Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0015794.1

Orthogroup ID

OG0003278

Physical Location & Seq

Genomic Coordinates Reverse (-)

1841 .. 2699

Gene Structure 859 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0015794.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgagtgctacagtagtcgaaagcagagaatggtacttggctgcttatgctcctgaaggtattccaacttcagatcatctgaaaattcgctgcgtctcgctggcccttgatgcaatccctgaacaacatgtcgtccttgagacgcttttcgtgtccgttgaaccatacctgcgtggcagaatgaccggcctggaagaagggctatactttgcgcagttcaaccttaacgaggtagtttcagcatttggtgttggaagagtaattatgtcaaaggatagtgactatggtgaaggtgacatagtgatctgtccttccacatcttttgccgagtactgtgtggtatcatcccagaatttaagaaaggtggagccaaatgctgggattccattgcctgaatatctcggtttgttagggatacctgggttggcagcgtgggtgggaatagaggtgatcgcggagccaataaaagcagggtcgaatgtgttcatatcagctgcggccagtgccgttgggatttatgcagggcagttggccaagcttaaaggctgtcgagtagttggaagcactggaactgacgacaaggtaagaaattcgttgagtacgtattattgcgattgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

206

Amino Acids

22.05

Weight (kDa)

4.78

Isoelectric Point (pI)

