Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003278

Physical Location & Seq

Genomic Coordinates Reverse (-)

33380231 .. 33381977

Gene Structure 1747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g43081.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGGTACTACCAAAACGGGACCTTCAGCCGTGGGTACTACCAAAACGGGACATTGCACCGTGGGTACTACCAAAACGTCTTGTTTGTTTATAGATGACAGCAAACAGGTAAAGATAATCGAGGAGGAATTTGGATATGATGATGCCTTTAACTACCACACAGAGAAAGATTTCGATGCTGCTTTAACCAAAATGCTCGAGGCTGCTCTCAACCATGTCAACAAGCACGCAAAGGTCTCCCTTTGTGGCATGATATCTGGATACAATAAGGTTTGGACTGAGAGGGAGGGAGTGAGGAATCTGCTGAATCTGATCGGCAAACAAGTGACGATGCAAGGGTACATGGTGGATTCATACTTTGATCGTTTTGGAGATTTTGCAAAGGAGATGGAGAGTCATCTTAAGGAAGGCAAGATTGGTTCTAAGATCAAATCGTCCAGGGACTCGATAATTTCTTGGAGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

156

Amino Acids

17.29

Weight (kDa)

7.72

Isoelectric Point (pI)

32.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43081 FvH4_6g43100 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110
malus_domestica	MD09G1109600.v1.1 MD09G1109700.v1.1 MD09G1109800.v1.1
prunus_persica	Prupe.3G216700_v2.0.a1 Prupe.3G216700_v2.0.a1
pyrus_communis	pycom09g03220 pycom09g03230
rosa_chinensis	RchiOBHm_Chr2g0159121 RchiOBHm_Chr2g0159131
rosa_laevigata	RLG00000021139 RLG00000021140
rosa_multiflora	Rmu_co8162966.1_g000001 Rmu_co8366625.1_g000001 Rmu_sc0004528.1_g000013 Rmu_sc0013510.1_g000003 Rmu_sc0013510.1_g000004 Rmu_sc0015794.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090750 Rroxscaffold_2G00090760
rosa_rugosa	Rorug02G0474200 Rorug02G0474500 Rorug02G0474500
rosa_samantha	Rh2AG541000 Rh2AG541200 Rh2BG553900 Rh2BG554000 Rh2CG524000 Rh2DG563500
rosa_wichuraiana	Rw2G044760 Rw2G044770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	9
AfaI	GTAC	4 cut(s)	7, 37, 67, 341
AflII	CTTAAG	1 cut(s)	401
AjnI	CCWGG	1 cut(s)	437
AjuI	GAANNNNNNNTTGG	2 cut(s)	399, 431
AluBI	AGCT	1 cut(s)	464
AluI	AGCT	1 cut(s)	464
Alw26I	GTCTC	1 cut(s)	241
Ama87I	CYCGRG	1 cut(s)	197
ApeKI	GCWGC	2 cut(s)	179, 203
ApoI	RAATTY	1 cut(s)	128
Asp700I	GAANNNNTTC	1 cut(s)	170
AspS9I	GGNCC	1 cut(s)	20
AvaI	CYCGRG	1 cut(s)	197
AvaII	GGWCC	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	166, 190
BccI	CCATC	1 cut(s)	382
BceAI	ACGGC	1 cut(s)	14
BciT130I	CCWGG	1 cut(s)	439
BciVI	GTATCC	1 cut(s)	254
BcoDI	GTCTC	1 cut(s)	241
BfrI	CTTAAG	1 cut(s)	401
BfuI	GTATCC	1 cut(s)	254
BisI	GCNGC	2 cut(s)	180, 204
BlsI	GCNGC	2 cut(s)	181, 205
Bme1390I	CCNGG	1 cut(s)	439
Bme18I	GGWCC	1 cut(s)	20
BmeT110I	CYCGRG	1 cut(s)	197
BmgT120I	GGNCC	1 cut(s)	20
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	439
BmsI	GCATC	3 cut(s)	133, 166, 321
BsaI	GGTCTC	1 cut(s)	241
BsaJI	CCNNGG	3 cut(s)	30, 60, 438
Bse3DI	GCAATG	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	439
BseDI	CCNNGG	3 cut(s)	30, 60, 438
BseMI	GCAATG	1 cut(s)	52
BseMII	CTCAG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	137
BseXI	GCAGC	2 cut(s)	166, 190
BsiHKCI	CYCGRG	1 cut(s)	197
BslFI	GGGAC	3 cut(s)	33, 63, 455
BsmAI	GTCTC	1 cut(s)	241
BsmFI	GGGAC	3 cut(s)	33, 63, 455
Bso31I	GGTCTC	1 cut(s)	241
BsoBI	CYCGRG	1 cut(s)	197
Bsp143I	GATC	3 cut(s)	312, 361, 426
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	21
BspTI	CTTAAG	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	52
BssECI	CCNNGG	3 cut(s)	30, 60, 438
BssMI	GATC	3 cut(s)	312, 361, 426
Bst2UI	CCWGG	1 cut(s)	439
Bst4CI	ACNGT	1 cut(s)	61
BstAFI	CTTAAG	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	3 cut(s)	279, 423, 465
BstDSI	CCRYGG	2 cut(s)	30, 60
BstKTI	GATC	3 cut(s)	315, 364, 429
