FvH4_6g38050

General transcription factor 3C polypeptide

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
30110838 .. 30113553
2716 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g38050.t1

Sequence Viewer

Length: 1656 bp
ATGGATTATGAGGCTCTAGCTGAGAAAAAGCGAAAAGCACTTGTTGATAGCCGGCCCGGAGGTTCAATAAAGAAGGTCAGGCCGGATGATCTTTCTGGAGCAAGCATGGAGGAAATTATGGTGGCCATGAATTATGGTATGCAAAGGAGATCAAGGAAGCAGGCCATACCCATCTTGTCTGAAGTTATTATGAAAGCACCACATTTACCTGATGCATATCACACGCTTGGACTGGTCCATCACGCTCTTGGTCAAATTCCCAGAGCTATTTATTGCCTTTCAAGGGCAATAACAGTGGATCCTAAGAATATAAGTCTGAAATATTGTCGTGCTTCTCTGTATGTTAAGGTTAGAGATTACCGAAGAGGTGCCGCATCATATGAACATATAGTACAAACATGTCATGATGATGTTGCAGCACTCAAGACAGGGGCAAATATGTACAAACTATGTGGTCAGATTGAGCGTTCTGTTCATATTCTTGGGGAGTATCTCAAAAGTCATCCAACTGAACCTGATTTGAGTGTCATTGATCTTTTAGCTTCCAAGCTTATGCAAAATAATGCACACAGTGATGCTCTTCAGCATATTAAGCGCGCACAGTTAGTGTCTTGTTCTACAAAAGAGCTGCCTTTGGAAATGAAAGTTAAGGAAGGAATCTGCCATGCTTACCTAAGAAATTCGGAGAACGCAGAAATGCTCTTTAGTGCTCTCGAACAGAAAAGTGCAGAGCATGCTGAGTTGATTACTGAAGTTGCAGATTCATTCATGAGTCTAGAGCAATATAGCTCTGCATTGAATAACTCCGGCATCAGTATGAGCAGAGCTAACAGAGCGAAGAAGCTGCTTGAGAAGAAGGCGAAAGTTAAGGAAGAAAAGAGAGCAAAGGCGATGGCTGCTGGAGCTGACTGGCAAAGTGATGATTCAGATGAAGATCCTCCAGAAGAAATACATAAAGCATCTCCTCTCCTGGATCTTCTCAAGGATAAAGAAAGTTATGACCTCATAATAGATCTGTGCAAGTCACTGGCTTCCTTGCATGAGTATTGCGAAGTATTGGAGATTATAAATCTTGCTTTGAAGACCAGCATCCATACAGCTATGCTGCCTGGAATTGCTATTACAAAGTCATTACCAGATTTGATGACTGGGCATCACTTAACAAGAAAAAGCAGTAATCAAGATGCTGCCAGAGAATATCTTGAAGCTTATAAGTTACTGCCAGAGAATGCCTTAATTAATCTGTGTGTTGGTACCGCCTTAATCAACTTAGCACTGGGACTCAGACTTCAGAACAAGCACCAGTCTATTGCACAAGGTTTAGCATTCATCTACAACAATTTGCGACTTTGTGAAAACAGCCAGGAGGCTTTGTACAACCTAGCTAGGGCCTTCCACCACATTGGCCTTGTGACTCTTGCAGCAGTGTATTATCAACATGTTCTAGCAATTCGTCAGAAGGACTGCCCTCTCCCTAAACCTCCTCATGAGAACCAAGAGTCCGCTGAGAATCTATTACCAGAGTGGAGCAGTGGATCTTGCTCAAATGGTCCTTTAAGATCACTGCACCTTCTGAAAGATATGATCATCTTCTCAGATAGTTTGACTGTATTGAATGAGAGGAGGCGTCCTGCTCCATTTCTCTGGTTGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

552

Amino Acids

61.56

Weight (kDa)

7.62

Isoelectric Point (pI)

