Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001600

Physical Location & Seq

Genomic Coordinates Forward (+)

12666357 .. 12668331

Gene Structure 1975 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1141100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCTTTTGGAGTTGACTGGCAAAGTGATGATTCAGATGATGATCCTCTAGAAGAAAAACATAAAGAACCTCCCTTGCCAGATCTTCTCAAGGACAAAGAGCATAACGGCCTCATAATAGACTTATGTAAGTCATTGGCTTCCTTGCAAAGATATTGCGAAGCATTGGAGATAATAAATCTTTTTTTGAAAGTAACTCGCAACACATCTTCTGTTGCGGAGGAACTCCGGTCTCTTGGAGCTCAAATTGCATACAACACTCCTGATCCTGAGCATGGGGTTAGCTGTGTAAAATACATTGTGGACCTGCATCCATATAGAAATGCTGCCTGGAAATGCTATTACAAGGTAATTAGCAGATTAGATGACTGGTATGCAAGGCATTACAAGTTTCTACGCAATAAGAGAGACAAACTCAGAAACTGTGCACCTCCCAGTCTCATTTCTGGGCATCATTTTACTAAAAAAAGCCGTCATCAAGATGCTGCGAGGGAATACCTTGAAGCTGATAAATTATTGCCGGAGAATCCCCTGATTAATCTATGTGTTGGTACTGCTTTAATCAACTTATCCCTTGGACATAGACTTCAGAATAGGCACCAGTGTGTTGTACAAGGATTAGCATTCCTCCACAACAATTTGCAGCTTTGTGAATTCAGCCAGGAGGCTTTCTACAACGTAGCCAGGGCTTACCATCAGGTCGGCATTGTGACTCTGGCAGCTTGGCATTATGACAAAGTTCTTGCAATGCAAGTGAAGGATTACCCCATGCCAAAGCTTCCGCATGAAAAGCCAGAGTCTGCTGAAAATCGAAAACTGGGTTACTGTGACCTTCGAAGAGAAGCAGCTTATAATTTGCATCTCATCTACAAAAAGAGTGGAGCGGTTGATCTTGCTCGAACCGTCTTAAGAGATCACTGCACTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_6 TPR_7 TPR_8

Protein Analysis

310

Amino Acids

35.64

Weight (kDa)

7.99

Isoelectric Point (pI)

