
Bse3DI GCAATG 2 cut(s) 328, 753
Bse8I GATNNNNATC 1 cut(s) 42
BseAI TCCGGA 1 cut(s) 49
BseBI CCWGG 3 cut(s) 331, 662, 685
BseDI CCNNGG 2 cut(s) 574, 684
BseGI GGATG 2 cut(s) 310, 526
BseJI GATNNNNATC 1 cut(s) 42
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMI GCAATG 2 cut(s) 328, 753
BseMII CTCAG 2 cut(s) 261, 430
BseNI ACTGG 5 cut(s) 23, 374, 435, 601, 822
BseSI GKGCMC 1 cut(s) 430
BseXI GCAGC 4 cut(s) 313, 655, 731, 857
BseYI CCCAGC 1 cut(s) 485
BsgI GTGCAG 1 cut(s) 912
BshFI GGCC 2 cut(s) 111, 705
BshNI GGYRCC 1 cut(s) 597
BsiHKAI GWGCWC 1 cut(s) 430
BsiSI CCGG 3 cut(s) 50, 229, 521
BslI CCNNNNNNNGG 1 cut(s) 275
BsmAI GTCTC 5 cut(s) 237, 402, 414, 443, 915
BsmI GAATGC 1 cut(s) 623
BsnI GGCC 2 cut(s) 111, 705
Bso31I GGTCTC 1 cut(s) 237
Bsp119I TTCGAA 1 cut(s) 835
Bsp1286I GDGCHC 1 cut(s) 430
Bsp13I TCCGGA 1 cut(s) 49
Bsp143I GATC 4 cut(s) 43, 82, 265, 889
BspACI CCGC 1 cut(s) 884
BspANI GGCC 2 cut(s) 111, 705
BspCNI CTCAG 2 cut(s) 262, 429
BspEI TCCGGA 1 cut(s) 49
BspLI GGNNCC 1 cut(s) 599
BspPI GGATC 2 cut(s) 38, 260
BspT104I TTCGAA 1 cut(s) 835
BspT107I GGYRCC 1 cut(s) 597
BspTI CTTAAG 1 cut(s) 916
BspTNI GGTCTC 1 cut(s) 237
BsrBI CCGCTC 1 cut(s) 884
BsrDI GCAATG 2 cut(s) 328, 753
BsrI ACTGG 5 cut(s) 23, 374, 435, 601, 822
BssECI CCNNGG 2 cut(s) 574, 684
BssMI GATC 4 cut(s) 43, 82, 265, 889
Bst2UI CCWGG 3 cut(s) 331, 662, 685
Bst4CI ACNGT 3 cut(s) 287, 425, 827
Bst6I CTCTTC 1 cut(s) 832
BstAFI CTTAAG 1 cut(s) 916
BstBI TTCGAA 1 cut(s) 835
BstDEI CTNAG 2 cut(s) 270, 416
BstF5I GGATG 2 cut(s) 310, 526
BstKTI GATC 4 cut(s) 46, 85, 268, 892
BstMAI GTCTC 5 cut(s) 237, 402, 414, 443, 915
BstMBI GATC 4 cut(s) 43, 82, 265, 889
BstNI CCWGG 3 cut(s) 331, 662, 685
BstSCI CCNGG 3 cut(s) 329, 660, 683
BstSLI GKGCMC 1 cut(s) 430
BstV1I GCAGC 4 cut(s) 313, 655, 731, 857
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
BsuRI GGCC 2 cut(s) 111, 705
BtsCI GGATG 2 cut(s) 310, 526
BtsI GCAGTG 1 cut(s) 924
BtsIMutI CAGTG 2 cut(s) 608, 924
CaiI CAGNNNCTG 2 cut(s) 423, 800
Cfr13I GGNCC 1 cut(s) 304
Csp6I GTAC 2 cut(s) 552, 691
CspCI CAANNNNNGTGG 2 cut(s) 859, 894
CviAII CATG 2 cut(s) 769, 785
CviQI GTAC 2 cut(s) 552, 691
DdeI CTNAG 2 cut(s) 270, 416
DpnI GATC 4 cut(s) 45, 84, 267, 891
DpnII GATC 4 cut(s) 43, 82, 265, 889
Eam1104I CTCTTC 1 cut(s) 832
EarI CTCTTC 1 cut(s) 832
Eco31I GGTCTC 1 cut(s) 237
Eco47I GGWCC 1 cut(s) 304
Eco57I CTGAAG 1 cut(s) 572
EcoRI GAATTC 1 cut(s) 653
EcoRII CCWGG 3 cut(s) 329, 660, 683
FaeI CATG 2 cut(s) 772, 788
FatI CATG 2 cut(s) 768, 784
FbaI TGATCA 1 cut(s) 889
Fnu4HI GCNGC 4 cut(s) 327, 644, 720, 846
FokI GGATG 2 cut(s) 297, 513
Fsp4HI GCNGC 4 cut(s) 327, 644, 720, 846
GluI GCNGC 4 cut(s) 327, 644, 720, 846
GsaI CCCAGC 1 cut(s) 489
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 2 cut(s) 111, 705
HapII CCGG 3 cut(s) 50, 229, 521
Hin1II CATG 2 cut(s) 772, 788
HincII GTYRAC 2 cut(s) 16, 283
HindII GTYRAC 2 cut(s) 16, 283
HindIII AAGCTT 2 cut(s) 504, 776
HinfI GANTC 4 cut(s) 32, 196, 712, 797
HpaI GTTAAC 1 cut(s) 283
HpaII CCGG 3 cut(s) 50, 229, 521
