Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001600

Physical Location & Seq

Genomic Coordinates Reverse (-)

55340075 .. 55341672

Gene Structure 1598 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG366200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGGCCTGCTTTGGAGTGGGCCCAAGAAGAAAATTGCGTGGGAAGCAAGAAGAGTGCCAGAGAGGATAAGAAAGAGTCATAAAAGACTGAAAAAGACACGATCTTTGATCCTAAAATTACAGAAGAAGCTCAATTTCGCACGCAAAGCAAATCAAAGCCTTAGCTCACCAAATTCAAAGGCCCGGCATCACAAAGATTCGAGCTTTCAGGTCGGATTCAACTCTTTCAATCAGGAGTATGAGACTTTAGCTAAGAAAAAACGAAAACCGCTTGGGGATAGCCGCCCTAAAGGTTCAGTTAAGAAGGCCAGAAAAGATGAGGGTTCTAAAGAAAGCTTAGAGGAGGAATTAATGGCGTTCATGATGGGCAGGCCGCGAAGGAGATCAAGGAAGCTTAAGAAAAGAGGTAGAAGAAAAGGATCAAAGAACCAATGCAGCCCTGAAATTAGCAGGCTTCTTAGTAAGGCTCGAAACTGCTATGCACTTGGGGATTACAAAGAGGCCGTACCCGTCTTGAAAGAAGTGATTAAGCAAGCACCGCATTTGCCCGATTCCTATCAGACACTTGGAGATGTCCATAGTGCTCTTGGCGATAAAAATAGAGCCTTAAATTGCTACCATGTTGCTGCACATTTAGCACCGAAAAATCCTTCTTTGTGGACATTAATTTTTACAAAGTTCATGGAAGTAGGGAACATTTCTGAAGCTTCGACTAGCCTTTCGAGAGCAATATCAGCTGATCCTGAAGCCGAAAATGTTGTTTCTCTGAAGTTGGATCGTGCTTCACTCCATGTTCAGCTTAAAGATTATGAAAAAGCTGCTGCATTGTATGAAGAAATAATCCAAACCTGTCCTGGTAATGTTAAAGCACTGAAGACAGGAGCAGAGATGTATGAAAAATGCGGTCAGCGTGAGCGCTCTATCCATGTGCTGGAGGAGTATCTCAGAGCACATCCAAATGAAGCTGATTTGAGTGTCATTGATTTGTTAGTTTCTCTACTTATGGAAAACAATTTACATAATGAAGCTCTTCAGCATATTGAGCATGCACAACTGACACTCCATTCGGGAAAAGAGCTGCCTCTTGAGATGAAAGTTAAAGCAGGAATTTGCCAAGCTAACCTCGGAAACATGCGCAAGGCAGCAAAGTACAAGCAATTTTCTACTTCTACCAAGCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_6 TPR_7 TPR_8

Protein Analysis

393

Amino Acids

44.48

Weight (kDa)

