Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001600

Physical Location & Seq

Genomic Coordinates Forward (+)

54592048 .. 54595680

Gene Structure 3633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0424400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTCCAATCTGGGCCTTTTCGTCTTCCTCTTCACTTTCTTCATCGCCATCCCTTTCTTTGTTTTCGTAAAGCTGAGGAAAACAGAGCACAAGCAACAGACCCAGAATGACCTGTTTGAACTAAAGCGGTTTCTGTCCGAGACTTTGGCCGAGACCACTCAGGTAGGCAATGAAAATGACCCGACCCATTTGGCCCAAAAAGGGTCGGGCTCGGAGGACGAGGAGAGGGAAGGGTCCGGCGGCAATGAGAAAGTGAAAAAGAAGAGGAGGGCCAAGAAGAAGAATACATCACATTTGGAACAAGATGGCGGTGGTGGGGAGGATATGAGTGAGAAAGGGAATTCGGGTCCTCAGATCAAGGCTGATGTGGTGTGTTTCTACCCGTTTACGTCATCCACTAGTGCTACACAAAGAAAGATCAAGAAACAATATGATGAGCTTATGAAGTGTAATGCATCCAAGAAATTGACGCTCTCTCAGGTTGGACAGTTTGCTACTTGCTTAGTTGAGGCTAGAAATGAGCTACAGCACAAGGCTGATGCCATTCAGCGTAAATTCACAATAAGAAAGGCTTTACTATACAAGGCAGATAGATCTTCTTTTGACCGCCTTCGTAAACAGATATGCAAGCTAGAATTAGAACAGAAGAGACTGGAAGAGGATGCATCTGTCTACAATTGGCTCCAACAACAGCTTAAGCTTTCACCAGCATACAAGAAGATGCTTGAAACTAGTGCCTGCACGGAGTTGAAGACCAAATCGAGAGAGCAAATGGAGAGTAAAGATGTGGAGTTTACTGGAATTTCATTTGAAGATTTCCTGGCACAAGAAAAGAAGGATTCATTCTGGCAGAAAAACATGAAATCAAGATCATGCTCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_6 TPR_7 TPR_8

Protein Analysis

294

Amino Acids

33.77

Weight (kDa)

9.24

Isoelectric Point (pI)

