Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001600

Physical Location & Seq

Genomic Coordinates Reverse (-)

66000891 .. 66002412

Gene Structure 1522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000020529

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGATAAAGAGGACAATGCTGCTGGTGATAATGAAGAGGCTTCACAGTATGCTCTCTCTGTGGATCTTGAGGATGACATGATGGAAGATGATAACGAAGAGGATGAAGAGGACAATGAGGATGATGAACAAGATGGGGAAGTGGAAGAGGACGACAATGAGGATGGGGAAGAGAGTACTCTCACTTTTAAAGATGGGGTTAATCCTTTGGATCTCGTGGAAGATGGTGCTCTTACTGACCAACTTTATCAGAAATTTGTGGGAATGGATTATGAGGCTCTAGCTGAGAAAAAGCGAAAAGAAGAATTAACCAAACTTGCCCGATGTAGAGGCAATCAAGAAAGCTGCATAATAAAGAAGGTCAGGCAGGATGATCTTTCTGGCGCAAGTATGGAGGAAATTATGGAGGCCATGAATTATGGTATGCAAAGGAGATCAAGGAAGCGTAAGAAAAAAGGGAGGCGGAAGGGATCAAGAAACAAGCTTACCCCTGAAATTACTCGAATGCTTGGTGATGCTACTTATCATTATGCTCTTGGCAGTTACGAAGAGGCCATACCCATCTTGTCTGAAGTTATTATGAAAGCACCACATTTGCCTGATGCATATCACACGCTGGGACTTGTCCATCACGCTCTTGGTAATGAAATGAAAGCCTTGAATTTCTACACAATTGCTGCACATTTAGCACCAAGAGATTCATCTCTATGGGAACTGCTTTTTGACTGGTTTAGGGTTGGAGATTACCAAAGAGCTGCCACATCATATGAACAAATAGTACAAACTTGTCCTGATGATGTTGAAGCACCTAAGACCGGGGCAAATATGTACAAACTATGTGGTCAGCTTGAGCGTTCTGTTCATATTATGAGGGAATACCTCGAAGGTCATCCAACTGAGCCTGATTTGAGCGTCATTGATCTTTTAGCTTCCATGCTTATGCAAAATAATGCACACAGTGACGCTCTTCATCATATTGAGCGTGCGCGGTTAGTATCTTGTTCTCAAAAAGAGCTGCCTTTGGAAATGAAAGTTAAAGAAGGAATCTGCCATGCTTACCTTGGAAATATGGAGAAAGCAGAAATGCTCTTTAATGTTCTTGAACAGAAAAGTGCAGATCATGCTGAGTTAATTACTGGGATTCTTTTTGCGCAGAAACAGAGGACATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPR_16 TPR_19 TPR_6 TPR_7 TPR_8

Protein Analysis

391

Amino Acids

44.37

Weight (kDa)

4.71

Isoelectric Point (pI)