9.94

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_19	PF14559	161 - 222	5.5e-07	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17680 AT1G17680 AT1G17680
fragaria_vesca	FvH4_2g25610 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38050
malus_domestica	MD09G1155000.v1.1 MD17G1140900.v1.1 MD17G1141000.v1.1 MD17G1141100.v1.1
prunus_persica	Prupe.8G070000_v2.0.a1
pyrus_communis	pycom09g07370 pycom09g07380 pycom17g13410 pycom17g13440
rosa_chinensis	RchiOBHm_Chr2g0151071 RchiOBHm_Chr2g0151101 RchiOBHm_Chr6g0293861
rosa_laevigata	RLG00000011917 RLG00000020527 RLG00000020529
rosa_multiflora	Rmu_co8508109.1_g000001 Rmu_ssc0000470.1_g000002
rosa_roxburghii	Rroxscaffold_2G00096730 Rroxscaffold_7G00173850
rosa_rugosa	Rorug02G0424200 Rorug02G0424300 Rorug02G0424400 Rorug02G0424500 Rorug06G0238400
rosa_samantha	Rh2AG484900 Rh2BG497200 Rh2CG471000 Rh2DG508100 Rh6AG352000 Rh6BG358800 Rh6CG366100 Rh6CG366200 Rh6DG352800
rosa_wichuraiana	Rw2G039740 Rw6G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1136
AccB7I	CCANNNNNTGG	1 cut(s)	931
AccII	CGCG	1 cut(s)	376
AciI	CCGC	5 cut(s)	269, 283, 374, 539, 903
AclWI	GGATC	4 cut(s)	103, 427, 734, 783
AcsI	RAATTY	2 cut(s)	172, 1107
AcuI	CTGAAG	5 cut(s)	723, 765, 788, 893, 1016
AfaI	GTAC	2 cut(s)	507, 1151
AfeI	AGCGCT	1 cut(s)	917
AfiI	CCNNNNNNNGG	1 cut(s)	931
AflII	CTTAAG	1 cut(s)	395
AgsI	TTSAA	4 cut(s)	177, 220, 229, 517
AjnI	CCWGG	1 cut(s)	853
Alw21I	GWGCWC	2 cut(s)	586, 952
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	4 cut(s)	103, 427, 734, 783
Aor51HI	AGCGCT	1 cut(s)	917
AoxI	GGCC	6 cut(s)	4, 20, 180, 306, 371, 501
ApaI	GGGCCC	1 cut(s)	24
ApeKI	GCWGC	6 cut(s)	435, 626, 818, 821, 1078, 1142
ApoI	RAATTY	2 cut(s)	172, 1107
ArsI	GACNNNNNNTTYG	6 cut(s)	88, 120, 703, 735, 1048, 1080
AseI	ATTAAT	2 cut(s)	350, 665
Asp700I	GAANNNNTTC	1 cut(s)	1029
AspLEI	GCGC	2 cut(s)	918, 1137
AspS9I	GGNCC	4 cut(s)	4, 20, 21, 181
AsuC2I	CCSGG	1 cut(s)	184
AsuHPI	GGTGA	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	24
BanII	GRGCYC	1 cut(s)	24
BbsI	GAAGAC	1 cut(s)	881
Bbv12I	GWGCWC	2 cut(s)	586, 952
BbvI	GCAGC	6 cut(s)	447, 613, 805, 808, 1065, 1154
BccI	CCATC	1 cut(s)	358
BceAI	ACGGC	1 cut(s)	488
BciT130I	CCWGG	1 cut(s)	855
BcnI	CCSGG	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	1 cut(s)	714
BfoI	RGCGCY	1 cut(s)	919
BfrI	CTTAAG	1 cut(s)	395