Hpy166II GTNNAC 4 cut(s) 16, 283, 304, 428
Hpy188I TCNGA 6 cut(s) 37, 419, 578, 591, 652, 937
Hpy188III TCNNGA 6 cut(s) 9, 50, 263, 269, 479, 957
Hpy8I GTNNAC 4 cut(s) 16, 283, 304, 428
HpyAV CCTTC 2 cut(s) 751, 842
HpyCH4III ACNGT 3 cut(s) 287, 425, 827
HpyF3I CTNAG 2 cut(s) 270, 416
Hsp92II CATG 2 cut(s) 772, 788
Kpn2I TCCGGA 1 cut(s) 49
Ksp22I TGATCA 1 cut(s) 889
KspAI GTTAAC 1 cut(s) 283
Kzo9I GATC 4 cut(s) 43, 82, 265, 889
LmnI GCTCC 3 cut(s) 523, 881, 959
Lsp1109I GCAGC 4 cut(s) 313, 655, 731, 857
LweI GCATC 5 cut(s) 319, 460, 472, 535, 868
MaeIII GTNAC 4 cut(s) 193, 709, 821, 827
MalI GATC 4 cut(s) 45, 84, 267, 891
MbiI CCGCTC 1 cut(s) 884
MboI GATC 4 cut(s) 43, 82, 265, 889
MboII GAAGA 4 cut(s) 65, 77, 201, 849
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 9 cut(s) 246, 334, 351, 512, 637, 653, 853, 939, 947
MlyI GAGTC 3 cut(s) 190, 706, 806
MroI TCCGGA 1 cut(s) 49
MseI TTAA 5 cut(s) 282, 537, 560, 917, 942
MslI CAYNNNNRTG 2 cut(s) 480, 603
MspCI CTTAAG 1 cut(s) 916
MspI CCGG 3 cut(s) 50, 229, 521
MspR9I CCNGG 3 cut(s) 331, 662, 685
Mva1269I GAATGC 1 cut(s) 623
MvaI CCWGG 3 cut(s) 331, 662, 685
NdeII GATC 4 cut(s) 43, 82, 265, 889
NlaIII CATG 2 cut(s) 772, 788
NlaIV GGNNCC 1 cut(s) 599
NmuCI GTSAC 3 cut(s) 193, 709, 827
NspV TTCGAA 1 cut(s) 835
OliI CACNNNNGTG 1 cut(s) 603
PctI GAATGC 1 cut(s) 623
PfeI GAWTC 1 cut(s) 32
PkrI GCNGC 4 cut(s) 328, 645, 721, 847
PleI GAGTC 3 cut(s) 190, 706, 805
PpsI GAGTC 3 cut(s) 190, 706, 805
PshBI ATTAAT 2 cut(s) 537, 942
PsiI TTATAA 2 cut(s) 510, 852
Psp6I CCWGG 3 cut(s) 329, 660, 683
PspFI CCCAGC 1 cut(s) 485
PspGI CCWGG 3 cut(s) 329, 660, 683
PspN4I GGNNCC 1 cut(s) 599
PspPI GGNCC 1 cut(s) 304
PstNI CAGNNNCTG 2 cut(s) 423, 800
PsuI RGATCY 1 cut(s) 82
RsaI GTAC 2 cut(s) 553, 692
RsaNI GTAC 2 cut(s) 552, 691
RseI CAYNNNNRTG 2 cut(s) 480, 603
SaqAI TTAA 5 cut(s) 282, 537, 560, 917, 942
SatI GCNGC 4 cut(s) 327, 644, 720, 846
Sau3AI GATC 4 cut(s) 43, 82, 265, 889
Sau96I GGNCC 1 cut(s) 304
SchI GAGTC 3 cut(s) 190, 706, 806
ScrFI CCNGG 3 cut(s) 331, 662, 685
SduI GDGCHC 1 cut(s) 430
SfaNI GCATC 5 cut(s) 319, 460, 472, 535, 868
SfuI TTCGAA 1 cut(s) 835
SinI GGWCC 1 cut(s) 304
SmiMI CAYNNNNRTG 2 cut(s) 480, 603
SmlI CTYRAG 2 cut(s) 89, 916
SmoI CTYRAG 2 cut(s) 89, 916
Sse9I AATT 9 cut(s) 246, 334, 351, 512, 637, 653, 853, 939, 947
SsiI CCGC 1 cut(s) 884
StyD4I CCNGG 3 cut(s) 329, 660, 683
TaaI ACNGT 3 cut(s) 287, 425, 827
TaqI TCGA 3 cut(s) 811, 835, 907
TasI AATT 9 cut(s) 246, 334, 351, 512, 637, 653, 853, 939, 947
TfiI GAWTC 1 cut(s) 32
Tru1I TTAA 5 cut(s) 282, 537, 560, 917, 942
Tru9I TTAA 5 cut(s) 282, 537, 560, 917, 942
TscAI CASTG 2 cut(s) 608, 931
TseFI GTSAC 3 cut(s) 193, 709, 827
TseI GCWGC 4 cut(s) 326, 643, 719, 845
Tsp45I GTSAC 3 cut(s) 193, 709, 827
TspDTI ATGAA 2 cut(s) 801, 960
TspRI CASTG 2 cut(s) 608, 931
Vha464I CTTAAG 1 cut(s) 916
VneI GTGCAC 1 cut(s) 426
VpaK11BI GGWCC 1 cut(s) 304
VspI ATTAAT 2 cut(s) 537, 942
XapI RAATTY 1 cut(s) 653
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.