40.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17680 AT1G17680 AT1G17680
fragaria_vesca	FvH4_2g25610 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38050
malus_domestica	MD09G1155000.v1.1 MD17G1140900.v1.1 MD17G1141000.v1.1 MD17G1141100.v1.1
prunus_persica	Prupe.8G070000_v2.0.a1
pyrus_communis	pycom09g07370 pycom09g07380 pycom17g13410 pycom17g13440
rosa_chinensis	RchiOBHm_Chr2g0151071 RchiOBHm_Chr2g0151101 RchiOBHm_Chr6g0293861
rosa_laevigata	RLG00000011917 RLG00000020527 RLG00000020529
rosa_multiflora	Rmu_co8508109.1_g000001 Rmu_ssc0000470.1_g000002
rosa_roxburghii	Rroxscaffold_2G00096730 Rroxscaffold_7G00173850
rosa_rugosa	Rorug02G0424200 Rorug02G0424300 Rorug02G0424400 Rorug02G0424500 Rorug06G0238400
rosa_samantha	Rh2AG484900 Rh2BG497200 Rh2CG471000 Rh2DG508100 Rh6AG352000 Rh6BG358800 Rh6CG366100 Rh6CG366200 Rh6DG352800
rosa_wichuraiana	Rw2G039740 Rw6G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	852
Acc36I	ACCTGC	1 cut(s)	315
AccB1I	GGYRCC	1 cut(s)	597
AccBSI	CCGCTC	1 cut(s)	884
AciI	CCGC	3 cut(s)	218, 782, 884
AclWI	GGATC	2 cut(s)	38, 260
AcsI	RAATTY	1 cut(s)	653
AcuI	CTGAAG	1 cut(s)	572
AfaI	GTAC	2 cut(s)	553, 612
AfiI	CCNNNNNNNGG	1 cut(s)	275
AflII	CTTAAG	1 cut(s)	907
AgsI	TTSAA	2 cut(s)	190, 503
AjnI	CCWGG	3 cut(s)	329, 660, 683
AleI	CACNNNNGTG	1 cut(s)	603
AluBI	AGCT	7 cut(s)	242, 285, 506, 646, 722, 778, 848
AluI	AGCT	7 cut(s)	242, 285, 506, 646, 722, 778, 848
Alw21I	GWGCWC	2 cut(s)	244, 430
Alw26I	GTCTC	3 cut(s)	237, 402, 443
Alw44I	GTGCAC	1 cut(s)	426
AlwI	GGATC	2 cut(s)	38, 260
AlwNI	CAGNNNCTG	2 cut(s)	423, 800
AoxI	GGCC	1 cut(s)	109
ApaLI	GTGCAC	1 cut(s)	426
ApeKI	GCWGC	5 cut(s)	326, 485, 643, 719, 845
ApoI	RAATTY	1 cut(s)	653
AseI	ATTAAT	1 cut(s)	537
AspS9I	GGNCC	1 cut(s)	304
AsuII	TTCGAA	1 cut(s)	835
AvaII	GGWCC	1 cut(s)	304
BaeGI	GKGCMC	1 cut(s)	430
BanI	GGYRCC	1 cut(s)	597
BanII	GRGCYC	1 cut(s)	244
Bbv12I	GWGCWC	2 cut(s)	244, 430
BbvI	GCAGC	5 cut(s)	313, 472, 655, 731, 857
BccI	CCATC	1 cut(s)	702
BceAI	ACGGC	2 cut(s)	124, 456
BciT130I	CCWGG	3 cut(s)	331, 662, 685
BcoDI	GTCTC	3 cut(s)	237, 402, 443
BfaI	CTAG	1 cut(s)	50
BfrI	CTTAAG	1 cut(s)	907
BfuAI	ACCTGC	1 cut(s)	315
BglII	AGATCT	1 cut(s)	82
BisI	GCNGC	5 cut(s)	327, 486, 644, 720, 846
BlsI	GCNGC	5 cut(s)	328, 487, 645, 721, 847
Bme1390I	CCNGG	3 cut(s)	331, 662, 685
Bme18I	GGWCC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	1 cut(s)	599
BmrFI	CCNGG	3 cut(s)	331, 662, 685
BmrI	ACTGGG	2 cut(s)	429, 827
BmsI	GCATC	4 cut(s)	319, 460, 472, 868
BmuI	ACTGGG	2 cut(s)	429, 827
BplI	GAGNNNNNCTC	2 cut(s)	399, 431
Bpu10I	CCTNAGC	1 cut(s)	270
Bpu14I	TTCGAA	1 cut(s)	835
BpuEI	CTTGAG	1 cut(s)	74
BsaBI	GATNNNNATC	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	237
BsaJI	CCNNGG	2 cut(s)	574, 684
BsaWI	WCCGGW	1 cut(s)	228
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	5 cut(s)	23, 374, 435, 601, 822
Bse3DI	GCAATG	1 cut(s)	753
Bse8I	GATNNNNATC	1 cut(s)	42
BseBI	CCWGG	3 cut(s)	331, 662, 685
BseDI	CCNNGG	2 cut(s)	574, 684
BseGI	GGATG	1 cut(s)	310
BseJI	GATNNNNATC	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	753
BseMII	CTCAG	2 cut(s)	261, 430
BseNI	ACTGG	5 cut(s)	23, 374, 435, 601, 822