BisI	GCNGC	8 cut(s)	283, 374, 436, 627, 819, 822, 1079, 1143
BlsI	GCNGC	8 cut(s)	284, 375, 437, 628, 820, 823, 1080, 1144
Bme1390I	CCNGG	2 cut(s)	184, 855
BmgT120I	GGNCC	4 cut(s)	4, 20, 21, 181
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	2 cut(s)	184, 855
BmsI	GCATC	1 cut(s)	196
BpiI	GAAGAC	1 cut(s)	881
BpmI	CTGGAG	1 cut(s)	953
Bpu10I	CCTNAGC	1 cut(s)	161
BpuEI	CTTGAG	1 cut(s)	1106
BpuMI	CCSGG	1 cut(s)	184
BsaBI	GATNNNNATC	1 cut(s)	555
BsaJI	CCNNGG	1 cut(s)	1123
BsaXI	ACNNNNNCTCC	2 cut(s)	1044, 1074
Bsc4I	CCNNNNNNNGG	1 cut(s)	931
Bse8I	GATNNNNATC	1 cut(s)	555
BseBI	CCWGG	1 cut(s)	855
BseDI	CCNNGG	1 cut(s)	1123
BseGI	GGATG	1 cut(s)	952
BseJI	GATNNNNATC	1 cut(s)	555
BseLI	CCNNNNNNNGG	1 cut(s)	931
BseMII	CTCAG	1 cut(s)	958
BseRI	GAGGAG	2 cut(s)	356, 950
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	6 cut(s)	447, 613, 805, 808, 1065, 1154
BsgI	GTGCAG	1 cut(s)	612
Bsh1236I	CGCG	1 cut(s)	376
BshFI	GGCC	6 cut(s)	6, 22, 182, 308, 373, 503
BsiHKAI	GWGCWC	2 cut(s)	586, 952
BsiSI	CCGG	1 cut(s)	184
BslI	CCNNNNNNNGG	1 cut(s)	931
BsmAI	GTCTC	1 cut(s)	236
BsnI	GGCC	6 cut(s)	6, 22, 182, 308, 373, 503
Bsp120I	GGGCCC	1 cut(s)	20
Bsp1286I	GDGCHC	3 cut(s)	24, 586, 952
Bsp143I	GATC	6 cut(s)	101, 108, 383, 419, 739, 775
BspACI	CCGC	5 cut(s)	269, 283, 374, 539, 903
BspANI	GGCC	6 cut(s)	6, 22, 182, 308, 373, 503
BspCNI	CTCAG	1 cut(s)	957
BspFNI	CGCG	1 cut(s)	376
BspHI	TCATGA	1 cut(s)	360
BspLI	GGNNCC	1 cut(s)	22
BspPI	GGATC	4 cut(s)	103, 427, 734, 783
BspQI	GCTCTTC	1 cut(s)	1035
BspTI	CTTAAG	1 cut(s)	395
BssECI	CCNNGG	1 cut(s)	1123
BssMI	GATC	6 cut(s)	101, 108, 383, 419, 739, 775
Bst2UI	CCWGG	1 cut(s)	855
Bst6I	CTCTTC	2 cut(s)	46, 1035
BstAFI	CTTAAG	1 cut(s)	395
BstC8I	GCNNGC	6 cut(s)	8, 142, 371, 452, 534, 1047
BstDEI	CTNAG	5 cut(s)	161, 252, 337, 458, 944
BstF5I	GGATG	1 cut(s)	952
BstFNI	CGCG	1 cut(s)	376
BstH2I	RGCGCY	1 cut(s)	919
BstHHI	GCGC	2 cut(s)	918, 1137
BstKTI	GATC	6 cut(s)	104, 111, 386, 422, 742, 778
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	6 cut(s)	101, 108, 383, 419, 739, 775
BstMWI	GCNNNNNNNGC	6 cut(s)	44, 146, 538, 635, 734, 1042
BstNI	CCWGG	1 cut(s)	855
BstNSI	RCATGY	2 cut(s)	1049, 1135
BstSCI	CCNGG	2 cut(s)	182, 853
BstSLI	GKGCMC	1 cut(s)	24
BstUI	CGCG	1 cut(s)	376
BstV1I	GCAGC	6 cut(s)	447, 613, 805, 808, 1065, 1154
BstV2I	GAAGAC	1 cut(s)	881
BsuRI	GGCC	6 cut(s)	6, 22, 182, 308, 373, 503