46.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1067, 1212
Acc65I GGTACC 1 cut(s) 1253
AccB1I GGYRCC 2 cut(s) 368, 1253
AccII CGCG 1 cut(s) 597
AciI CCGC 3 cut(s) 372, 1257, 1503
AclWI GGATC 5 cut(s) 293, 306, 929, 981, 1543
AcoI YGGCCR 1 cut(s) 123
AcsI RAATTY 2 cut(s) 255, 679
AcuI CTGAAG 4 cut(s) 201, 566, 771, 1274
AcyI GRCGYC 1 cut(s) 1627
AdeI CACNNNGTG 1 cut(s) 572
AfaI GTAC 4 cut(s) 393, 443, 1255, 1376
AfiI CCNNNNNNNGG 2 cut(s) 283, 1387
AflIII ACRYGT 2 cut(s) 398, 1438
AgsI TTSAA 6 cut(s) 66, 282, 799, 1081, 1205, 1615
AjnI CCWGG 3 cut(s) 969, 1108, 1362
AloI GAACNNNNNNTCC 2 cut(s) 1484, 1516
Alw21I GWGCWC 1 cut(s) 712
AlwI GGATC 5 cut(s) 293, 306, 929, 981, 1543
AoxI GGCC 6 cut(s) 53, 80, 123, 162, 1389, 1405
ApeKI GCWGC 7 cut(s) 416, 628, 844, 896, 1105, 1187, 1421
ApoI RAATTY 2 cut(s) 255, 679
AseI ATTAAT 1 cut(s) 1239
Asp718I GGTACC 1 cut(s) 1253
AspLEI GCGC 2 cut(s) 597, 599
AspS9I GGNCC 4 cut(s) 54, 235, 1389, 1550
AsuC2I CCSGG 1 cut(s) 57
AvaII GGWCC 2 cut(s) 235, 1550
BalI TGGCCA 1 cut(s) 125
BamHI GGATCC 1 cut(s) 298
BanI GGYRCC 2 cut(s) 368, 1253
BbsI GAAGAC 1 cut(s) 1088
Bbv12I GWGCWC 1 cut(s) 712
BbvI GCAGC 7 cut(s) 428, 615, 831, 883, 1092, 1174, 1433
BccI CCATC 3 cut(s) 179, 246, 886
BcgI CGANNNNNNTGC 2 cut(s) 826, 860
BciT130I CCWGG 3 cut(s) 971, 1110, 1364
BclI TGATCA 1 cut(s) 1584
BcnI CCSGG 1 cut(s) 57
BfaI CTAG 5 cut(s) 17, 776, 1382, 1386, 1445
BglII AGATCT 1 cut(s) 1012
BisI GCNGC 8 cut(s) 372, 417, 629, 845, 897, 1106, 1188, 1422
BlsI GCNGC 8 cut(s) 373, 418, 630, 846, 898, 1107, 1189, 1423
Bme1390I CCNGG 4 cut(s) 57, 971, 1110, 1364
Bme18I GGWCC 2 cut(s) 235, 1550
BmgT120I GGNCC 4 cut(s) 54, 235, 1389, 1550
BmiI GGNNCC 3 cut(s) 300, 370, 1255
BmrFI CCNGG 4 cut(s) 57, 971, 1110, 1364
BmrI ACTGGG 2 cut(s) 1158, 1286
BmsI GCATC 8 cut(s) 202, 383, 565, 819, 968, 1098, 1162, 1174
BmuI ACTGGG 2 cut(s) 1158, 1286
BpiI GAAGAC 1 cut(s) 1088
BpmI CTGGAG 3 cut(s) 117, 921, 924
BpuEI CTTGAG 3 cut(s) 407, 869, 965
BpuMI CCSGG 1 cut(s) 57
BsaBI GATNNNNATC 2 cut(s) 216, 933
BsaHI GRCGYC 1 cut(s) 1627
