Rorug06G0238400

General transcription factor 3C polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0001600
Physical Location & Seq
Reverse (-)
38065163 .. 38066067
905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0238400.1

Sequence Viewer

Length: 726 bp
ATGGTGACATCTATAATGCTGAGGTGTGCCAGTTTTATGTTGTTTATGGTCTGGACGCTGTGTATATCATCGTCTCTGGCATGTACTGAAAAGCAGAAGCCGATAGGGTATGAGCAAAAATCCATGAAGGAGAGGTACGAAAGGTGGCTGACAAAATACGACCGAAGATACAAGAATAGAGAGGAGTGGGAATATCGTTTCGGAATTTACCAGTCCAACGTTGAGCTTGTTGATTTTGTAAATTCTCAAAACCTGTCATACAAACTCACTGACAACAAATTTGCAGACATGACAAACTTAGAGTTTACAAGAACCCACTTGGGTTTCCAAGCTGGTAGAAATCCAAAGACGAAGTTCAGGTATGAGTGGAAGAAGGACTTGCCAACTACAGTGGATTGGAGAAAGAATGGGAGCGTAACTCCGGTCAGGGATCAAGACCGATGTGGTAGCTGTTGGGCATTCTCTGCAGTTGCCGCTGTGGAAGGCCTTCACGAAATCAATACTGGAAAACTGGTGTCACTCTCGGAACAAGAGCTTGTGGACTGTGACGTACATACTGGGAACCAAGGTTGCAGTGGTGGATACATGGAAAATGCATTTGATTACATAAAAAAGTATGGACTCACCACTCAAGAAGATTATCCCTACACGTGTGTTTGGCGTTTGTTGATTCTCCACGAGCTTGATGAAGAACTTGGCAGAATCTTTGCTTTGTTGACAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6 TPR_7 TPR_8

Protein Analysis

241

Amino Acids

28.22

Weight (kDa)

6.45

Isoelectric Point (pI)