51.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17680 AT1G17680 AT1G17680
fragaria_vesca	FvH4_2g25610 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38050
malus_domestica	MD09G1155000.v1.1 MD17G1140900.v1.1 MD17G1141000.v1.1 MD17G1141100.v1.1
prunus_persica	Prupe.8G070000_v2.0.a1
pyrus_communis	pycom09g07370 pycom09g07380 pycom17g13410 pycom17g13440
rosa_chinensis	RchiOBHm_Chr2g0151071 RchiOBHm_Chr2g0151101 RchiOBHm_Chr6g0293861
rosa_laevigata	RLG00000011917 RLG00000020527 RLG00000020529
rosa_multiflora	Rmu_co8508109.1_g000001 Rmu_ssc0000470.1_g000002
rosa_roxburghii	Rroxscaffold_2G00096730 Rroxscaffold_7G00173850
rosa_rugosa	Rorug02G0424200 Rorug02G0424300 Rorug02G0424400 Rorug02G0424500 Rorug06G0238400
rosa_samantha	Rh2AG484900 Rh2BG497200 Rh2CG471000 Rh2DG508100 Rh6AG352000 Rh6BG358800 Rh6CG366100 Rh6CG366200 Rh6DG352800
rosa_wichuraiana	Rw2G039740 Rw6G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	672
AciI	CCGC	4 cut(s)	127, 240, 309, 607
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	3 cut(s)	340, 554, 801
AfiI	CCNNNNNNNGG	1 cut(s)	201
AflII	CTTAAG	1 cut(s)	695
AgsI	TTSAA	4 cut(s)	119, 728, 751, 812
AhlI	ACTAGT	2 cut(s)	398, 731
AjnI	CCWGG	1 cut(s)	819
AluBI	AGCT	7 cut(s)	73, 439, 523, 631, 694, 700, 882
AluI	AGCT	7 cut(s)	73, 439, 523, 631, 694, 700, 882
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	3 cut(s)	134, 146, 643
AoxI	GGCC	4 cut(s)	13, 147, 192, 270
ApoI	RAATTY	3 cut(s)	340, 554, 801
AspS9I	GGNCC	5 cut(s)	13, 193, 234, 270, 347
AsuHPI	GGTGA	1 cut(s)	696
AvaII	GGWCC	2 cut(s)	234, 347
BanII	GRGCYC	1 cut(s)	212
BbsI	GAAGAC	2 cut(s)	16, 758
Bbv12I	GWGCWC	1 cut(s)	90
BbvCI	CCTCAGC	1 cut(s)	74
BccI	CCATC	2 cut(s)	56, 299
BciT130I	CCWGG	1 cut(s)	821
BcoDI	GTCTC	3 cut(s)	134, 146, 643
BcuI	ACTAGT	2 cut(s)	398, 731
BfaI	CTAG	4 cut(s)	399, 513, 632, 732
BfmI	CTRYAG	1 cut(s)	524
BfrI	CTTAAG	1 cut(s)	695
BglII	AGATCT	1 cut(s)	593
BisI	GCNGC	1 cut(s)	241
BlsI	GCNGC	1 cut(s)	242
Bme1390I	CCNGG	1 cut(s)	821
Bme18I	GGWCC	2 cut(s)	234, 347
BmgT120I	GGNCC	5 cut(s)	13, 193, 234, 270, 347
BmiI	GGNNCC	3 cut(s)	235, 348, 683
BmrFI	CCNGG	1 cut(s)	821
BmsI	GCATC	5 cut(s)	464, 529, 652, 674, 711
BpiI	GAAGAC	2 cut(s)	16, 758
Bpu10I	CCTNAGC	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	862
BsaI	GGTCTC	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	1 cut(s)	201
Bse1I	ACTGG	2 cut(s)	657, 802
Bse3DI	GCAATG	2 cut(s)	175, 250
BseBI	CCWGG	1 cut(s)	821
BseGI	GGATG	4 cut(s)	48, 392, 455, 667
BseLI	CCNNNNNNNGG	1 cut(s)	201
BseMI	GCAATG	2 cut(s)	175, 250