BtsCI	GGATG	1 cut(s)	952
BtsIMutI	CAGTG	1 cut(s)	869
Cac8I	GCNNGC	6 cut(s)	8, 142, 371, 452, 534, 1047
CciI	TCATGA	1 cut(s)	360
CfoI	GCGC	2 cut(s)	918, 1137
Cfr13I	GGNCC	4 cut(s)	4, 20, 21, 181
Csp6I	GTAC	2 cut(s)	506, 1150
CviAII	CATG	7 cut(s)	361, 620, 682, 791, 926, 1046, 1132
CviQI	GTAC	2 cut(s)	506, 1150
DdeI	CTNAG	5 cut(s)	161, 252, 337, 458, 944
DpnI	GATC	6 cut(s)	103, 110, 385, 421, 741, 777
DpnII	GATC	6 cut(s)	101, 108, 383, 419, 739, 775
Eam1104I	CTCTTC	2 cut(s)	46, 1035
EarI	CTCTTC	2 cut(s)	46, 1035
Eco24I	GRGCYC	1 cut(s)	24
Eco47III	AGCGCT	1 cut(s)	917
Eco57I	CTGAAG	5 cut(s)	723, 765, 788, 893, 1016
EcoRII	CCWGG	1 cut(s)	853
EcoT38I	GRGCYC	1 cut(s)	24
FaeI	CATG	7 cut(s)	364, 623, 685, 794, 929, 1049, 1135
FatI	CATG	7 cut(s)	360, 619, 681, 790, 925, 1045, 1131
Fnu4HI	GCNGC	8 cut(s)	283, 374, 436, 627, 819, 822, 1079, 1143
FokI	GGATG	1 cut(s)	939
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	8 cut(s)	283, 374, 436, 627, 819, 822, 1079, 1143
FspBI	CTAG	1 cut(s)	714
FspI	TGCGCA	1 cut(s)	1136
GlaI	GCGC	2 cut(s)	917, 1136
GluI	GCNGC	8 cut(s)	283, 374, 436, 627, 819, 822, 1079, 1143
GsuI	CTGGAG	1 cut(s)	953
HaeII	RGCGCY	1 cut(s)	919
HaeIII	GGCC	6 cut(s)	6, 22, 182, 308, 373, 503
HapII	CCGG	1 cut(s)	184
HhaI	GCGC	2 cut(s)	918, 1137
Hin1II	CATG	7 cut(s)	364, 623, 685, 794, 929, 1049, 1135
Hin6I	GCGC	2 cut(s)	916, 1135
HinP1I	GCGC	2 cut(s)	916, 1135
HindIII	AAGCTT	4 cut(s)	334, 392, 705, 1175
HinfI	GANTC	4 cut(s)	76, 197, 216, 551
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	1 cut(s)	159
Hpy166II	GTNNAC	1 cut(s)	660
Hpy188I	TCNGA	6 cut(s)	215, 561, 703, 768, 947, 1127
Hpy188III	TCNNGA	7 cut(s)	233, 361, 514, 723, 743, 1068, 1085
Hpy8I	GTNNAC	1 cut(s)	660
HpyAV	CCTTC	3 cut(s)	298, 372, 660
HpyCH4V	TGCA	5 cut(s)	435, 482, 629, 824, 1049
HpyF10VI	GCNNNNNNNGC	6 cut(s)	44, 146, 538, 635, 734, 1042
HpyF3I	CTNAG	5 cut(s)	161, 252, 337, 458, 944
Hsp92II	CATG	7 cut(s)	364, 623, 685, 794, 929, 1049, 1135
HspAI	GCGC	2 cut(s)	916, 1135
Kzo9I	GATC	6 cut(s)	101, 108, 383, 419, 739, 775
LguI	GCTCTTC	1 cut(s)	1035
LmnI	GCTCC	1 cut(s)	881
Lsp1109I	GCAGC	6 cut(s)	447, 613, 805, 808, 1065, 1154
LweI	GCATC	1 cut(s)	196
MaeI	CTAG	1 cut(s)	714
MalI	GATC	6 cut(s)	103, 110, 385, 421, 741, 777
MboI	GATC	6 cut(s)	101, 108, 383, 419, 739, 775
MboII	GAAGA	7 cut(s)	40, 63, 136, 423, 845, 886, 1022
