MD17G1140900.v1.1

General transcription factor 3C polypeptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0001600
Physical Location & Seq
Forward (+)
12664322 .. 12665009
688 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1140900.v1.1.491

Sequence Viewer

Length: 396 bp
ATGGATAATGAGGAGAATGCTACTGGTGATGGTGATCATGGGGAGGCTTTAGGGTATGCACGTGTTGTGGGTCCCGAAGAAGACATGGAAGAAGATGTCGAGGATGACGAAGAGGATGAGGAAGATGAGGAGGTGGAGGAAGACATTGGGGATGAGGAAGAGAATGTTTTGAGTTTTATAGATGGGATTAATCCTTTAGATTTTGTGGAAGATGATGGTGACCAACTTTATCAGCGACTTCTGGGGACAGATTACAAGGCATTAGCCGAGAGAAAGAGAAAAGCACTTGTGGATAGCAGGCCCGAAGGTTCAGCTAAGAAGGGCAGGCAAGAGGATCTTACTGGAGCAAGCATGGAGGAAATAATGGAGGCCATGAATTATGGTATGCAAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_16 TPR_19 TPR_6 TPR_7 TPR_8

Protein Analysis

132

Amino Acids

14.74

Weight (kDa)

4.05

Isoelectric Point (pI)

52.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 342
AcvI CACGTG 1 cut(s) 62
AflIII ACRYGT 1 cut(s) 61
AluBI AGCT 1 cut(s) 314
AluI AGCT 1 cut(s) 314
AlwI GGATC 1 cut(s) 342
AoxI GGCC 2 cut(s) 299, 369
AseI ATTAAT 1 cut(s) 189
AspS9I GGNCC 2 cut(s) 71, 300
AsuHPI GGTGA 3 cut(s) 38, 44, 230
AvaII GGWCC 1 cut(s) 71
BbrPI CACGTG 1 cut(s) 62
BbsI GAAGAC 2 cut(s) 87, 147
BccI CCATC 3 cut(s) 23, 176, 209
BclI TGATCA 1 cut(s) 34
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 2 cut(s) 71, 300
BmiI GGNNCC 2 cut(s) 72, 73
BpiI GAAGAC 2 cut(s) 87, 147
BpmI CTGGAG 1 cut(s) 363
BsaAI YACGTR 1 cut(s) 62
BsaBI GATNNNNATC 1 cut(s) 33
Bse1I ACTGG 2 cut(s) 28, 346
Bse8I GATNNNNATC 1 cut(s) 33
BseGI GGATG 3 cut(s) 109, 121, 157
BseJI GATNNNNATC 1 cut(s) 33
BseNI ACTGG 2 cut(s) 28, 346
BseRI GAGGAG 2 cut(s) 26, 143
BshFI GGCC 2 cut(s) 301, 371
BslFI GGGAC 2 cut(s) 57, 259
BsmFI GGGAC 2 cut(s) 57, 259
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 2 cut(s) 301, 371
Bsp143I GATC 2 cut(s) 34, 334
BspANI GGCC 2 cut(s) 301, 371
BspLI GGNNCC 2 cut(s) 72, 73
BspPI GGATC 1 cut(s) 342
BsrI ACTGG 2 cut(s) 28, 346
BssMI GATC 2 cut(s) 34, 334
Bst6I CTCTTC 2 cut(s) 105, 153
BstBAI YACGTR 1 cut(s) 62
BstC8I GCNNGC 3 cut(s) 299, 326, 349
BstDEI CTNAG 1 cut(s) 315
BstEII GGTNACC 1 cut(s) 218
BstF5I GGATG 3 cut(s) 109, 121, 157
BstKTI GATC 2 cut(s) 37, 337
BstMBI GATC 2 cut(s) 34, 334
BstPI GGTNACC 1 cut(s) 218
BstV2I GAAGAC 2 cut(s) 87, 147
BstX2I RGATCY 1 cut(s) 334
BstYI RGATCY 1 cut(s) 334
BsuRI GGCC 2 cut(s) 301, 371
BtsCI GGATG 3 cut(s) 109, 121, 157
Cac8I GCNNGC 3 cut(s) 299, 326, 349