44.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001600)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17680 AT1G17680 AT1G17680
fragaria_vesca	FvH4_2g25610 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g37900 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38030 FvH4_6g38050
malus_domestica	MD09G1155000.v1.1 MD17G1140900.v1.1 MD17G1141000.v1.1 MD17G1141100.v1.1
prunus_persica	Prupe.8G070000_v2.0.a1
pyrus_communis	pycom09g07370 pycom09g07380 pycom17g13410 pycom17g13440
rosa_chinensis	RchiOBHm_Chr2g0151071 RchiOBHm_Chr2g0151101 RchiOBHm_Chr6g0293861
rosa_laevigata	RLG00000011917 RLG00000020527 RLG00000020529
rosa_multiflora	Rmu_co8508109.1_g000001 Rmu_ssc0000470.1_g000002
rosa_roxburghii	Rroxscaffold_2G00096730 Rroxscaffold_7G00173850
rosa_rugosa	Rorug02G0424200 Rorug02G0424300 Rorug02G0424400 Rorug02G0424500 Rorug06G0238400
rosa_samantha	Rh2AG484900 Rh2BG497200 Rh2CG471000 Rh2DG508100 Rh6AG352000 Rh6BG358800 Rh6CG366100 Rh6CG366200 Rh6DG352800
rosa_wichuraiana	Rw2G039740 Rw6G030630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1152
AccII	CGCG	1 cut(s)	988
AciI	CCGC	2 cut(s)	463, 988
AclWI	GGATC	3 cut(s)	72, 219, 478
AcsI	RAATTY	2 cut(s)	254, 661
AcuI	CTGAAG	1 cut(s)	591
AdeI	CACNNNGTG	1 cut(s)	959
AfaI	GTAC	3 cut(s)	178, 780, 830
AfiI	CCNNNNNNNGG	1 cut(s)	815
AgsI	TTSAA	3 cut(s)	661, 803, 1103
AluBI	AGCT	7 cut(s)	284, 345, 484, 755, 847, 929, 1015
AluI	AGCT	7 cut(s)	284, 345, 484, 755, 847, 929, 1015
Alw21I	GWGCWC	1 cut(s)	232
AlwI	GGATC	3 cut(s)	72, 219, 478
AoxI	GGCC	2 cut(s)	408, 552
ApeKI	GCWGC	5 cut(s)	20, 345, 677, 755, 1015
ApoI	RAATTY	2 cut(s)	254, 661
AspLEI	GCGC	3 cut(s)	386, 988, 1153
AsuC2I	CCSGG	1 cut(s)	817
AsuHPI	GGTGA	2 cut(s)	38, 524
BarI	GAAGNNNNNNTAC	2 cut(s)	540, 572
BauI	CACGAG	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	232
BbvI	GCAGC	5 cut(s)	7, 332, 664, 742, 1002
BccI	CCATC	7 cut(s)	76, 128, 158, 188, 218, 569, 636
BcnI	CCSGG	1 cut(s)	817
BfaI	CTAG	1 cut(s)	281
BisI	GCNGC	5 cut(s)	21, 346, 678, 756, 1016
BlsI	GCNGC	5 cut(s)	22, 347, 679, 757, 1017
BmcAI	AGTACT	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	817
BmrFI	CCNGG	1 cut(s)	817
BmrI	ACTGGG	1 cut(s)	1146
BmsI	GCATC	2 cut(s)	505, 592
BmuI	ACTGGG	1 cut(s)	1146
BpuEI	CTTGAG	2 cut(s)	89, 869
BpuMI	CCSGG	1 cut(s)	817
BsaBI	GATNNNNATC	1 cut(s)	606
BsaJI	CCNNGG	2 cut(s)	816, 1060
Bsc4I	CCNNNNNNNGG	1 cut(s)	815
Bse1I	ACTGG	2 cut(s)	731, 1141
Bse8I	GATNNNNATC	1 cut(s)	606
BseDI	CCNNGG	2 cut(s)	816, 1060
BseGI	GGATG	6 cut(s)	79, 109, 127, 169, 376, 889
BseJI	GATNNNNATC	1 cut(s)	606
BseLI	CCNNNNNNNGG	1 cut(s)	815
BseMII	CTCAG	3 cut(s)	276, 888, 1116
BseNI	ACTGG	2 cut(s)	731, 1141
BseXI	GCAGC	5 cut(s)	7, 332, 664, 742, 1002
BseYI	CCCAGC	1 cut(s)	616
BsgI	GTGCAG	2 cut(s)	663, 1134
Bsh1236I	CGCG	1 cut(s)	988
BshFI	GGCC	2 cut(s)	410, 554
BsiHKAI	GWGCWC	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	816
BslFI	GGGAC	1 cut(s)	633