BsaXI ACNNNNNCTCC 2 cut(s) 1358, 1388
Bsc4I CCNNNNNNNGG 2 cut(s) 283, 1387
Bse118I RCCGGY 1 cut(s) 51
Bse1I ACTGG 6 cut(s) 237, 914, 1032, 1153, 1281, 1303
Bse8I GATNNNNATC 2 cut(s) 216, 933
BseBI CCWGG 3 cut(s) 971, 1110, 1364
BseGI GGATG 3 cut(s) 91, 502, 1089
BseJI GATNNNNATC 2 cut(s) 216, 933
BseLI CCNNNNNNNGG 2 cut(s) 283, 1387
BseMII CTCAG 5 cut(s) 12, 729, 1297, 1497, 1608
BseNI ACTGG 6 cut(s) 237, 914, 1032, 1153, 1281, 1303
BsePI GCGCGC 1 cut(s) 595
BseRI GAGGAG 3 cut(s) 954, 1473, 1636
BseXI GCAGC 7 cut(s) 428, 615, 831, 883, 1092, 1174, 1433
BsgI GTGCAG 2 cut(s) 747, 1550
Bsh1236I CGCG 1 cut(s) 597
BshFI GGCC 6 cut(s) 55, 82, 125, 164, 1391, 1407
BshNI GGYRCC 2 cut(s) 368, 1253
BsiHKAI GWGCWC 1 cut(s) 712
BsiSI CCGG 4 cut(s) 52, 57, 83, 807
BslFI GGGAC 1 cut(s) 1293
BslI CCNNNNNNNGG 2 cut(s) 283, 1387
BsmFI GGGAC 1 cut(s) 1293
BsmI GAATGC 2 cut(s) 1234, 1325
BsnI GGCC 6 cut(s) 55, 82, 125, 164, 1391, 1407
Bsp1286I GDGCHC 1 cut(s) 712
Bsp1407I TGTACA 2 cut(s) 441, 1374
BspACI CCGC 3 cut(s) 372, 1257, 1503
BspANI GGCC 6 cut(s) 55, 82, 125, 164, 1391, 1407
BspCNI CTCAG 5 cut(s) 13, 730, 1296, 1498, 1607
BspFNI CGCG 1 cut(s) 597
BspHI TCATGA 3 cut(s) 403, 768, 1486
BspLI GGNNCC 3 cut(s) 300, 370, 1255
BspPI GGATC 5 cut(s) 293, 306, 929, 981, 1543
BspQI GCTCTTC 1 cut(s) 585
BspT107I GGYRCC 2 cut(s) 368, 1253
BsrFI RCCGGY 1 cut(s) 51
BsrGI TGTACA 2 cut(s) 441, 1374
BsrI ACTGG 6 cut(s) 237, 914, 1032, 1153, 1281, 1303
BssAI RCCGGY 1 cut(s) 51
BssHII GCGCGC 1 cut(s) 595
BssNI GRCGYC 1 cut(s) 1627
Bst2UI CCWGG 3 cut(s) 971, 1110, 1364
Bst4CI ACNGT 4 cut(s) 295, 572, 603, 1609
Bst6I CTCTTC 2 cut(s) 358, 585
BstACI GRCGYC 1 cut(s) 1627
BstAPI GCANNNNNTGC 1 cut(s) 734
BstAUI TGTACA 2 cut(s) 441, 1374
BstC8I GCNNGC 5 cut(s) 53, 103, 162, 597, 735
BstDEI CTNAG 8 cut(s) 21, 303, 674, 738, 1270, 1283, 1506, 1594
BstF5I GGATG 3 cut(s) 91, 502, 1089
BstFNI CGCG 1 cut(s) 597
BstHHI GCGC 2 cut(s) 597, 599
BstMWI GCNNNNNNNGC 5 cut(s) 592, 734, 833, 896, 902
BstNI CCWGG 3 cut(s) 971, 1110, 1364
BstNSI RCATGY 3 cut(s) 402, 737, 1442