MhlI	GDGCHC	3 cut(s)	24, 586, 952
MlyI	GAGTC	1 cut(s)	85
MmeI	TCCRAC	2 cut(s)	193, 753
MnlI	CCTC	9 cut(s)	57, 313, 334, 337, 398, 493, 928, 1092, 1133
MroXI	GAANNNNTTC	1 cut(s)	1029
MslI	CAYNNNNRTG	1 cut(s)	957
MspA1I	CMGCKG	1 cut(s)	737
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	2 cut(s)	184, 855
MvaI	CCWGG	1 cut(s)	855
MvnI	CGCG	1 cut(s)	376
MwoI	GCNNNNNNNGC	6 cut(s)	44, 146, 538, 635, 734, 1042
NciI	CCSGG	1 cut(s)	184
NdeII	GATC	6 cut(s)	101, 108, 383, 419, 739, 775
NlaIII	CATG	7 cut(s)	364, 623, 685, 794, 929, 1049, 1135
NlaIV	GGNNCC	1 cut(s)	22
NsbI	TGCGCA	1 cut(s)	1136
NspI	RCATGY	2 cut(s)	1049, 1135
PaeI	GCATGC	1 cut(s)	1049
PagI	TCATGA	1 cut(s)	360
PciSI	GCTCTTC	1 cut(s)	1035
PdmI	GAANNNNTTC	1 cut(s)	1029
PfeI	GAWTC	3 cut(s)	197, 216, 551
PflMI	CCANNNNNTGG	1 cut(s)	931
PkrI	GCNGC	8 cut(s)	284, 375, 437, 628, 820, 823, 1080, 1144
PleI	GAGTC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	84
PshBI	ATTAAT	2 cut(s)	350, 665
Psp6I	CCWGG	1 cut(s)	853
PspGI	CCWGG	1 cut(s)	853
PspN4I	GGNNCC	1 cut(s)	22
PspOMI	GGGCCC	1 cut(s)	20
PspPI	GGNCC	4 cut(s)	4, 20, 21, 181
PvuII	CAGCTG	1 cut(s)	737
RsaI	GTAC	2 cut(s)	507, 1151
RsaNI	GTAC	2 cut(s)	506, 1150
RseI	CAYNNNNRTG	1 cut(s)	957
SapI	GCTCTTC	1 cut(s)	1035
SatI	GCNGC	8 cut(s)	283, 374, 436, 627, 819, 822, 1079, 1143
Sau3AI	GATC	6 cut(s)	101, 108, 383, 419, 739, 775
Sau96I	GGNCC	4 cut(s)	4, 20, 21, 181
SchI	GAGTC	1 cut(s)	85
ScrFI	CCNGG	2 cut(s)	184, 855
SduI	GDGCHC	3 cut(s)	24, 586, 952
SfaNI	GCATC	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	957
SmlI	CTYRAG	2 cut(s)	395, 1085
SmoI	CTYRAG	2 cut(s)	395, 1085
SphI	GCATGC	1 cut(s)	1049
SsiI	CCGC	5 cut(s)	269, 283, 374, 539, 903
SspMI	CTAG	1 cut(s)	714
StyD4I	CCNGG	2 cut(s)	182, 853
TaqI	TCGA	4 cut(s)	200, 469, 710, 722
TatI	WGTACW	1 cut(s)	1149
TauI	GCSGC	2 cut(s)	285, 376
TfiI	GAWTC	3 cut(s)	197, 216, 551
TscAI	CASTG	1 cut(s)	876
TseI	GCWGC	6 cut(s)	435, 626, 818, 821, 1078, 1142
TspDTI	ATGAA	8 cut(s)	349, 670, 825, 846, 909, 975, 1038, 1106
TspRI	CASTG	1 cut(s)	876
Van91I	CCANNNNNTGG	1 cut(s)	931
Vha464I	CTTAAG	1 cut(s)	395
VspI	ATTAAT	2 cut(s)	350, 665
XapI	RAATTY	2 cut(s)	172, 1107
XceI	RCATGY	2 cut(s)	1049, 1135
XcmI	CCANNNNNNNNNTGG	2 cut(s)	584, 851
XmnI	GAANNNNTTC	1 cut(s)	1029
XspI	CTAG	1 cut(s)	714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.