BseMII	CTCAG	4 cut(s)	65, 173, 365, 491
BseNI	ACTGG	2 cut(s)	657, 802
BseRI	GAGGAG	2 cut(s)	236, 280
BsgI	GTGCAG	1 cut(s)	724
BshFI	GGCC	4 cut(s)	15, 149, 194, 272
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	201
BsmAI	GTCTC	3 cut(s)	134, 146, 643
BsnI	GGCC	4 cut(s)	15, 149, 194, 272
Bso31I	GGTCTC	1 cut(s)	146
Bsp1286I	GDGCHC	2 cut(s)	90, 212
Bsp143I	GATC	4 cut(s)	354, 417, 593, 869
BspACI	CCGC	4 cut(s)	127, 240, 309, 607
BspANI	GGCC	4 cut(s)	15, 149, 194, 272
BspCNI	CTCAG	4 cut(s)	66, 172, 364, 490
BspLI	GGNNCC	3 cut(s)	235, 348, 683
BspTI	CTTAAG	1 cut(s)	695
BspTNI	GGTCTC	1 cut(s)	146
BsrDI	GCAATG	2 cut(s)	175, 250
BsrI	ACTGG	2 cut(s)	657, 802
BssMI	GATC	4 cut(s)	354, 417, 593, 869
Bst2UI	CCWGG	1 cut(s)	821
Bst4CI	ACNGT	1 cut(s)	489
Bst6I	CTCTTC	4 cut(s)	35, 257, 641, 651
BstAFI	CTTAAG	1 cut(s)	695
BstC8I	GCNNGC	2 cut(s)	629, 739
BstDEI	CTNAG	5 cut(s)	74, 159, 351, 477, 502
BstF5I	GGATG	4 cut(s)	48, 392, 455, 667
BstKTI	GATC	4 cut(s)	357, 420, 596, 872
BstMAI	GTCTC	3 cut(s)	134, 146, 643
BstMBI	GATC	4 cut(s)	354, 417, 593, 869
BstNI	CCWGG	1 cut(s)	821
BstSCI	CCNGG	1 cut(s)	819
BstSFI	CTRYAG	1 cut(s)	524
BstV2I	GAAGAC	2 cut(s)	16, 758
BstX2I	RGATCY	1 cut(s)	593
BstYI	RGATCY	1 cut(s)	593
BsuRI	GGCC	4 cut(s)	15, 149, 194, 272
BtgZI	GCGATG	1 cut(s)	28
BtsCI	GGATG	4 cut(s)	48, 392, 455, 667
Cac8I	GCNNGC	2 cut(s)	629, 739
Cfr13I	GGNCC	5 cut(s)	13, 193, 234, 270, 347
CseI	GACGC	1 cut(s)	478
CviAII	CATG	2 cut(s)	859, 873
DdeI	CTNAG	5 cut(s)	74, 159, 351, 477, 502
DpnI	GATC	4 cut(s)	356, 419, 595, 871
DpnII	GATC	4 cut(s)	354, 417, 593, 869
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	4 cut(s)	35, 257, 641, 651
EarI	CTCTTC	4 cut(s)	35, 257, 641, 651
Eco24I	GRGCYC	1 cut(s)	212
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	2 cut(s)	234, 347
EcoO109I	RGGNCCY	1 cut(s)	347
EcoRI	GAATTC	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	819
EcoT22I	ATGCAT	2 cut(s)	457, 667
EcoT38I	GRGCYC	1 cut(s)	212
FaeI	CATG	2 cut(s)	862, 876
FaiI	YATR	8 cut(s)	326, 432, 443, 580, 625, 712, 860, 874
FalI	AAGNNNNNCTT	2 cut(s)	556, 588
FatI	CATG	2 cut(s)	858, 872
FblI	GTMKAC	1 cut(s)	672
Fnu4HI	GCNGC	1 cut(s)	241
FokI	GGATG	4 cut(s)	35, 379, 442, 674
FriOI	GRGCYC	1 cut(s)	212
Fsp4HI	GCNGC	1 cut(s)	241
FspBI	CTAG	4 cut(s)	399, 513, 632, 732
GluI	GCNGC	1 cut(s)	241
HaeIII	GGCC	4 cut(s)	15, 149, 194, 272
HapII	CCGG	1 cut(s)	237
HgaI	GACGC	1 cut(s)	478
Hin1II	CATG	2 cut(s)	862, 876
HindIII	AAGCTT	1 cut(s)	698
HinfI	GANTC	1 cut(s)	839
HpaII	CCGG	1 cut(s)	237
HphI	GGTGA	1 cut(s)	696
Hpy166II	GTNNAC	4 cut(s)	387, 617, 673, 795
