Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003278

Physical Location & Seq

Genomic Coordinates Forward (+)

2387514 .. 2401585

Gene Structure 14072 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g03220.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCAGCTGAAGGTGTTCCAACTTCTGATCGATCTCAAACTCCGTACGGTCACACTCTCACTATCCCCTGATTCCATTCCCGAACAACATGTCATTCTTGAGATCCTCTTCATTTCCGTCGAGCCATATTTACGCGGCAGAATTACTGGCCGGGAAGATGGGCTATACAGCCCCCAGTTCAACCTTGACGAGGTAATTGCAGGATTTGGGGTTGGAAGGGTAATTCGGTCAAAAGATAGTAATTATGTTGAAGGTGACATAGTCGTCAGTGCATTCACATCTTTTGCTGAATATTGTGTGGTACCATCCCAGTTCGTAGCAAGAAGGATCGATCCAAATAGTGGGATTCCCTTGCCTGAATATATCAGTTCGATAGGGGTGCCGGGGTTTGCAGCATGGGTGGGAATTGAGTTGCTGGCAGACCCAAAACCAGGATCCAATGTGTTCATTTCAGCTGCTGCAGGGGCTGTTGGAATGTGTGCTGGACAGTTGGCCAAGCTCAGAGGATGCAGGGTCATCGGAAGCACCGGATCAGATGAGAAGGTGAGGCTAATCAAGGAGGAATTTGGATATGATGATGCTTTTAACTACCACACAGAGACAAATTTTGATGCTGCTTTAAGCAAGTATTTCCCTAATGGAATCGATGTCTACCTTGACAATGTTGGCGGTGAAATGCTTGAGGCTGCTCTCAACCATGTCAACAAGCATGCCAAGGTCCCTCTTTGTGGCATGATATCTGGCTACAATAAGGTTTGGACTGAGAGAGAGGGGGTGAGGAATCTGTTGAATTTAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

267

Amino Acids

29.09

Weight (kDa)

5.19

Isoelectric Point (pI)