BseSI	GKGCMC	1 cut(s)	430
BseXI	GCAGC	5 cut(s)	313, 472, 655, 731, 857
BsgI	GTGCAG	1 cut(s)	904
BshFI	GGCC	1 cut(s)	111
BshNI	GGYRCC	1 cut(s)	597
BsiHKAI	GWGCWC	2 cut(s)	244, 430
BsiSI	CCGG	2 cut(s)	229, 521
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmAI	GTCTC	3 cut(s)	237, 402, 443
BsmI	GAATGC	1 cut(s)	623
BsnI	GGCC	1 cut(s)	111
Bso31I	GGTCTC	1 cut(s)	237
Bsp119I	TTCGAA	1 cut(s)	835
Bsp1286I	GDGCHC	2 cut(s)	244, 430
Bsp1407I	TGTACA	1 cut(s)	610
Bsp143I	GATC	5 cut(s)	43, 82, 265, 889, 913
BspACI	CCGC	3 cut(s)	218, 782, 884
BspANI	GGCC	1 cut(s)	111
BspCNI	CTCAG	2 cut(s)	262, 429
BspLI	GGNNCC	1 cut(s)	599
BspMI	ACCTGC	1 cut(s)	315
BspPI	GGATC	2 cut(s)	38, 260
BspT104I	TTCGAA	1 cut(s)	835
BspT107I	GGYRCC	1 cut(s)	597
BspTI	CTTAAG	1 cut(s)	907
BspTNI	GGTCTC	1 cut(s)	237
BsrBI	CCGCTC	1 cut(s)	884
BsrDI	GCAATG	1 cut(s)	753
BsrGI	TGTACA	1 cut(s)	610
BsrI	ACTGG	5 cut(s)	23, 374, 435, 601, 822
BssECI	CCNNGG	2 cut(s)	574, 684
BssMI	GATC	5 cut(s)	43, 82, 265, 889, 913
BssT1I	CCWWGG	1 cut(s)	574
Bst2UI	CCWGG	3 cut(s)	331, 662, 685
Bst4CI	ACNGT	3 cut(s)	425, 827, 904
Bst6I	CTCTTC	1 cut(s)	832
BstAFI	CTTAAG	1 cut(s)	907
BstAUI	TGTACA	1 cut(s)	610
BstBI	TTCGAA	1 cut(s)	835
BstDEI	CTNAG	2 cut(s)	270, 416
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	5 cut(s)	46, 85, 268, 892, 916
BstMAI	GTCTC	3 cut(s)	237, 402, 443
BstMBI	GATC	5 cut(s)	43, 82, 265, 889, 913
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 790
BstNI	CCWGG	3 cut(s)	331, 662, 685
BstSCI	CCNGG	3 cut(s)	329, 660, 683
BstSLI	GKGCMC	1 cut(s)	430
BstV1I	GCAGC	5 cut(s)	313, 472, 655, 731, 857
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	111
BtsCI	GGATG	1 cut(s)	310
BtsI	GCAGTG	1 cut(s)	916
BtsIMutI	CAGTG	2 cut(s)	608, 916
BveI	ACCTGC	1 cut(s)	315
CaiI	CAGNNNCTG	2 cut(s)	423, 800
Cfr13I	GGNCC	1 cut(s)	304
Csp6I	GTAC	2 cut(s)	552, 611
CspCI	CAANNNNNGTGG	2 cut(s)	859, 894
CviAII	CATG	3 cut(s)	275, 769, 785
CviQI	GTAC	2 cut(s)	552, 611
DdeI	CTNAG	2 cut(s)	270, 416
DpnI	GATC	5 cut(s)	45, 84, 267, 891, 915
DpnII	GATC	5 cut(s)	43, 82, 265, 889, 913
Eam1104I	CTCTTC	1 cut(s)	832
EarI	CTCTTC	1 cut(s)	832
Ecl136II	GAGCTC	1 cut(s)	242
Eco130I	CCWWGG	1 cut(s)	574
Eco24I	GRGCYC	1 cut(s)	244
Eco31I	GGTCTC	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	304
Eco53kI	GAGCTC	1 cut(s)	242
Eco57I	CTGAAG	1 cut(s)	572
EcoICRI	GAGCTC	1 cut(s)	242
EcoRI	GAATTC	1 cut(s)	653
EcoRII	CCWGG	3 cut(s)	329, 660, 683
EcoT14I	CCWWGG	1 cut(s)	574
EcoT38I	GRGCYC	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	574
FaeI	CATG	3 cut(s)	278, 772, 788
FatI	CATG	3 cut(s)	274, 768, 784
Fnu4HI	GCNGC	5 cut(s)	327, 486, 644, 720, 846
FokI	GGATG	1 cut(s)	297
FriOI	GRGCYC	1 cut(s)	244
Fsp4HI	GCNGC	5 cut(s)	327, 486, 644, 720, 846
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	5 cut(s)	327, 486, 644, 720, 846
HaeIII	GGCC	1 cut(s)	111
HapII	CCGG	2 cut(s)	229, 521
Hin1II	CATG	3 cut(s)	278, 772, 788
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	776
HinfI	GANTC	4 cut(s)	32, 526, 712, 797
HpaII	CCGG	2 cut(s)	229, 521
Hpy166II	GTNNAC	3 cut(s)	16, 304, 428
Hpy188I	TCNGA	4 cut(s)	37, 419, 591, 929
Hpy188III	TCNNGA	4 cut(s)	50, 263, 269, 479