25.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43081 FvH4_6g43100 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110
malus_domestica	MD09G1109600.v1.1 MD09G1109700.v1.1 MD09G1109800.v1.1
prunus_persica	Prupe.3G216700_v2.0.a1 Prupe.3G216700_v2.0.a1
pyrus_communis	pycom09g03220 pycom09g03230
rosa_chinensis	RchiOBHm_Chr2g0159121 RchiOBHm_Chr2g0159131
rosa_laevigata	RLG00000021139 RLG00000021140
rosa_multiflora	Rmu_co8162966.1_g000001 Rmu_co8366625.1_g000001 Rmu_sc0004528.1_g000013 Rmu_sc0013510.1_g000003 Rmu_sc0013510.1_g000004 Rmu_sc0015794.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090750 Rroxscaffold_2G00090760
rosa_rugosa	Rorug02G0474200 Rorug02G0474500 Rorug02G0474500
rosa_samantha	Rh2AG541000 Rh2AG541200 Rh2BG553900 Rh2BG554000 Rh2CG524000 Rh2DG563500
rosa_wichuraiana	Rw2G044760 Rw2G044770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	213
Acc36I	ACCTGC	1 cut(s)	177
AccB7I	CCANNNNNTGG	1 cut(s)	377
AccII	CGCG	1 cut(s)	455
AciI	CCGC	2 cut(s)	455, 497
AcoI	YGGCCR	2 cut(s)	498, 531
AcsI	RAATTY	3 cut(s)	84, 352, 589
AcuI	CTGAAG	2 cut(s)	54, 75
AfaI	GTAC	3 cut(s)	35, 332, 601
AfiI	CCNNNNNNNGG	2 cut(s)	229, 377
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	2 cut(s)	161, 220
AjnI	CCWGG	2 cut(s)	189, 418
AluBI	AGCT	2 cut(s)	494, 538
AluI	AGCT	2 cut(s)	494, 538
Alw26I	GTCTC	2 cut(s)	100, 134
AoxI	GGCC	4 cut(s)	102, 187, 498, 531
ApeKI	GCWGC	4 cut(s)	41, 90, 428, 494
ApoI	RAATTY	3 cut(s)	84, 352, 589
Asp700I	GAANNNNTTC	2 cut(s)	60, 482
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	1 cut(s)	103
AsuHPI	GGTGA	3 cut(s)	299, 305, 460
BaeI	ACNNNNGTAYC	2 cut(s)	407, 440
BalI	TGGCCA	1 cut(s)	533
BarI	GAAGNNNNNNTAC	2 cut(s)	52, 84
BbvI	GCAGC	4 cut(s)	28, 77, 440, 481
BceAI	ACGGC	1 cut(s)	491
BciT130I	CCWGG	2 cut(s)	191, 420
BciVI	GTATCC	1 cut(s)	408
BcoDI	GTCTC	2 cut(s)	100, 134
BfmI	CTRYAG	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	177
BfuI	GTATCC	1 cut(s)	408
BisI	GCNGC	5 cut(s)	42, 91, 429, 495, 498
BlsI	GCNGC	5 cut(s)	43, 92, 430, 496, 499
BmcAI	AGTACT	1 cut(s)	332
Bme1390I	CCNGG	2 cut(s)	191, 420
BmgT120I	GGNCC	1 cut(s)	103
BmiI	GGNNCC	2 cut(s)	369, 459
BmrFI	CCNGG	2 cut(s)	191, 420
BmsI	GCATC	1 cut(s)	100
BpuEI	CTTGAG	1 cut(s)	158
BsaAI	YACGTR	1 cut(s)	603
BsaJI	CCNNGG	1 cut(s)	419
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 377
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	501, 571
Bse3DI	GCAATG	1 cut(s)	386
BseBI	CCWGG	2 cut(s)	191, 420
BseDI	CCNNGG	1 cut(s)	419
BseGI	GGATG	1 cut(s)	344
BseLI	CCNNNNNNNGG	2 cut(s)	229, 377
BseMI	GCAATG	1 cut(s)	386
BseNI	ACTGG	2 cut(s)	501, 571
BseXI	GCAGC	4 cut(s)	28, 77, 440, 481
BseYI	CCCAGC	1 cut(s)	377
Bsh1236I	CGCG	1 cut(s)	455
BshFI	GGCC	4 cut(s)	104, 189, 500, 533
BsiSI	CCGG	1 cut(s)	186
BslI	CCNNNNNNNGG	2 cut(s)	229, 377
BsmAI	GTCTC	2 cut(s)	100, 134
BsmBI	CGTCTC	2 cut(s)	100, 134
BsnI	GGCC	4 cut(s)	104, 189, 500, 533
Bsp143I	GATC	3 cut(s)	73, 303, 450
BspACI	CCGC	2 cut(s)	455, 497
BspANI	GGCC	4 cut(s)	104, 189, 500, 533
BspFNI	CGCG	1 cut(s)	455
BspLI	GGNNCC	2 cut(s)	369, 459
BspMI	ACCTGC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	386
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	501, 571
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	1 cut(s)	419
BssMI	GATC	3 cut(s)	73, 303, 450
Bst2UI	CCWGG	2 cut(s)	191, 420
Bst4CI	ACNGT	2 cut(s)	13, 335
Bst6I	CTCTTC	1 cut(s)	250
BstBAI	YACGTR	1 cut(s)	603
BstC8I	GCNNGC	1 cut(s)	102
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	344
BstFNI	CGCG	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	3 cut(s)	76, 306, 453
BstMAI	GTCTC	2 cut(s)	100, 134
BstMBI	GATC	3 cut(s)	73, 303, 450
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 110, 503
BstNI	CCWGG	2 cut(s)	191, 420
BstNSI	RCATGY	1 cut(s)	131
BstSCI	CCNGG	2 cut(s)	189, 418
BstSFI	CTRYAG	1 cut(s)	9
BstSNI	TACGTA	1 cut(s)	603
BstUI	CGCG	1 cut(s)	455
BstV1I	GCAGC	4 cut(s)	28, 77, 440, 481
BsuI	GTATCC	1 cut(s)	408
BsuRI	GGCC	4 cut(s)	104, 189, 500, 533
BtsCI	GGATG	1 cut(s)	344
BtsIMutI	CAGTG	2 cut(s)	508, 564