BstSCI CCNGG 4 cut(s) 55, 969, 1108, 1362
BstUI CGCG 1 cut(s) 597
BstV1I GCAGC 7 cut(s) 428, 615, 831, 883, 1092, 1174, 1433
BstV2I GAAGAC 1 cut(s) 1088
BstX2I RGATCY 5 cut(s) 298, 934, 973, 1012, 1535
BstXI CCANNNNNNTGG 2 cut(s) 1403, 1644
BstYI RGATCY 5 cut(s) 298, 934, 973, 1012, 1535
BsuRI GGCC 6 cut(s) 55, 82, 125, 164, 1391, 1407
BtgZI GCGATG 1 cut(s) 905
BtsCI GGATG 3 cut(s) 91, 502, 1089
BtsI GCAGTG 3 cut(s) 1431, 1537, 1562
BtsIMutI CAGTG 7 cut(s) 300, 577, 1025, 1274, 1431, 1537, 1562
Cac8I GCNNGC 5 cut(s) 53, 103, 162, 597, 735
CciI TCATGA 3 cut(s) 403, 768, 1486
CfoI GCGC 2 cut(s) 597, 599
Cfr10I RCCGGY 1 cut(s) 51
Cfr13I GGNCC 4 cut(s) 54, 235, 1389, 1550
CseI GACGC 1 cut(s) 1616
Csp6I GTAC 4 cut(s) 392, 442, 1254, 1375
CspCI CAANNNNNGTGG 4 cut(s) 276, 311, 433, 468
CviQI GTAC 4 cut(s) 392, 442, 1254, 1375
DdeI CTNAG 8 cut(s) 21, 303, 674, 738, 1270, 1283, 1506, 1594
DraIII CACNNNGTG 1 cut(s) 572
EaeI YGGCCR 1 cut(s) 123
Eam1104I CTCTTC 2 cut(s) 358, 585
EarI CTCTTC 2 cut(s) 358, 585
Eco47I GGWCC 2 cut(s) 235, 1550
Eco57I CTGAAG 4 cut(s) 201, 566, 771, 1274
EcoO109I RGGNCCY 1 cut(s) 1389
EcoRII CCWGG 3 cut(s) 969, 1108, 1362
EcoT22I ATGCAT 1 cut(s) 217
FaqI GGGAC 1 cut(s) 1293
FauNDI CATATG 1 cut(s) 379
FbaI TGATCA 1 cut(s) 1584
Fnu4HI GCNGC 8 cut(s) 372, 417, 629, 845, 897, 1106, 1188, 1422
FokI GGATG 3 cut(s) 98, 489, 1076
Fsp4HI GCNGC 8 cut(s) 372, 417, 629, 845, 897, 1106, 1188, 1422
FspBI CTAG 5 cut(s) 17, 776, 1382, 1386, 1445
GlaI GCGC 2 cut(s) 596, 598
GluI GCNGC 8 cut(s) 372, 417, 629, 845, 897, 1106, 1188, 1422
GsuI CTGGAG 3 cut(s) 117, 921, 924
HaeIII GGCC 6 cut(s) 55, 82, 125, 164, 1391, 1407
HapII CCGG 4 cut(s) 52, 57, 83, 807
HgaI GACGC 1 cut(s) 1616
HhaI GCGC 2 cut(s) 597, 599
Hin1I GRCGYC 1 cut(s) 1627
Hin6I GCGC 2 cut(s) 595, 597
HinP1I GCGC 2 cut(s) 595, 597
HindIII AAGCTT 2 cut(s) 548, 1206
HinfI GANTC 8 cut(s) 657, 761, 772, 923, 1281, 1414, 1499, 1510
HpaII CCGG 4 cut(s) 52, 57, 83, 807
HpyAV CCTTC 6 cut(s) 67, 647, 850, 1402, 1453, 1580
HpyCH4III ACNGT 4 cut(s) 295, 572, 603, 1609
