Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013510.1

Orthogroup ID

OG0003278

Physical Location & Seq

Genomic Coordinates Reverse (-)

15807 .. 25611

Gene Structure 9805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013510.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atgagtgctacagttgtcgaaagcagagaatggtacttggctgcttatgctcctgaaggtattccaacttcagatcatctgaaaattcgctgcgtctcgctggccattgatgcaatccctgaacaacatgtcgtccttgagacgcttttcgtgtccgttgaaccatacctgcgtggcagaatgaccggcctggaagaagggctatactttgcgcagttcaaccttaacgaggtagtttcagcatttggtgttggaagagtaattatgtcaaaggatagtgactatggtgaaggtgacatagtgatctgtccttccacatcttttgccgagtactgtgtggtatcatcccagaatttaagaaaggtggagccaaatgctgggattccattgcctgaatatctcggtttgttagggatacctgggttggcagcgtgggtgggaatagaggtgatcgcggagccaataaaagcagggtcgaatgtgttcatatcagctgcggccagtgccgttgggatttatgcagggcagttggccaagcttaaaggctgtcgagtagttggaagcactggaactgacgacaaggtaaagcttatcaaagaggaatttggatatgatgatgccttcaactaccacacagagaaagattacgatgctgctttaaccaggtatttcccaaatggaattgatatatatcttgacaatgttggtggtaaaatgctcgaggctgttctcaaccatgtcaacaagcatgcaaaggtctccctttgtggcatgatatctggctacaacaaggtatggactgagagggagggagtgaggaatctgctgaatctgatcggcaaacaagtgaagatgcaagggtacatggtgggttcatactttgatcgttttggagattttgaaaaggagatggagagccatctaaaggaaggcaagattgtttctaagatcaaaatcgtccatggagttgaaaatttcttggagagcttagggtcactgtttaccagctcaaatattgggaaaatagtaatccaagtcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

347

Amino Acids

38.03

Weight (kDa)

5.5

Isoelectric Point (pI)