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	3 cut(s)	312, 361, 426
BstNI	CCWGG	1 cut(s)	439
BstSCI	CCNGG	1 cut(s)	437
BstV1I	GCAGC	2 cut(s)	166, 190
BsuI	GTATCC	1 cut(s)	254
BtgI	CCRYGG	2 cut(s)	30, 60
Cac8I	GCNNGC	1 cut(s)	228
Cfr13I	GGNCC	1 cut(s)	20
Csp6I	GTAC	4 cut(s)	6, 36, 66, 340
CviAII	CATG	3 cut(s)	215, 250, 343
CviJI	RGCY	3 cut(s)	29, 203, 464
CviKI_1	RGCY	3 cut(s)	29, 203, 464
CviQI	GTAC	4 cut(s)	6, 36, 66, 340
DdeI	CTNAG	3 cut(s)	279, 423, 465
DpnI	GATC	3 cut(s)	314, 363, 428
DpnII	GATC	3 cut(s)	312, 361, 426
Eco31I	GGTCTC	1 cut(s)	241
Eco32I	GATATC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	20
EcoRII	CCWGG	1 cut(s)	437
EcoRV	GATATC	1 cut(s)	255
FaeI	CATG	3 cut(s)	218, 253, 346
FaiI	YATR	6 cut(s)	92, 138, 216, 251, 344, 355
FaqI	GGGAC	3 cut(s)	33, 63, 455
FatI	CATG	3 cut(s)	214, 249, 342
Fnu4HI	GCNGC	2 cut(s)	180, 204
Fsp4HI	GCNGC	2 cut(s)	180, 204
GluI	GCNGC	2 cut(s)	180, 204
Hin1II	CATG	3 cut(s)	218, 253, 346
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	5 cut(s)	298, 307, 350, 394, 443
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	312
Hpy188III	TCNNGA	1 cut(s)	258
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	2 cut(s)	33, 401
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	3 cut(s)	57, 334, 380
HpyF3I	CTNAG	3 cut(s)	279, 423, 465
HpySE526I	ACGT	1 cut(s)	77
Hsp92II	CATG	3 cut(s)	218, 253, 346
Kzo9I	GATC	3 cut(s)	312, 361, 426
LpnPI	CCDG	4 cut(s)	92, 243, 424, 451
Lsp1109I	GCAGC	2 cut(s)	166, 190
LweI	GCATC	3 cut(s)	133, 166, 321
MaeII	ACGT	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	3 cut(s)	314, 363, 428
MboI	GATC	3 cut(s)	312, 361, 426
MluCI	AATT	2 cut(s)	128, 450
MlyI	GAGTC	2 cut(s)	403, 437
MnlI	CCTC	6 cut(s)	115, 118, 193, 276, 280, 288
MroXI	GAANNNNTTC	1 cut(s)	170
MseI	TTAA	3 cut(s)	150, 185, 402
MspCI	CTTAAG	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	439
MvaI	CCWGG	1 cut(s)	439
NdeII	GATC	3 cut(s)	312, 361, 426
NlaIII	CATG	3 cut(s)	218, 253, 346
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	1 cut(s)	325
PaeR7I	CTCGAG	1 cut(s)	197
PdmI	GAANNNNTTC	1 cut(s)	170
PfeI	GAWTC	3 cut(s)	298, 307, 350
PkrI	GCNGC	2 cut(s)	181, 205
PleI	GAGTC	2 cut(s)	402, 437
PpsI	GAGTC	2 cut(s)	402, 437
PpuMI	RGGWCCY	1 cut(s)	20
Psp5II	RGGWCCY	1 cut(s)	20
Psp6I	CCWGG	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	437
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	20
PspPPI	RGGWCCY	1 cut(s)	20
PspXI	VCTCGAGB	1 cut(s)	197
RsaI	GTAC	4 cut(s)	7, 37, 67, 341
RsaNI	GTAC	4 cut(s)	6, 36, 66, 340
SaqAI	TTAA	3 cut(s)	150, 185, 402
SatI	GCNGC	2 cut(s)	180, 204
Sau3AI	GATC	3 cut(s)	312, 361, 426
Sau96I	GGNCC	1 cut(s)	20
SchI	GAGTC	2 cut(s)	403, 437
ScrFI	CCNGG	1 cut(s)	439
SetI	ASST	6 cut(s)	25, 80, 111, 237, 273, 466
SfaNI	GCATC	3 cut(s)	133, 166, 321
Sfr274I	CTCGAG	1 cut(s)	197
SinI	GGWCC	1 cut(s)	20
SlaI	CTCGAG	1 cut(s)	197
SmlI	CTYRAG	2 cut(s)	197, 401
SmoI	CTYRAG	2 cut(s)	197, 401
Sse9I	AATT	2 cut(s)	128, 450
StyD4I	CCNGG	1 cut(s)	437
TaaI	ACNGT	1 cut(s)	61
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	4 cut(s)	120, 174, 198, 446
TasI	AATT	2 cut(s)	128, 450
TfiI	GAWTC	3 cut(s)	298, 307, 350
Tru1I	TTAA	3 cut(s)	150, 185, 402
Tru9I	TTAA	3 cut(s)	150, 185, 402
TseFI	GTSAC	1 cut(s)	325
TseI	GCWGC	2 cut(s)	179, 203
Tsp45I	GTSAC	1 cut(s)	325
TspDTI	ATGAA	1 cut(s)	342
Vha464I	CTTAAG	1 cut(s)	401
VpaK11BI	GGWCC	1 cut(s)	20
XapI	RAATTY	1 cut(s)	128
XhoI	CTCGAG	1 cut(s)	197
XmnI	GAANNNNTTC	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.