BslI	CCNNNNNNNGG	1 cut(s)	815
BsmFI	GGGAC	1 cut(s)	633
BsmI	GAATGC	1 cut(s)	510
BsnI	GGCC	2 cut(s)	410, 554
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp1407I	TGTACA	1 cut(s)	828
Bsp143I	GATC	7 cut(s)	64, 211, 373, 434, 470, 919, 1117
BspACI	CCGC	2 cut(s)	463, 988
BspANI	GGCC	2 cut(s)	410, 554
BspCNI	CTCAG	3 cut(s)	277, 889, 1117
BspFNI	CGCG	1 cut(s)	988
BspPI	GGATC	3 cut(s)	72, 219, 478
BspQI	GCTCTTC	1 cut(s)	972
BsrGI	TGTACA	1 cut(s)	828
BsrI	ACTGG	2 cut(s)	731, 1141
BssECI	CCNNGG	2 cut(s)	816, 1060
BssMI	GATC	7 cut(s)	64, 211, 373, 434, 470, 919, 1117
BssSI	CACGAG	1 cut(s)	215
BssT1I	CCWWGG	1 cut(s)	1060
Bst2BI	CACGAG	1 cut(s)	215
Bst4CI	ACNGT	2 cut(s)	48, 959
Bst6I	CTCTTC	7 cut(s)	30, 93, 102, 141, 165, 543, 972
BstAPI	GCANNNNNTGC	1 cut(s)	1121
BstAUI	TGTACA	1 cut(s)	828
BstC8I	GCNNGC	1 cut(s)	984
BstDEI	CTNAG	4 cut(s)	285, 810, 897, 1125
BstF5I	GGATG	6 cut(s)	79, 109, 127, 169, 376, 889
BstFNI	CGCG	1 cut(s)	988
BstHHI	GCGC	3 cut(s)	386, 988, 1153
BstKTI	GATC	7 cut(s)	67, 214, 376, 437, 473, 922, 1120
BstMBI	GATC	7 cut(s)	64, 211, 373, 434, 470, 919, 1117
BstMWI	GCNNNNNNNGC	2 cut(s)	686, 1121
BstSCI	CCNGG	1 cut(s)	815
BstUI	CGCG	1 cut(s)	988
BstV1I	GCAGC	5 cut(s)	7, 332, 664, 742, 1002
BstX2I	RGATCY	2 cut(s)	64, 211
BstYI	RGATCY	2 cut(s)	64, 211
BsuRI	GGCC	2 cut(s)	410, 554
BtsCI	GGATG	6 cut(s)	79, 109, 127, 169, 376, 889
BtsIMutI	CAGTG	1 cut(s)	964
Cac8I	GCNNGC	1 cut(s)	984
CfoI	GCGC	3 cut(s)	386, 988, 1153
CseI	GACGC	2 cut(s)	901, 971
Csp6I	GTAC	3 cut(s)	177, 779, 829
CspCI	CAANNNNNGTGG	2 cut(s)	820, 855
CviAII	CATG	5 cut(s)	79, 412, 934, 1052, 1121
CviQI	GTAC	3 cut(s)	177, 779, 829
DdeI	CTNAG	4 cut(s)	285, 810, 897, 1125
DpnI	GATC	7 cut(s)	66, 213, 375, 436, 472, 921, 1119
DpnII	GATC	7 cut(s)	64, 211, 373, 434, 470, 919, 1117
DraI	TTTAAA	1 cut(s)	190
DraIII	CACNNNGTG	1 cut(s)	959
Eam1104I	CTCTTC	7 cut(s)	30, 93, 102, 141, 165, 543, 972
EarI	CTCTTC	7 cut(s)	30, 93, 102, 141, 165, 543, 972
EciI	GGCGGA	1 cut(s)	478
Eco130I	CCWWGG	1 cut(s)	1060
Eco57I	CTGAAG	1 cut(s)	591
EcoT14I	CCWWGG	1 cut(s)	1060
EcoT22I	ATGCAT	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	1060
FaeI	CATG	5 cut(s)	82, 415, 937, 1055, 1124
FaqI	GGGAC	1 cut(s)	633
FatI	CATG	5 cut(s)	78, 411, 933, 1051, 1120
FauNDI	CATATG	1 cut(s)	766
Fnu4HI	GCNGC	5 cut(s)	21, 346, 678, 756, 1016
FokI	GGATG	6 cut(s)	86, 116, 134, 176, 383, 876
Fsp4HI	GCNGC	5 cut(s)	21, 346, 678, 756, 1016
FspBI	CTAG	1 cut(s)	281
FspI	TGCGCA	1 cut(s)	1152
GlaI	GCGC	3 cut(s)	385, 987, 1152
GluI	GCNGC	5 cut(s)	21, 346, 678, 756, 1016
GsaI	CCCAGC	1 cut(s)	620
HaeIII	GGCC	2 cut(s)	410, 554
HapII	CCGG	1 cut(s)	816
HgaI	GACGC	2 cut(s)	901, 971
HhaI	GCGC	3 cut(s)	386, 988, 1153
Hin1II	CATG	5 cut(s)	82, 415, 937, 1055, 1124
Hin6I	GCGC	3 cut(s)	384, 986, 1151
HinP1I	GCGC	3 cut(s)	384, 986, 1151
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	3 cut(s)	698, 1044, 1141
HpaII	CCGG	1 cut(s)	816