22.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43081 FvH4_6g43100 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110
malus_domestica	MD09G1109600.v1.1 MD09G1109700.v1.1 MD09G1109800.v1.1
prunus_persica	Prupe.3G216700_v2.0.a1 Prupe.3G216700_v2.0.a1
pyrus_communis	pycom09g03220 pycom09g03230
rosa_chinensis	RchiOBHm_Chr2g0159121 RchiOBHm_Chr2g0159131
rosa_laevigata	RLG00000021139 RLG00000021140
rosa_multiflora	Rmu_co8162966.1_g000001 Rmu_co8366625.1_g000001 Rmu_sc0004528.1_g000013 Rmu_sc0013510.1_g000003 Rmu_sc0013510.1_g000004 Rmu_sc0015794.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090750 Rroxscaffold_2G00090760
rosa_rugosa	Rorug02G0474200 Rorug02G0474500 Rorug02G0474500
rosa_samantha	Rh2AG541000 Rh2AG541200 Rh2BG553900 Rh2BG554000 Rh2CG524000 Rh2DG563500
rosa_wichuraiana	Rw2G044760 Rw2G044770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	213
Acc36I	ACCTGC	1 cut(s)	177
AccB7I	CCANNNNNTGG	1 cut(s)	377
AccII	CGCG	1 cut(s)	455
AciI	CCGC	2 cut(s)	455, 497
AcoI	YGGCCR	3 cut(s)	102, 498, 531
AcsI	RAATTY	4 cut(s)	84, 352, 602, 973
AcuI	CTGAAG	2 cut(s)	54, 75
AfaI	GTAC	3 cut(s)	35, 332, 863
AfiI	CCNNNNNNNGG	3 cut(s)	229, 377, 925
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	5 cut(s)	161, 220, 625, 902, 971
AjnI	CCWGG	3 cut(s)	189, 418, 662
AluBI	AGCT	5 cut(s)	494, 538, 589, 987, 1008
AluI	AGCT	5 cut(s)	494, 538, 589, 987, 1008
Alw26I	GTCTC	3 cut(s)	100, 134, 763
Ama87I	CYCGRG	1 cut(s)	719
AoxI	GGCC	4 cut(s)	102, 187, 498, 531
ApeKI	GCWGC	5 cut(s)	41, 90, 428, 494, 653
ApoI	RAATTY	4 cut(s)	84, 352, 602, 973
Asp700I	GAANNNNTTC	2 cut(s)	60, 482
AspLEI	GCGC	1 cut(s)	214
AsuHPI	GGTGA	3 cut(s)	299, 305, 460
AvaI	CYCGRG	1 cut(s)	719
BaeI	ACNNNNGTAYC	2 cut(s)	407, 440
BalI	TGGCCA	2 cut(s)	104, 533
BarI	GAAGNNNNNNTAC	2 cut(s)	52, 84
BbvI	GCAGC	5 cut(s)	28, 77, 440, 481, 640
BccI	CCATC	2 cut(s)	904, 927
BceAI	ACGGC	1 cut(s)	491
BciT130I	CCWGG	3 cut(s)	191, 420, 664
BciVI	GTATCC	1 cut(s)	408
BcoDI	GTCTC	3 cut(s)	100, 134, 763
BfmI	CTRYAG	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	177
BfuI	GTATCC	1 cut(s)	408
BisI	GCNGC	6 cut(s)	42, 91, 429, 495, 498, 654
BlsI	GCNGC	6 cut(s)	43, 92, 430, 496, 499, 655
BmcAI	AGTACT	1 cut(s)	332
Bme1390I	CCNGG	3 cut(s)	191, 420, 664
BmeT110I	CYCGRG	1 cut(s)	719
BmiI	GGNNCC	2 cut(s)	369, 459
BmrFI	CCNGG	3 cut(s)	191, 420, 664
BmsI	GCATC	4 cut(s)	100, 607, 640, 843
Bpu10I	CCTNAGC	1 cut(s)	988
BpuEI	CTTGAG	1 cut(s)	158
BsaBI	GATNNNNATC	2 cut(s)	690, 953
BsaI	GGTCTC	1 cut(s)	763
BsaJI	CCNNGG	2 cut(s)	419, 961
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 377, 925
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	2 cut(s)	501, 571
Bse3DI	GCAATG	1 cut(s)	386
Bse8I	GATNNNNATC	2 cut(s)	690, 953
BseBI	CCWGG	3 cut(s)	191, 420, 664
BseDI	CCNNGG	2 cut(s)	419, 961
BseGI	GGATG	1 cut(s)	344
BseJI	GATNNNNATC	2 cut(s)	690, 953
BseLI	CCNNNNNNNGG	3 cut(s)	229, 377, 925
BseMI	GCAATG	1 cut(s)	386
BseMII	CTCAG	1 cut(s)	792
BseNI	ACTGG	2 cut(s)	501, 571
BseXI	GCAGC	5 cut(s)	28, 77, 440, 481, 640
BseYI	CCCAGC	1 cut(s)	377
Bsh1236I	CGCG	1 cut(s)	455
BshFI	GGCC	4 cut(s)	104, 189, 500, 533
BsiHKCI	CYCGRG	1 cut(s)	719
BsiSI	CCGG	1 cut(s)	186
BslI	CCNNNNNNNGG	3 cut(s)	229, 377, 925
BsmAI	GTCTC	3 cut(s)	100, 134, 763
BsmBI	CGTCTC	2 cut(s)	100, 134
BsnI	GGCC	4 cut(s)	104, 189, 500, 533