28.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43081 FvH4_6g43100 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110
malus_domestica	MD09G1109600.v1.1 MD09G1109700.v1.1 MD09G1109800.v1.1
prunus_persica	Prupe.3G216700_v2.0.a1 Prupe.3G216700_v2.0.a1
pyrus_communis	pycom09g03220 pycom09g03230
rosa_chinensis	RchiOBHm_Chr2g0159121 RchiOBHm_Chr2g0159131
rosa_laevigata	RLG00000021139 RLG00000021140
rosa_multiflora	Rmu_co8162966.1_g000001 Rmu_co8366625.1_g000001 Rmu_sc0004528.1_g000013 Rmu_sc0013510.1_g000003 Rmu_sc0013510.1_g000004 Rmu_sc0015794.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090750 Rroxscaffold_2G00090760
rosa_rugosa	Rorug02G0474200 Rorug02G0474500 Rorug02G0474500
rosa_samantha	Rh2AG541000 Rh2AG541200 Rh2BG553900 Rh2BG554000 Rh2CG524000 Rh2DG563500
rosa_wichuraiana	Rw2G044760 Rw2G044770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
Acc65I	GGTACC	1 cut(s)	301
AccB1I	GGYRCC	2 cut(s)	301, 379
AccB7I	CCANNNNNTGG	1 cut(s)	341
AccI	GTMKAC	1 cut(s)	651
AccII	CGCG	1 cut(s)	135
AciI	CCGC	2 cut(s)	135, 669
AclWI	GGATC	6 cut(s)	97, 326, 335, 429, 442, 538
AcoI	YGGCCR	2 cut(s)	148, 492
AcsI	RAATTY	3 cut(s)	563, 604, 790
AcuI	CTGAAG	1 cut(s)	29
AfaI	GTAC	2 cut(s)	46, 303
AfiI	CCNNNNNNNGG	4 cut(s)	190, 341, 431, 728
AflIII	ACRYGT	1 cut(s)	88
AgsI	TTSAA	3 cut(s)	181, 251, 790
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	3 cut(s)	7, 455, 499
AluI	AGCT	3 cut(s)	7, 455, 499
Alw26I	GTCTC	1 cut(s)	593
AlwI	GGATC	6 cut(s)	97, 326, 335, 429, 442, 538
AlwNI	CAGNNNCTG	2 cut(s)	458, 467
AoxI	GGCC	2 cut(s)	148, 492
ApeKI	GCWGC	6 cut(s)	4, 392, 455, 458, 614, 686
ApoI	RAATTY	3 cut(s)	563, 604, 790
ArsI	GACNNNNNNTTYG	2 cut(s)	75, 107
Asp700I	GAANNNNTTC	1 cut(s)	14
Asp718I	GGTACC	1 cut(s)	301
AspS9I	GGNCC	1 cut(s)	718
AsuC2I	CCSGG	2 cut(s)	152, 384
AsuHPI	GGTGA	4 cut(s)	266, 556, 683, 787
AvaII	GGWCC	1 cut(s)	718
BalI	TGGCCA	1 cut(s)	494
BamHI	GGATCC	1 cut(s)	434
BanI	GGYRCC	2 cut(s)	301, 379
BbvI	GCAGC	6 cut(s)	16, 404, 442, 445, 601, 673
BccI	CCATC	2 cut(s)	152, 313
BcgI	CGANNNNNNTGC	6 cut(s)	179, 213, 361, 395, 499, 533
BciT130I	CCWGG	1 cut(s)	432
BcnI	CCSGG	2 cut(s)	152, 384
BcoDI	GTCTC	1 cut(s)	593
BfmI	CTRYAG	1 cut(s)	459
BisI	GCNGC	7 cut(s)	5, 136, 393, 456, 459, 615, 687
BlsI	GCNGC	7 cut(s)	6, 137, 394, 457, 460, 616, 688
Bme1390I	CCNGG	3 cut(s)	152, 384, 432
Bme18I	GGWCC	1 cut(s)	718
BmgT120I	GGNCC	1 cut(s)	718
BmiI	GGNNCC	4 cut(s)	303, 381, 436, 720
BmrFI	CCNGG	3 cut(s)	152, 384, 432
BmrI	ACTGGG	2 cut(s)	169, 304
BmsI	GCATC	3 cut(s)	497, 568, 601
BmuI	ACTGGG	2 cut(s)	169, 304
BpuEI	CTTGAG	2 cut(s)	119, 701
BpuMI	CCSGG	2 cut(s)	152, 384
Bsa29I	ATCGAT	3 cut(s)	30, 330, 645
BsaJI	CCNNGG	2 cut(s)	383, 714
BsaWI	WCCGGW	1 cut(s)	527
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 341, 431, 728
Bse1I	ACTGG	3 cut(s)	151, 175, 310
BseBI	CCWGG	1 cut(s)	432
BseCI	ATCGAT	3 cut(s)	30, 330, 645
BseDI	CCNNGG	2 cut(s)	383, 714
BseGI	GGATG	2 cut(s)	305, 512
BseLI	CCNNNNNNNGG	4 cut(s)	190, 341, 431, 728
BseMII	CTCAG	2 cut(s)	514, 753
BseNI	ACTGG	3 cut(s)	151, 175, 310
BseXI	GCAGC	6 cut(s)	16, 404, 442, 445, 601, 673
Bsh1236I	CGCG	1 cut(s)	135
BshFI	GGCC	2 cut(s)	150, 494
BshNI	GGYRCC	2 cut(s)	301, 379
BshVI	ATCGAT	3 cut(s)	30, 330, 645
BsiSI	CCGG	3 cut(s)	151, 383, 528
BsiWI	CGTACG	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	704
BslI	CCNNNNNNNGG	4 cut(s)	190, 341, 431, 728
BsmAI	GTCTC	1 cut(s)	593
BsmFI	GGGAC	1 cut(s)	704
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	2 cut(s)	150, 494
Bsp143I	GATC	7 cut(s)	27, 31, 102, 327, 331, 434, 530
BspACI	CCGC	2 cut(s)	135, 669
BspANI	GGCC	2 cut(s)	150, 494
BspCNI	CTCAG	2 cut(s)	513, 754
BspDI	ATCGAT	3 cut(s)	30, 330, 645
BspFNI	CGCG	1 cut(s)	135
BspLI	GGNNCC	4 cut(s)	303, 381, 436, 720