BveI	ACCTGC	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	102
CfoI	GCGC	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	103
CseI	GACGC	2 cut(s)	82, 151
Csp6I	GTAC	3 cut(s)	34, 331, 600
CspCI	CAANNNNNGTGG	2 cut(s)	304, 339
CviAII	CATG	1 cut(s)	128
CviQI	GTAC	3 cut(s)	34, 331, 600
DpnI	GATC	3 cut(s)	75, 305, 452
DpnII	GATC	3 cut(s)	73, 303, 450
EaeI	YGGCCR	2 cut(s)	498, 531
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Eco105I	TACGTA	1 cut(s)	603
Eco57I	CTGAAG	2 cut(s)	54, 75
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoRII	CCWGG	2 cut(s)	189, 418
Esp3I	CGTCTC	2 cut(s)	100, 134
FaeI	CATG	1 cut(s)	131
FaiI	YATR	9 cut(s)	48, 129, 166, 205, 266, 285, 299, 488, 519
FatI	CATG	1 cut(s)	127
Fnu4HI	GCNGC	5 cut(s)	42, 91, 429, 495, 498
FokI	GGATG	1 cut(s)	331
Fsp4HI	GCNGC	5 cut(s)	42, 91, 429, 495, 498
FspI	TGCGCA	1 cut(s)	213
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	5 cut(s)	42, 91, 429, 495, 498
GsaI	CCCAGC	1 cut(s)	381
HaeIII	GGCC	4 cut(s)	104, 189, 500, 533
HapII	CCGG	1 cut(s)	186
HgaI	GACGC	2 cut(s)	82, 151
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	1 cut(s)	382
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	3 cut(s)	299, 305, 460
Hpy188I	TCNGA	2 cut(s)	73, 81
Hpy188III	TCNNGA	1 cut(s)	53
HpyAV	CCTTC	4 cut(s)	50, 191, 284, 321
HpyCH4III	ACNGT	2 cut(s)	13, 335
HpyCH4IV	ACGT	1 cut(s)	602
HpyCH4V	TGCA	2 cut(s)	113, 521
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 110, 503
HpySE526I	ACGT	1 cut(s)	602
Hsp92II	CATG	1 cut(s)	131
HspAI	GCGC	1 cut(s)	212
Kzo9I	GATC	3 cut(s)	73, 303, 450
LmnI	GCTCC	3 cut(s)	55, 367, 457
Lsp1109I	GCAGC	4 cut(s)	28, 77, 440, 481
LweI	GCATC	1 cut(s)	100
MaeII	ACGT	1 cut(s)	602
MaeIII	GTNAC	2 cut(s)	278, 293
MalI	GATC	3 cut(s)	75, 305, 452
MboI	GATC	3 cut(s)	73, 303, 450
MboII	GAAGA	2 cut(s)	206, 267
MlsI	TGGCCA	1 cut(s)	533
MluCI	AATT	4 cut(s)	84, 261, 352, 589
MluNI	TGGCCA	1 cut(s)	533
MmeI	TCCRAC	3 cut(s)	89, 232, 538
MnlI	CCTC	2 cut(s)	223, 439
Mox20I	TGGCCA	1 cut(s)	533
MroXI	GAANNNNTTC	2 cut(s)	60, 482
MscI	TGGCCA	1 cut(s)	533
MseI	TTAA	3 cut(s)	225, 356, 540
Msp20I	TGGCCA	1 cut(s)	533
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	2 cut(s)	191, 420
MvaI	CCWGG	2 cut(s)	191, 420
MvnI	CGCG	1 cut(s)	455
MwoI	GCNNNNNNNGC	3 cut(s)	47, 110, 503
NdeII	GATC	3 cut(s)	73, 303, 450
NlaIII	CATG	1 cut(s)	131
NlaIV	GGNNCC	2 cut(s)	369, 459
NmeAIII	GCCGAG	1 cut(s)	352
NmuCI	GTSAC	2 cut(s)	278, 293
NsbI	TGCGCA	1 cut(s)	213
NspI	RCATGY	1 cut(s)	131
PciI	ACATGT	1 cut(s)	127
PcsI	WCGNNNNNNNCGW	1 cut(s)	599
PdmI	GAANNNNTTC	2 cut(s)	60, 482
PfeI	GAWTC	1 cut(s)	382
PflMI	CCANNNNNTGG	1 cut(s)	377
PkrI	GCNGC	5 cut(s)	43, 92, 430, 496, 499
Ppu21I	YACGTR	1 cut(s)	603
PscI	ACATGT	1 cut(s)	127
Psp6I	CCWGG	2 cut(s)	189, 418
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	2 cut(s)	189, 418
PspN4I	GGNNCC	2 cut(s)	369, 459
PspPI	GGNCC	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	3 cut(s)	35, 332, 601
RsaNI	GTAC	3 cut(s)	34, 331, 600
SaqAI	TTAA	3 cut(s)	225, 356, 540
SatI	GCNGC	5 cut(s)	42, 91, 429, 495, 498
Sau3AI	GATC	3 cut(s)	73, 303, 450
Sau96I	GGNCC	1 cut(s)	103
ScaI	AGTACT	1 cut(s)	332
ScrFI	CCNGG	2 cut(s)	191, 420
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
SnaBI	TACGTA	1 cut(s)	603
Sse9I	AATT	4 cut(s)	84, 261, 352, 589
SsiI	CCGC	2 cut(s)	455, 497
StyD4I	CCNGG	2 cut(s)	189, 418
TaaI	ACNGT	2 cut(s)	13, 335
TaiI	ACGT	1 cut(s)	605
TaqI	TCGA	3 cut(s)	18, 476, 550
TasI	AATT	4 cut(s)	84, 261, 352, 589
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	1 cut(s)	500
TfiI	GAWTC	1 cut(s)	382
Tru1I	TTAA	3 cut(s)	225, 356, 540
Tru9I	TTAA	3 cut(s)	225, 356, 540
TscAI	CASTG	2 cut(s)	508, 571
TseFI	GTSAC	2 cut(s)	278, 293
TseI	GCWGC	4 cut(s)	41, 90, 428, 494
Tsp45I	GTSAC	2 cut(s)	278, 293
TspDTI	ATGAA	1 cut(s)	475
TspGWI	ACGGA	1 cut(s)	145
TspRI	CASTG	2 cut(s)	508, 571
Van91I	CCANNNNNTGG	1 cut(s)	377
XagI	CCTNNNNNAGG	1 cut(s)	227
XapI	RAATTY	3 cut(s)	84, 352, 589
XceI	RCATGY	1 cut(s)	131
XmnI	GAANNNNTTC	2 cut(s)	60, 482
ZrmI	AGTACT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.