Bso31I	GGTCTC	1 cut(s)	763
BsoBI	CYCGRG	1 cut(s)	719
Bsp143I	GATC	6 cut(s)	73, 303, 450, 834, 883, 948
Bsp19I	CCATGG	1 cut(s)	961
BspACI	CCGC	2 cut(s)	455, 497
BspANI	GGCC	4 cut(s)	104, 189, 500, 533
BspCNI	CTCAG	1 cut(s)	793
BspFNI	CGCG	1 cut(s)	455
BspLI	GGNNCC	2 cut(s)	369, 459
BspMI	ACCTGC	1 cut(s)	177
BspTNI	GGTCTC	1 cut(s)	763
BsrDI	GCAATG	1 cut(s)	386
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	2 cut(s)	501, 571
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	2 cut(s)	419, 961
BssMI	GATC	6 cut(s)	73, 303, 450, 834, 883, 948
BssT1I	CCWWGG	1 cut(s)	961
Bst2UI	CCWGG	3 cut(s)	191, 420, 664
Bst4CI	ACNGT	3 cut(s)	13, 335, 999
Bst6I	CTCTTC	1 cut(s)	250
BstC8I	GCNNGC	2 cut(s)	102, 750
BstDEI	CTNAG	3 cut(s)	801, 945, 988
BstDSI	CCRYGG	1 cut(s)	961
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	344
BstFNI	CGCG	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	6 cut(s)	76, 306, 453, 837, 886, 951
BstMAI	GTCTC	3 cut(s)	100, 134, 763
BstMBI	GATC	6 cut(s)	73, 303, 450, 834, 883, 948
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 110, 503
BstNI	CCWGG	3 cut(s)	191, 420, 664
BstNSI	RCATGY	2 cut(s)	131, 752
BstSCI	CCNGG	3 cut(s)	189, 418, 662
BstSFI	CTRYAG	1 cut(s)	9
BstUI	CGCG	1 cut(s)	455
BstV1I	GCAGC	5 cut(s)	28, 77, 440, 481, 640
BsuI	GTATCC	1 cut(s)	408
BsuRI	GGCC	4 cut(s)	104, 189, 500, 533
BtgI	CCRYGG	1 cut(s)	961
BtsCI	GGATG	1 cut(s)	344
BtsIMutI	CAGTG	3 cut(s)	508, 564, 995
BveI	ACCTGC	1 cut(s)	177
Cac8I	GCNNGC	2 cut(s)	102, 750
CfoI	GCGC	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	185
CseI	GACGC	2 cut(s)	82, 151
CsiI	ACCWGGT	1 cut(s)	662
Csp6I	GTAC	3 cut(s)	34, 331, 862
CspCI	CAANNNNNGTGG	4 cut(s)	304, 339, 688, 723
CviAII	CATG	6 cut(s)	128, 737, 749, 772, 865, 962
CviQI	GTAC	3 cut(s)	34, 331, 862
DdeI	CTNAG	3 cut(s)	801, 945, 988
DpnI	GATC	6 cut(s)	75, 305, 452, 836, 885, 950
DpnII	GATC	6 cut(s)	73, 303, 450, 834, 883, 948
EaeI	YGGCCR	3 cut(s)	102, 498, 531
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	961
Eco31I	GGTCTC	1 cut(s)	763
Eco32I	GATATC	1 cut(s)	777
Eco57I	CTGAAG	2 cut(s)	54, 75
Eco88I	CYCGRG	1 cut(s)	719
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoRII	CCWGG	3 cut(s)	189, 418, 662
EcoRV	GATATC	1 cut(s)	777
EcoT14I	CCWWGG	1 cut(s)	961
ErhI	CCWWGG	1 cut(s)	961
Esp3I	CGTCTC	2 cut(s)	100, 134
FaeI	CATG	6 cut(s)	131, 740, 752, 775, 868, 965
FatI	CATG	6 cut(s)	127, 736, 748, 771, 864, 961
Fnu4HI	GCNGC	6 cut(s)	42, 91, 429, 495, 498, 654
FokI	GGATG	1 cut(s)	331
Fsp4HI	GCNGC	6 cut(s)	42, 91, 429, 495, 498, 654
FspI	TGCGCA	1 cut(s)	213
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	6 cut(s)	42, 91, 429, 495, 498, 654
GsaI	CCCAGC	1 cut(s)	381
HaeIII	GGCC	4 cut(s)	104, 189, 500, 533
HapII	CCGG	1 cut(s)	186
HgaI	GACGC	2 cut(s)	82, 151
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	6 cut(s)	131, 740, 752, 775, 868, 965
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HincII	GTYRAC	1 cut(s)	742
HindII	GTYRAC	1 cut(s)	742
HindIII	AAGCTT	2 cut(s)	536, 587
HinfI	GANTC	3 cut(s)	382, 820, 829
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	3 cut(s)	299, 305, 460
Hpy166II	GTNNAC	2 cut(s)	742, 1002
Hpy188I	TCNGA	3 cut(s)	73, 81, 834
Hpy188III	TCNNGA	2 cut(s)	53, 695
Hpy8I	GTNNAC	2 cut(s)	742, 1002
HpyAV	CCTTC	6 cut(s)	50, 191, 284, 321, 631, 923
HpyCH4III	ACNGT	3 cut(s)	13, 335, 999