Cfr13I GGNCC 2 cut(s) 71, 300
CviAII CATG 4 cut(s) 38, 85, 352, 373
CviJI RGCY 5 cut(s) 47, 266, 301, 314, 371
CviKI_1 RGCY 5 cut(s) 47, 266, 301, 314, 371
DdeI CTNAG 1 cut(s) 315
DpnI GATC 2 cut(s) 36, 336
DpnII GATC 2 cut(s) 34, 334
Eam1104I CTCTTC 2 cut(s) 105, 153
EarI CTCTTC 2 cut(s) 105, 153
Eco47I GGWCC 1 cut(s) 71
Eco72I CACGTG 1 cut(s) 62
Eco91I GGTNACC 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 71
EcoO65I GGTNACC 1 cut(s) 218
FaeI CATG 4 cut(s) 41, 88, 355, 376
FaiI YATR 8 cut(s) 39, 57, 86, 179, 353, 374, 381, 386
FalI AAGNNNNNCTT 2 cut(s) 321, 353
FaqI GGGAC 2 cut(s) 57, 259
FatI CATG 4 cut(s) 37, 84, 351, 372
FbaI TGATCA 1 cut(s) 34
FokI GGATG 3 cut(s) 116, 128, 164
GsuI CTGGAG 1 cut(s) 363
HaeIII GGCC 2 cut(s) 301, 371
Hin1II CATG 4 cut(s) 41, 88, 355, 376
HphI GGTGA 3 cut(s) 38, 44, 230
Hpy188III TCNNGA 1 cut(s) 74
HpyAV CCTTC 2 cut(s) 299, 313
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 2 cut(s) 59, 388
HpyF3I CTNAG 1 cut(s) 315
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 4 cut(s) 41, 88, 355, 376
KflI GGGWCCC 1 cut(s) 71
Ksp22I TGATCA 1 cut(s) 34
Kzo9I GATC 2 cut(s) 34, 334
LmnI GCTCC 1 cut(s) 344
LpnPI CCDG 5 cut(s) 9, 227, 283, 310, 327
MaeII ACGT 1 cut(s) 61
MaeIII GTNAC 1 cut(s) 218
MalI GATC 2 cut(s) 36, 336
MboI GATC 2 cut(s) 34, 334
MboII GAAGA 9 cut(s) 89, 92, 101, 104, 122, 134, 152, 170, 221
MflI RGATCY 1 cut(s) 334
MluCI AATT 1 cut(s) 376
MseI TTAA 1 cut(s) 189
Mva1269I GAATGC 1 cut(s) 22
NdeII GATC 2 cut(s) 34, 334
NlaIII CATG 4 cut(s) 41, 88, 355, 376
NlaIV GGNNCC 2 cut(s) 72, 73
NmeAIII GCCGAG 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 218
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PctI GAATGC 1 cut(s) 22
PmaCI CACGTG 1 cut(s) 62
PmlI CACGTG 1 cut(s) 62
Ppu21I YACGTR 1 cut(s) 62
PpuMI RGGWCCY 1 cut(s) 71
PshBI ATTAAT 1 cut(s) 189
Psp5II RGGWCCY 1 cut(s) 71
PspCI CACGTG 1 cut(s) 62
PspEI GGTNACC 1 cut(s) 218
PspN4I GGNNCC 2 cut(s) 72, 73
PspPI GGNCC 2 cut(s) 71, 300
PspPPI RGGWCCY 1 cut(s) 71
PsuI RGATCY 1 cut(s) 334
SaqAI TTAA 1 cut(s) 189
Sau3AI GATC 2 cut(s) 34, 334
Sau96I GGNCC 2 cut(s) 71, 300
SetI ASST 5 cut(s) 64, 135, 310, 316, 395
SinI GGWCC 1 cut(s) 71
Sse9I AATT 1 cut(s) 376
TaiI ACGT 1 cut(s) 64
TaqI TCGA 1 cut(s) 99
TasI AATT 1 cut(s) 376
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TseFI GTSAC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 71
VspI ATTAAT 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.