29.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 46 - 102 7e-14 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 127 - 217 6.5e-38 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 474
AclI AACGTT 1 cut(s) 219
AclWI GGATC 1 cut(s) 438
AcsI RAATTY 3 cut(s) 204, 241, 278
AcvI CACGTG 1 cut(s) 651
AfaI GTAC 3 cut(s) 85, 137, 552
AflIII ACRYGT 2 cut(s) 648, 650
AluBI AGCT 5 cut(s) 226, 332, 450, 535, 682
AluI AGCT 5 cut(s) 226, 332, 450, 535, 682
Alw26I GTCTC 1 cut(s) 78
AlwI GGATC 1 cut(s) 438
AoxI GGCC 1 cut(s) 484
ApoI RAATTY 3 cut(s) 204, 241, 278
ArsI GACNNNNNNTTYG 2 cut(s) 263, 295
Asp700I GAANNNNTTC 1 cut(s) 486
AsuHPI GGTGA 2 cut(s) 16, 616
BarI GAAGNNNNNNTAC 2 cut(s) 119, 151
BauI CACGAG 1 cut(s) 677
BbrPI CACGTG 1 cut(s) 651
BbvCI CCTCAGC 1 cut(s) 20
BciVI GTATCC 1 cut(s) 575
BcoDI GTCTC 1 cut(s) 78
BfmI CTRYAG 2 cut(s) 387, 465
BfuI GTATCC 1 cut(s) 575
BisI GCNGC 1 cut(s) 474
BlsI GCNGC 1 cut(s) 475
BmiI GGNNCC 1 cut(s) 563
BmrI ACTGGG 1 cut(s) 567
BmuI ACTGGG 1 cut(s) 567
BplI GAGNNNNNCTC 2 cut(s) 403, 435
Bpu10I CCTNAGC 1 cut(s) 20
BpuEI CTTGAG 1 cut(s) 615
BsaAI YACGTR 1 cut(s) 651
BsaJI CCNNGG 1 cut(s) 565
BsaWI WCCGGW 1 cut(s) 421
Bse1I ACTGG 5 cut(s) 30, 211, 508, 516, 562
BseDI CCNNGG 1 cut(s) 565
BseMII CTCAG 1 cut(s) 11
BseNI ACTGG 5 cut(s) 30, 211, 508, 516, 562
BseRI GAGGAG 1 cut(s) 197
Bsh1285I CGRYCG 1 cut(s) 163
BshFI GGCC 1 cut(s) 486
BsiEI CGRYCG 1 cut(s) 163
BsiSI CCGG 1 cut(s) 422
BsmAI GTCTC 1 cut(s) 78
BsmBI CGTCTC 1 cut(s) 78
BsmI GAATGC 1 cut(s) 458
BsnI GGCC 1 cut(s) 486
Bsp143I GATC 1 cut(s) 430
BspACI CCGC 1 cut(s) 474
BspANI GGCC 1 cut(s) 486
BspCNI CTCAG 1 cut(s) 12
BspLI GGNNCC 1 cut(s) 563
BspMAI CTGCAG 1 cut(s) 469
BspPI GGATC 1 cut(s) 438
BsrI ACTGG 5 cut(s) 30, 211, 508, 516, 562
BssECI CCNNGG 1 cut(s) 565
BssMI GATC 1 cut(s) 430
BssSI CACGAG 1 cut(s) 677
BssT1I CCWWGG 1 cut(s) 565
Bst2BI CACGAG 1 cut(s) 677
Bst4CI ACNGT 2 cut(s) 391, 545
BstAPI GCANNNNNTGC 1 cut(s) 464
BstBAI YACGTR 1 cut(s) 651
BstDEI CTNAG 2 cut(s) 20, 298
BstKTI GATC 1 cut(s) 433
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 1 cut(s) 430
BstMCI CGRYCG 1 cut(s) 163
BstMWI GCNNNNNNNGC 2 cut(s) 464, 473
BstNSI RCATGY 1 cut(s) 84
BstSFI CTRYAG 2 cut(s) 387, 465
BsuI GTATCC 1 cut(s) 575
BsuRI GGCC 1 cut(s) 486
BtsI GCAGTG 1 cut(s) 580
BtsIMutI CAGTG 3 cut(s) 267, 396, 580
CseI GACGC 1 cut(s) 64
Csp6I GTAC 3 cut(s) 84, 136, 551
CspCI CAANNNNNGTGG 2 cut(s) 372, 407
CviAII CATG 4 cut(s) 81, 124, 289, 586
CviJI RGCY 8 cut(s) 100, 148, 226, 332, 450, 486, 535, 682
CviKI_1 RGCY 8 cut(s) 100, 148, 226, 332, 450, 486, 535, 682
CviQI GTAC 3 cut(s) 84, 136, 551
DdeI CTNAG 2 cut(s) 20, 298
DpnI GATC 1 cut(s) 432
DpnII GATC 1 cut(s) 430
Eco130I CCWWGG 1 cut(s) 565
Eco147I AGGCCT 1 cut(s) 486
Eco72I CACGTG 1 cut(s) 651
EcoT14I CCWWGG 1 cut(s) 565
EcoT22I ATGCAT 1 cut(s) 598
ErhI CCWWGG 1 cut(s) 565