HpyCH4V	TGCA	4 cut(s)	113, 521, 752, 856
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 110, 503
HpyF3I	CTNAG	3 cut(s)	801, 945, 988
Hsp92II	CATG	6 cut(s)	131, 740, 752, 775, 868, 965
HspAI	GCGC	1 cut(s)	212
Kzo9I	GATC	6 cut(s)	73, 303, 450, 834, 883, 948
LmnI	GCTCC	3 cut(s)	55, 367, 457
Lsp1109I	GCAGC	5 cut(s)	28, 77, 440, 481, 640
LweI	GCATC	4 cut(s)	100, 607, 640, 843
MabI	ACCWGGT	1 cut(s)	662
MaeIII	GTNAC	3 cut(s)	278, 293, 993
MalI	GATC	6 cut(s)	75, 305, 452, 836, 885, 950
MboI	GATC	6 cut(s)	73, 303, 450, 834, 883, 948
MboII	GAAGA	3 cut(s)	206, 267, 862
MlsI	TGGCCA	2 cut(s)	104, 533
MluCI	AATT	6 cut(s)	84, 261, 352, 602, 681, 973
MluNI	TGGCCA	2 cut(s)	104, 533
MmeI	TCCRAC	3 cut(s)	89, 232, 538
MnlI	CCTC	7 cut(s)	223, 439, 592, 715, 798, 802, 810
Mox20I	TGGCCA	2 cut(s)	104, 533
MroXI	GAANNNNTTC	2 cut(s)	60, 482
MscI	TGGCCA	2 cut(s)	104, 533
MseI	TTAA	4 cut(s)	225, 356, 540, 659
Msp20I	TGGCCA	2 cut(s)	104, 533
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	3 cut(s)	191, 420, 664
MvaI	CCWGG	3 cut(s)	191, 420, 664
MvnI	CGCG	1 cut(s)	455
MwoI	GCNNNNNNNGC	3 cut(s)	47, 110, 503
NcoI	CCATGG	1 cut(s)	961
NdeII	GATC	6 cut(s)	73, 303, 450, 834, 883, 948
NlaIII	CATG	6 cut(s)	131, 740, 752, 775, 868, 965
NlaIV	GGNNCC	2 cut(s)	369, 459
NmeAIII	GCCGAG	1 cut(s)	352
NmuCI	GTSAC	3 cut(s)	278, 293, 993
NsbI	TGCGCA	1 cut(s)	213
NspI	RCATGY	2 cut(s)	131, 752
PaeI	GCATGC	1 cut(s)	752
PaeR7I	CTCGAG	1 cut(s)	719
PciI	ACATGT	1 cut(s)	127
PdmI	GAANNNNTTC	2 cut(s)	60, 482
PfeI	GAWTC	3 cut(s)	382, 820, 829
PflMI	CCANNNNNTGG	1 cut(s)	377
PkrI	GCNGC	6 cut(s)	43, 92, 430, 496, 499, 655
PscI	ACATGT	1 cut(s)	127
Psp6I	CCWGG	3 cut(s)	189, 418, 662
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	3 cut(s)	189, 418, 662
PspN4I	GGNNCC	2 cut(s)	369, 459
PspXI	VCTCGAGB	1 cut(s)	719
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	3 cut(s)	35, 332, 863
RsaNI	GTAC	3 cut(s)	34, 331, 862
SaqAI	TTAA	4 cut(s)	225, 356, 540, 659
SatI	GCNGC	6 cut(s)	42, 91, 429, 495, 498, 654
Sau3AI	GATC	6 cut(s)	73, 303, 450, 834, 883, 948
ScaI	AGTACT	1 cut(s)	332
ScrFI	CCNGG	3 cut(s)	191, 420, 664
SexAI	ACCWGGT	1 cut(s)	662
SfaNI	GCATC	4 cut(s)	100, 607, 640, 843
SfcI	CTRYAG	1 cut(s)	9
Sfr274I	CTCGAG	1 cut(s)	719
SlaI	CTCGAG	1 cut(s)	719
SmlI	CTYRAG	2 cut(s)	137, 719
SmoI	CTYRAG	2 cut(s)	137, 719
SphI	GCATGC	1 cut(s)	752
Sse9I	AATT	6 cut(s)	84, 261, 352, 602, 681, 973
SsiI	CCGC	2 cut(s)	455, 497
SspI	AATATT	1 cut(s)	1015
StyD4I	CCNGG	3 cut(s)	189, 418, 662
StyI	CCWWGG	1 cut(s)	961
TaaI	ACNGT	3 cut(s)	13, 335, 999
TaqI	TCGA	4 cut(s)	18, 476, 550, 720
TasI	AATT	6 cut(s)	84, 261, 352, 602, 681, 973
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	1 cut(s)	500
TfiI	GAWTC	3 cut(s)	382, 820, 829
Tru1I	TTAA	4 cut(s)	225, 356, 540, 659
Tru9I	TTAA	4 cut(s)	225, 356, 540, 659
TscAI	CASTG	3 cut(s)	508, 571, 1002
TseFI	GTSAC	3 cut(s)	278, 293, 993
TseI	GCWGC	5 cut(s)	41, 90, 428, 494, 653
Tsp45I	GTSAC	3 cut(s)	278, 293, 993
TspDTI	ATGAA	2 cut(s)	475, 864
TspGWI	ACGGA	1 cut(s)	145
TspRI	CASTG	3 cut(s)	508, 571, 1002
Van91I	CCANNNNNTGG	1 cut(s)	377
XagI	CCTNNNNNAGG	1 cut(s)	227
XapI	RAATTY	4 cut(s)	84, 352, 602, 973
XceI	RCATGY	2 cut(s)	131, 752
XhoI	CTCGAG	1 cut(s)	719
XmnI	GAANNNNTTC	2 cut(s)	60, 482
ZrmI	AGTACT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.