HpyF10VI GCNNNNNNNGC 5 cut(s) 592, 734, 833, 896, 902
HpyF3I CTNAG 8 cut(s) 21, 303, 674, 738, 1270, 1283, 1506, 1594
Hsp92I GRCGYC 1 cut(s) 1627
HspAI GCGC 2 cut(s) 595, 597
KpnI GGTACC 1 cut(s) 1257
KroI GCCGGC 1 cut(s) 51
KroNI GCCGGC 1 cut(s) 53
Ksp22I TGATCA 1 cut(s) 1584
LguI GCTCTTC 1 cut(s) 585
LmnI GCTCC 4 cut(s) 98, 902, 1527, 1639
Lsp1109I GCAGC 7 cut(s) 428, 615, 831, 883, 1092, 1174, 1433
LweI GCATC 8 cut(s) 202, 383, 565, 819, 968, 1098, 1162, 1174
MaeI CTAG 5 cut(s) 17, 776, 1382, 1386, 1445
MaeIII GTNAC 3 cut(s) 1023, 1215, 1411
MflI RGATCY 5 cut(s) 298, 934, 973, 1012, 1535
MhlI GDGCHC 1 cut(s) 712
MlsI TGGCCA 1 cut(s) 125
MluCI AATT 8 cut(s) 114, 130, 255, 679, 1113, 1236, 1339, 1449
MluNI TGGCCA 1 cut(s) 125
MlyI GAGTC 4 cut(s) 781, 1275, 1408, 1508
MmeI TCCRAC 1 cut(s) 530
Mox20I TGGCCA 1 cut(s) 125
Mph1103I ATGCAT 1 cut(s) 217
MroNI GCCGGC 1 cut(s) 51
MscI TGGCCA 1 cut(s) 125
MseI TTAA 9 cut(s) 345, 591, 648, 867, 1160, 1235, 1239, 1262, 1556
MslI CAYNNNNRTG 3 cut(s) 408, 573, 815
Msp20I TGGCCA 1 cut(s) 125
MspA1I CMGCKG 1 cut(s) 1505
MspI CCGG 4 cut(s) 52, 57, 83, 807
MspR9I CCNGG 4 cut(s) 57, 971, 1110, 1364
Mva1269I GAATGC 2 cut(s) 1234, 1325
MvaI CCWGG 3 cut(s) 971, 1110, 1364
MvnI CGCG 1 cut(s) 597
MwoI GCNNNNNNNGC 5 cut(s) 592, 734, 833, 896, 902
NaeI GCCGGC 1 cut(s) 53
NciI CCSGG 1 cut(s) 57
NdeI CATATG 1 cut(s) 379
NgoMIV GCCGGC 1 cut(s) 51
NlaIV GGNNCC 3 cut(s) 300, 370, 1255
NmuCI GTSAC 2 cut(s) 1023, 1411
NsiI ATGCAT 1 cut(s) 217
NspI RCATGY 3 cut(s) 402, 737, 1442
PacI TTAATTAA 1 cut(s) 1239
PaeI GCATGC 1 cut(s) 737
PagI TCATGA 3 cut(s) 403, 768, 1486
PauI GCGCGC 1 cut(s) 595
PciI ACATGT 2 cut(s) 398, 1438
PciSI GCTCTTC 1 cut(s) 585
PctI GAATGC 2 cut(s) 1234, 1325
PdiI GCCGGC 1 cut(s) 53
PfeI GAWTC 4 cut(s) 657, 761, 923, 1510
PfoI TCCNGGA 1 cut(s) 969
PkrI GCNGC 8 cut(s) 373, 418, 630, 846, 898, 1107, 1189, 1423
PleI GAGTC 4 cut(s) 780, 1275, 1408, 1507
PpsI GAGTC 4 cut(s) 780, 1275, 1408, 1507
PscI ACATGT 2 cut(s) 398, 1438
PshBI ATTAAT 1 cut(s) 1239
PsiI TTATAA 2 cut(s) 1067, 1212
Psp6I CCWGG 3 cut(s) 969, 1108, 1362