Hpy8I	GTNNAC	3 cut(s)	16, 304, 428
HpyAV	CCTTC	2 cut(s)	751, 842
HpyCH4III	ACNGT	3 cut(s)	425, 827, 904
HpyCH4IV	ACGT	1 cut(s)	678
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 790
HpyF3I	CTNAG	2 cut(s)	270, 416
HpySE526I	ACGT	1 cut(s)	678
Hsp92II	CATG	3 cut(s)	278, 772, 788
Kzo9I	GATC	5 cut(s)	43, 82, 265, 889, 913
LmnI	GCTCC	2 cut(s)	239, 881
Lsp1109I	GCAGC	5 cut(s)	313, 472, 655, 731, 857
LweI	GCATC	4 cut(s)	319, 460, 472, 868
MaeI	CTAG	1 cut(s)	50
MaeII	ACGT	1 cut(s)	678
MaeIII	GTNAC	4 cut(s)	193, 709, 821, 827
MalI	GATC	5 cut(s)	45, 84, 267, 891, 915
MbiI	CCGCTC	1 cut(s)	884
MboI	GATC	5 cut(s)	43, 82, 265, 889, 913
MboII	GAAGA	4 cut(s)	65, 77, 201, 849
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	2 cut(s)	244, 430
MluCI	AATT	6 cut(s)	246, 351, 512, 637, 653, 853
MlyI	GAGTC	2 cut(s)	706, 806
MnlI	CCTC	8 cut(s)	57, 81, 122, 214, 441, 483, 638, 658
MseI	TTAA	3 cut(s)	537, 560, 908
MslI	CAYNNNNRTG	2 cut(s)	480, 603
MspCI	CTTAAG	1 cut(s)	907
MspI	CCGG	2 cut(s)	229, 521
MspR9I	CCNGG	3 cut(s)	331, 662, 685
Mva1269I	GAATGC	1 cut(s)	623
MvaI	CCWGG	3 cut(s)	331, 662, 685
MwoI	GCNNNNNNNGC	2 cut(s)	248, 790
NdeII	GATC	5 cut(s)	43, 82, 265, 889, 913
NlaIII	CATG	3 cut(s)	278, 772, 788
NlaIV	GGNNCC	1 cut(s)	599
NmuCI	GTSAC	2 cut(s)	709, 827
NspV	TTCGAA	1 cut(s)	835
OliI	CACNNNNGTG	1 cut(s)	603
PctI	GAATGC	1 cut(s)	623
PfeI	GAWTC	2 cut(s)	32, 526
PkrI	GCNGC	5 cut(s)	328, 487, 645, 721, 847
PleI	GAGTC	2 cut(s)	706, 805
PpsI	GAGTC	2 cut(s)	706, 805
PshBI	ATTAAT	1 cut(s)	537
PsiI	TTATAA	1 cut(s)	852
Psp124BI	GAGCTC	1 cut(s)	244
Psp6I	CCWGG	3 cut(s)	329, 660, 683
PspGI	CCWGG	3 cut(s)	329, 660, 683
PspN4I	GGNNCC	1 cut(s)	599
PspPI	GGNCC	1 cut(s)	304
PstNI	CAGNNNCTG	2 cut(s)	423, 800
PsuI	RGATCY	1 cut(s)	82
RsaI	GTAC	2 cut(s)	553, 612
RsaNI	GTAC	2 cut(s)	552, 611
RseI	CAYNNNNRTG	2 cut(s)	480, 603
SacI	GAGCTC	1 cut(s)	244
SaqAI	TTAA	3 cut(s)	537, 560, 908
SatI	GCNGC	5 cut(s)	327, 486, 644, 720, 846
Sau3AI	GATC	5 cut(s)	43, 82, 265, 889, 913
Sau96I	GGNCC	1 cut(s)	304
SchI	GAGTC	2 cut(s)	706, 806
ScrFI	CCNGG	3 cut(s)	331, 662, 685
SduI	GDGCHC	2 cut(s)	244, 430
SfaNI	GCATC	4 cut(s)	319, 460, 472, 868
SfuI	TTCGAA	1 cut(s)	835
SinI	GGWCC	1 cut(s)	304
SmiMI	CAYNNNNRTG	2 cut(s)	480, 603
SmlI	CTYRAG	2 cut(s)	89, 907
SmoI	CTYRAG	2 cut(s)	89, 907
Sse9I	AATT	6 cut(s)	246, 351, 512, 637, 653, 853
SsiI	CCGC	3 cut(s)	218, 782, 884
SspMI	CTAG	1 cut(s)	50
SstI	GAGCTC	1 cut(s)	244
StyD4I	CCNGG	3 cut(s)	329, 660, 683
StyI	CCWWGG	1 cut(s)	574
TaaI	ACNGT	3 cut(s)	425, 827, 904
TaiI	ACGT	1 cut(s)	681
TaqI	TCGA	3 cut(s)	811, 835, 898
TasI	AATT	6 cut(s)	246, 351, 512, 637, 653, 853
TatI	WGTACW	1 cut(s)	610
TfiI	GAWTC	2 cut(s)	32, 526
Tru1I	TTAA	3 cut(s)	537, 560, 908
Tru9I	TTAA	3 cut(s)	537, 560, 908
TscAI	CASTG	2 cut(s)	608, 923
TseFI	GTSAC	2 cut(s)	709, 827
TseI	GCWGC	5 cut(s)	326, 485, 643, 719, 845
Tsp45I	GTSAC	2 cut(s)	709, 827
TspDTI	ATGAA	1 cut(s)	801
TspRI	CASTG	2 cut(s)	608, 923
Vha464I	CTTAAG	1 cut(s)	907
VneI	GTGCAC	1 cut(s)	426
VpaK11BI	GGWCC	1 cut(s)	304
VspI	ATTAAT	1 cut(s)	537
XapI	RAATTY	1 cut(s)	653
XbaI	TCTAGA	1 cut(s)	49
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.