Hpy188I	TCNGA	3 cut(s)	139, 214, 354
Hpy188III	TCNNGA	3 cut(s)	421, 762, 867
Hpy8I	GTNNAC	4 cut(s)	387, 617, 673, 795
HpyAV	CCTTC	3 cut(s)	224, 620, 829
HpyCH4III	ACNGT	1 cut(s)	489
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	4 cut(s)	455, 627, 665, 741
HpyF3I	CTNAG	5 cut(s)	74, 159, 351, 477, 502
HpySE526I	ACGT	1 cut(s)	389
Hsp92II	CATG	2 cut(s)	862, 876
Kzo9I	GATC	4 cut(s)	354, 417, 593, 869
LmnI	GCTCC	1 cut(s)	687
LweI	GCATC	5 cut(s)	464, 529, 652, 674, 711
MaeI	CTAG	4 cut(s)	399, 513, 632, 732
MaeII	ACGT	1 cut(s)	389
MalI	GATC	4 cut(s)	356, 419, 595, 871
MboI	GATC	4 cut(s)	354, 417, 593, 869
MfeI	CAATTG	1 cut(s)	676
MflI	RGATCY	1 cut(s)	593
MhlI	GDGCHC	2 cut(s)	90, 212
MluCI	AATT	6 cut(s)	340, 464, 554, 635, 676, 801
MmeI	TCCRAC	2 cut(s)	463, 709
Mph1103I	ATGCAT	2 cut(s)	457, 667
MseI	TTAA	1 cut(s)	696
MspCI	CTTAAG	1 cut(s)	695
MspI	CCGG	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	821
MunI	CAATTG	1 cut(s)	676
MvaI	CCWGG	1 cut(s)	821
NdeII	GATC	4 cut(s)	354, 417, 593, 869
NlaIII	CATG	2 cut(s)	862, 876
NlaIV	GGNNCC	3 cut(s)	235, 348, 683
NmeAIII	GCCGAG	1 cut(s)	175
NsiI	ATGCAT	2 cut(s)	457, 667
PfeI	GAWTC	1 cut(s)	839
PkrI	GCNGC	1 cut(s)	242
PpuMI	RGGWCCY	1 cut(s)	347
Psp5II	RGGWCCY	1 cut(s)	347
Psp6I	CCWGG	1 cut(s)	819
PspGI	CCWGG	1 cut(s)	819
PspN4I	GGNNCC	3 cut(s)	235, 348, 683
PspPI	GGNCC	5 cut(s)	13, 193, 234, 270, 347
PspPPI	RGGWCCY	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	593
SaqAI	TTAA	1 cut(s)	696
SatI	GCNGC	1 cut(s)	241
Sau3AI	GATC	4 cut(s)	354, 417, 593, 869
Sau96I	GGNCC	5 cut(s)	13, 193, 234, 270, 347
ScrFI	CCNGG	1 cut(s)	821
SduI	GDGCHC	2 cut(s)	90, 212
SfaNI	GCATC	5 cut(s)	464, 529, 652, 674, 711
SfcI	CTRYAG	1 cut(s)	524
SinI	GGWCC	2 cut(s)	234, 347
SmlI	CTYRAG	2 cut(s)	695, 877
SmoI	CTYRAG	2 cut(s)	695, 877
SpeI	ACTAGT	2 cut(s)	398, 731
Sse9I	AATT	6 cut(s)	340, 464, 554, 635, 676, 801
SsiI	CCGC	4 cut(s)	127, 240, 309, 607
SspMI	CTAG	4 cut(s)	399, 513, 632, 732
StyD4I	CCNGG	1 cut(s)	819
TaaI	ACNGT	1 cut(s)	489
TaiI	ACGT	1 cut(s)	392
TaqI	TCGA	1 cut(s)	761
TasI	AATT	6 cut(s)	340, 464, 554, 635, 676, 801
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	1 cut(s)	839
Tru1I	TTAA	1 cut(s)	696
Tru9I	TTAA	1 cut(s)	696
TspDTI	ATGAA	6 cut(s)	31, 186, 458, 795, 831, 875
TspGWI	ACGGA	1 cut(s)	758
Vha464I	CTTAAG	1 cut(s)	695
VpaK11BI	GGWCC	2 cut(s)	234, 347
XapI	RAATTY	3 cut(s)	340, 554, 801
XmiI	GTMKAC	1 cut(s)	672
XspI	CTAG	4 cut(s)	399, 513, 632, 732
Zsp2I	ATGCAT	2 cut(s)	457, 667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.