PspGI CCWGG 3 cut(s) 969, 1108, 1362
PspN4I GGNNCC 3 cut(s) 300, 370, 1255
PspPI GGNCC 4 cut(s) 54, 235, 1389, 1550
PsrI GAACNNNNNNTAC 2 cut(s) 375, 407
PsuI RGATCY 5 cut(s) 298, 934, 973, 1012, 1535
PteI GCGCGC 1 cut(s) 595
RsaI GTAC 4 cut(s) 393, 443, 1255, 1376
RsaNI GTAC 4 cut(s) 392, 442, 1254, 1375
RseI CAYNNNNRTG 3 cut(s) 408, 573, 815
SapI GCTCTTC 1 cut(s) 585
SaqAI TTAA 9 cut(s) 345, 591, 648, 867, 1160, 1235, 1239, 1262, 1556
SatI GCNGC 8 cut(s) 372, 417, 629, 845, 897, 1106, 1188, 1422
Sau96I GGNCC 4 cut(s) 54, 235, 1389, 1550
SchI GAGTC 4 cut(s) 781, 1275, 1408, 1508
ScrFI CCNGG 4 cut(s) 57, 971, 1110, 1364
SduI GDGCHC 1 cut(s) 712
SfaNI GCATC 8 cut(s) 202, 383, 565, 819, 968, 1098, 1162, 1174
SinI GGWCC 2 cut(s) 235, 1550
SmiMI CAYNNNNRTG 3 cut(s) 408, 573, 815
SmlI CTYRAG 3 cut(s) 422, 848, 980
SmoI CTYRAG 3 cut(s) 422, 848, 980
SphI GCATGC 1 cut(s) 737
Sse9I AATT 8 cut(s) 114, 130, 255, 679, 1113, 1236, 1339, 1449
SsiI CCGC 3 cut(s) 372, 1257, 1503
SspI AATATT 1 cut(s) 323
SspMI CTAG 5 cut(s) 17, 776, 1382, 1386, 1445
StyD4I CCNGG 4 cut(s) 55, 969, 1108, 1362
TaaI ACNGT 4 cut(s) 295, 572, 603, 1609
TaqI TCGA 1 cut(s) 714
TasI AATT 8 cut(s) 114, 130, 255, 679, 1113, 1236, 1339, 1449
TatI WGTACW 3 cut(s) 391, 441, 1374
TauI GCSGC 1 cut(s) 374
TfiI GAWTC 4 cut(s) 657, 761, 923, 1510
Tru1I TTAA 9 cut(s) 345, 591, 648, 867, 1160, 1235, 1239, 1262, 1556
Tru9I TTAA 9 cut(s) 345, 591, 648, 867, 1160, 1235, 1239, 1262, 1556
TscAI CASTG 7 cut(s) 300, 577, 1032, 1281, 1431, 1537, 1569
TseFI GTSAC 2 cut(s) 1023, 1411
TseI GCWGC 7 cut(s) 416, 628, 844, 896, 1105, 1187, 1421
Tsp45I GTSAC 2 cut(s) 1023, 1411
TspDTI ATGAA 9 cut(s) 143, 206, 396, 464, 656, 753, 757, 945, 1318
TspRI CASTG 7 cut(s) 300, 577, 1032, 1281, 1431, 1537, 1569
VpaK11BI GGWCC 2 cut(s) 235, 1550
VspI ATTAAT 1 cut(s) 1239
XapI RAATTY 2 cut(s) 255, 679
XbaI TCTAGA 1 cut(s) 775
XceI RCATGY 3 cut(s) 402, 737, 1442
XcmI CCANNNNNNNNNTGG 1 cut(s) 245
XspI CTAG 5 cut(s) 17, 776, 1382, 1386, 1445
Zsp2I ATGCAT 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.