HphI	GGTGA	2 cut(s)	38, 524
Hpy188I	TCNGA	2 cut(s)	252, 571
Hpy188III	TCNNGA	5 cut(s)	68, 338, 474, 791, 1100
HpyAV	CCTTC	4 cut(s)	352, 460, 878, 1034
HpyCH4III	ACNGT	2 cut(s)	48, 959
HpyCH4V	TGCA	7 cut(s)	348, 427, 605, 680, 943, 953, 1115
HpyF10VI	GCNNNNNNNGC	2 cut(s)	686, 1121
HpyF3I	CTNAG	4 cut(s)	285, 810, 897, 1125
Hsp92II	CATG	5 cut(s)	82, 415, 937, 1055, 1124
HspAI	GCGC	3 cut(s)	384, 986, 1151
Kzo9I	GATC	7 cut(s)	64, 211, 373, 434, 470, 919, 1117
LguI	GCTCTTC	1 cut(s)	972
Lsp1109I	GCAGC	5 cut(s)	7, 332, 664, 742, 1002
LweI	GCATC	2 cut(s)	505, 592
MaeI	CTAG	1 cut(s)	281
MaeIII	GTNAC	2 cut(s)	542, 959
MalI	GATC	7 cut(s)	66, 213, 375, 436, 472, 921, 1119
MboI	GATC	7 cut(s)	64, 211, 373, 434, 470, 919, 1117
MfeI	CAATTG	1 cut(s)	672
MflI	RGATCY	2 cut(s)	64, 211
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	8 cut(s)	254, 305, 399, 415, 495, 661, 672, 1131
MmeI	TCCRAC	2 cut(s)	718, 917
Mph1103I	ATGCAT	1 cut(s)	607
MseI	TTAA	6 cut(s)	189, 201, 308, 1035, 1092, 1130
MslI	CAYNNNNRTG	2 cut(s)	706, 938
MspI	CCGG	1 cut(s)	816
MspR9I	CCNGG	1 cut(s)	817
MunI	CAATTG	1 cut(s)	672
Mva1269I	GAATGC	1 cut(s)	510
MvnI	CGCG	1 cut(s)	988
MwoI	GCNNNNNNNGC	2 cut(s)	686, 1121
NciI	CCSGG	1 cut(s)	817
NdeI	CATATG	1 cut(s)	766
NdeII	GATC	7 cut(s)	64, 211, 373, 434, 470, 919, 1117
NlaIII	CATG	5 cut(s)	82, 415, 937, 1055, 1124
NmuCI	GTSAC	1 cut(s)	959
NsbI	TGCGCA	1 cut(s)	1152
NsiI	ATGCAT	1 cut(s)	607
PciSI	GCTCTTC	1 cut(s)	972
PctI	GAATGC	1 cut(s)	510
PfeI	GAWTC	3 cut(s)	698, 1044, 1141
PkrI	GCNGC	5 cut(s)	22, 347, 679, 757, 1017
PspFI	CCCAGC	1 cut(s)	616
PsrI	GAACNNNNNNTAC	2 cut(s)	762, 794
PsuI	RGATCY	2 cut(s)	64, 211
RsaI	GTAC	3 cut(s)	178, 780, 830
RsaNI	GTAC	3 cut(s)	177, 779, 829
RseI	CAYNNNNRTG	2 cut(s)	706, 938
SapI	GCTCTTC	1 cut(s)	972
SaqAI	TTAA	6 cut(s)	189, 201, 308, 1035, 1092, 1130
SatI	GCNGC	5 cut(s)	21, 346, 678, 756, 1016
Sau3AI	GATC	7 cut(s)	64, 211, 373, 434, 470, 919, 1117
ScaI	AGTACT	1 cut(s)	178
ScrFI	CCNGG	1 cut(s)	817
SduI	GDGCHC	1 cut(s)	232
SfaNI	GCATC	2 cut(s)	505, 592
SmiMI	CAYNNNNRTG	2 cut(s)	706, 938
SmlI	CTYRAG	2 cut(s)	68, 848
SmoI	CTYRAG	2 cut(s)	68, 848
Sse9I	AATT	8 cut(s)	254, 305, 399, 415, 495, 661, 672, 1131
SsiI	CCGC	2 cut(s)	463, 988
SspMI	CTAG	1 cut(s)	281
StyD4I	CCNGG	1 cut(s)	815
StyI	CCWWGG	1 cut(s)	1060
TaaI	ACNGT	2 cut(s)	48, 959
TaqI	TCGA	2 cut(s)	502, 882
TasI	AATT	8 cut(s)	254, 305, 399, 415, 495, 661, 672, 1131
TatI	WGTACW	3 cut(s)	176, 778, 828
TfiI	GAWTC	3 cut(s)	698, 1044, 1141
Tru1I	TTAA	6 cut(s)	189, 201, 308, 1035, 1092, 1130
Tru9I	TTAA	6 cut(s)	189, 201, 308, 1035, 1092, 1130
TscAI	CASTG	1 cut(s)	964
TseFI	GTSAC	1 cut(s)	959
TseI	GCWGC	5 cut(s)	20, 345, 677, 755, 1015
Tsp45I	GTSAC	1 cut(s)	959
TspRI	CASTG	1 cut(s)	964
XapI	RAATTY	2 cut(s)	254, 661
XcmI	CCANNNNNNNNNTGG	2 cut(s)	635, 1058
XspI	CTAG	1 cut(s)	281
ZrmI	AGTACT	1 cut(s)	178
Zsp2I	ATGCAT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.