Esp3I CGTCTC 1 cut(s) 78
FaeI CATG 4 cut(s) 84, 127, 292, 589
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FatI CATG 4 cut(s) 80, 123, 288, 585
Fnu4HI GCNGC 1 cut(s) 474
Fsp4HI GCNGC 1 cut(s) 474
GluI GCNGC 1 cut(s) 474
HaeIII GGCC 1 cut(s) 486
HapII CCGG 1 cut(s) 422
HgaI GACGC 1 cut(s) 64
Hin1II CATG 4 cut(s) 84, 127, 292, 589
HincII GTYRAC 1 cut(s) 717
HindII GTYRAC 1 cut(s) 717
HinfI GANTC 3 cut(s) 621, 670, 702
HpaII CCGG 1 cut(s) 422
HphI GGTGA 2 cut(s) 16, 616
Hpy166II GTNNAC 3 cut(s) 306, 541, 717
Hpy188I TCNGA 2 cut(s) 203, 526
Hpy188III TCNNGA 4 cut(s) 52, 434, 491, 632
Hpy8I GTNNAC 3 cut(s) 306, 541, 717
HpyAV CCTTC 4 cut(s) 121, 367, 476, 497
HpyCH4III ACNGT 2 cut(s) 391, 545
HpyCH4IV ACGT 3 cut(s) 219, 549, 650
HpyCH4V TGCA 4 cut(s) 284, 467, 573, 596
HpyF10VI GCNNNNNNNGC 2 cut(s) 464, 473
HpyF3I CTNAG 2 cut(s) 20, 298
HpySE526I ACGT 3 cut(s) 219, 549, 650
Hsp92II CATG 4 cut(s) 84, 127, 292, 589
Kzo9I GATC 1 cut(s) 430
LmnI GCTCC 1 cut(s) 411
MaeII ACGT 3 cut(s) 219, 549, 650
MaeIII GTNAC 4 cut(s) 4, 415, 516, 545
MalI GATC 1 cut(s) 432
MboI GATC 1 cut(s) 430
MboII GAAGA 4 cut(s) 177, 382, 647, 701
MluCI AATT 3 cut(s) 204, 241, 278
MlyI GAGTC 1 cut(s) 615
MmeI TCCRAC 1 cut(s) 240
MnlI CCTC 3 cut(s) 15, 126, 175
Mph1103I ATGCAT 1 cut(s) 598
MroXI GAANNNNTTC 1 cut(s) 486
MspA1I CMGCKG 1 cut(s) 476
MspI CCGG 1 cut(s) 422
Mva1269I GAATGC 1 cut(s) 458
MwoI GCNNNNNNNGC 2 cut(s) 464, 473
NdeII GATC 1 cut(s) 430
NlaIII CATG 4 cut(s) 84, 127, 292, 589
NlaIV GGNNCC 1 cut(s) 563
NmuCI GTSAC 3 cut(s) 4, 516, 545
NsiI ATGCAT 1 cut(s) 598
NspI RCATGY 1 cut(s) 84
PceI AGGCCT 1 cut(s) 486
PctI GAATGC 1 cut(s) 458
PdmI GAANNNNTTC 1 cut(s) 486
PfeI GAWTC 2 cut(s) 670, 702
PkrI GCNGC 1 cut(s) 475
PleI GAGTC 1 cut(s) 615
PmaCI CACGTG 1 cut(s) 651
PmlI CACGTG 1 cut(s) 651
PpsI GAGTC 1 cut(s) 615
Ppu21I YACGTR 1 cut(s) 651
Psp1406I AACGTT 1 cut(s) 219
PspCI CACGTG 1 cut(s) 651
PspN4I GGNNCC 1 cut(s) 563
PstI CTGCAG 1 cut(s) 469
RsaI GTAC 3 cut(s) 85, 137, 552
RsaNI GTAC 3 cut(s) 84, 136, 551
SatI GCNGC 1 cut(s) 474
Sau3AI GATC 1 cut(s) 430
SchI GAGTC 1 cut(s) 615
SfcI CTRYAG 2 cut(s) 387, 465
SmlI CTYRAG 1 cut(s) 630
SmoI CTYRAG 1 cut(s) 630
Sse9I AATT 3 cut(s) 204, 241, 278
SseBI AGGCCT 1 cut(s) 486
SsiI CCGC 1 cut(s) 474
StuI AGGCCT 1 cut(s) 486
StyI CCWWGG 1 cut(s) 565
TaaI ACNGT 2 cut(s) 391, 545
TaiI ACGT 3 cut(s) 222, 552, 653
TaqII GACCGA 2 cut(s) 177, 453
TasI AATT 3 cut(s) 204, 241, 278
TatI WGTACW 1 cut(s) 83
TauI GCSGC 1 cut(s) 476
TfiI GAWTC 2 cut(s) 670, 702
TscAI CASTG 3 cut(s) 274, 396, 580
TseFI GTSAC 3 cut(s) 4, 516, 545
Tsp45I GTSAC 3 cut(s) 4, 516, 545
TspDTI ATGAA 2 cut(s) 140, 702
TspRI CASTG 3 cut(s) 274, 396, 580
XapI RAATTY 3 cut(s) 204, 241, 278
XceI RCATGY 1 cut(s) 84
XcmI CCANNNNNNNNNTGG 1 cut(s) 572
XmnI GAANNNNTTC 1 cut(s) 486
Zsp2I ATGCAT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.