BspMAI	CTGCAG	1 cut(s)	463
BspPI	GGATC	6 cut(s)	97, 326, 335, 429, 442, 538
BspT107I	GGYRCC	2 cut(s)	301, 379
BsrI	ACTGG	3 cut(s)	151, 175, 310
BssECI	CCNNGG	2 cut(s)	383, 714
BssMI	GATC	7 cut(s)	27, 31, 102, 327, 331, 434, 530
BssT1I	CCWWGG	1 cut(s)	714
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	2 cut(s)	49, 489
Bst6I	CTCTTC	1 cut(s)	113
BstC8I	GCNNGC	2 cut(s)	417, 711
BstDEI	CTNAG	2 cut(s)	500, 762
BstENI	CCTNNNNNAGG	1 cut(s)	188
BstF5I	GGATG	2 cut(s)	305, 512
BstFNI	CGCG	1 cut(s)	135
BstKTI	GATC	7 cut(s)	30, 34, 105, 330, 334, 437, 533
BstMAI	GTCTC	1 cut(s)	593
BstMBI	GATC	7 cut(s)	27, 31, 102, 327, 331, 434, 530
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstNI	CCWGG	1 cut(s)	432
BstNSI	RCATGY	2 cut(s)	92, 713
BstSCI	CCNGG	3 cut(s)	150, 382, 430
BstSFI	CTRYAG	1 cut(s)	459
BstUI	CGCG	1 cut(s)	135
BstV1I	GCAGC	6 cut(s)	16, 404, 442, 445, 601, 673
BstX2I	RGATCY	2 cut(s)	102, 434
BstYI	RGATCY	2 cut(s)	102, 434
Bsu15I	ATCGAT	3 cut(s)	30, 330, 645
BsuRI	GGCC	2 cut(s)	150, 494
BsuTUI	ATCGAT	3 cut(s)	30, 330, 645
BtsCI	GGATG	2 cut(s)	305, 512
BtsIMutI	CAGTG	1 cut(s)	274
Cac8I	GCNNGC	2 cut(s)	417, 711
CaiI	CAGNNNCTG	2 cut(s)	458, 467
Cfr13I	GGNCC	1 cut(s)	718
ClaI	ATCGAT	3 cut(s)	30, 330, 645
Csp6I	GTAC	2 cut(s)	45, 302
CviAII	CATG	5 cut(s)	89, 396, 698, 710, 733
CviQI	GTAC	2 cut(s)	45, 302
DdeI	CTNAG	2 cut(s)	500, 762
DpnI	GATC	7 cut(s)	29, 33, 104, 329, 333, 436, 532
DpnII	GATC	7 cut(s)	27, 31, 102, 327, 331, 434, 530
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
EaeI	YGGCCR	2 cut(s)	148, 492
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco130I	CCWWGG	1 cut(s)	714
Eco32I	GATATC	1 cut(s)	738
Eco47I	GGWCC	1 cut(s)	718
Eco57I	CTGAAG	1 cut(s)	29
EcoNI	CCTNNNNNAGG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	718
EcoRII	CCWGG	1 cut(s)	430
EcoRV	GATATC	1 cut(s)	738
EcoT14I	CCWWGG	1 cut(s)	714
ErhI	CCWWGG	1 cut(s)	714
FaeI	CATG	5 cut(s)	92, 399, 701, 713, 736
FaqI	GGGAC	1 cut(s)	704
FatI	CATG	5 cut(s)	88, 395, 697, 709, 732
FblI	GTMKAC	1 cut(s)	651
Fnu4HI	GCNGC	7 cut(s)	5, 136, 393, 456, 459, 615, 687
FokI	GGATG	2 cut(s)	292, 519
Fsp4HI	GCNGC	7 cut(s)	5, 136, 393, 456, 459, 615, 687
GluI	GCNGC	7 cut(s)	5, 136, 393, 456, 459, 615, 687
HaeIII	GGCC	2 cut(s)	150, 494
HapII	CCGG	3 cut(s)	151, 383, 528
Hin1II	CATG	5 cut(s)	92, 399, 701, 713, 736
HincII	GTYRAC	1 cut(s)	703
HindII	GTYRAC	1 cut(s)	703
HinfI	GANTC	4 cut(s)	71, 346, 642, 781
HpaII	CCGG	3 cut(s)	151, 383, 528
HphI	GGTGA	4 cut(s)	266, 556, 683, 787
Hpy166II	GTNNAC	2 cut(s)	652, 703
Hpy188I	TCNGA	5 cut(s)	27, 503, 521, 535, 800
Hpy188III	TCNNGA	2 cut(s)	80, 98
Hpy8I	GTNNAC	2 cut(s)	652, 703
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	5 cut(s)	4, 210, 245, 318, 535
HpyCH4III	ACNGT	2 cut(s)	49, 489
HpyCH4V	TGCA	6 cut(s)	4, 200, 272, 392, 461, 510
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	2 cut(s)	500, 762
Hsp92II	CATG	5 cut(s)	92, 399, 701, 713, 736
KpnI	GGTACC	1 cut(s)	305
Kzo9I	GATC	7 cut(s)	27, 31, 102, 327, 331, 434, 530
Lsp1109I	GCAGC	6 cut(s)	16, 404, 442, 445, 601, 673
LweI	GCATC	3 cut(s)	497, 568, 601
MaeIII	GTNAC	2 cut(s)	49, 254
MalI	GATC	7 cut(s)	29, 33, 104, 329, 333, 436, 532
MboI	GATC	7 cut(s)	27, 31, 102, 327, 331, 434, 530
MboII	GAAGA	2 cut(s)	100, 167
MflI	RGATCY	2 cut(s)	102, 434
MlsI	TGGCCA	1 cut(s)	494
MluCI	AATT	8 cut(s)	141, 195, 222, 241, 405, 563, 604, 790
MluNI	TGGCCA	1 cut(s)	494
MmeI	TCCRAC	3 cut(s)	43, 193, 451
MnlI	CCTC	9 cut(s)	116, 184, 497, 540, 553, 676, 732, 763, 771
Mox20I	TGGCCA	1 cut(s)	494
MroXI	GAANNNNTTC	1 cut(s)	14
MscI	TGGCCA	1 cut(s)	494
MseI	TTAA	2 cut(s)	585, 620
Msp20I	TGGCCA	1 cut(s)	494
MspA1I	CMGCKG	2 cut(s)	7, 455
MspI	CCGG	3 cut(s)	151, 383, 528
MspR9I	CCNGG	3 cut(s)	152, 384, 432
Mva1269I	GAATGC	1 cut(s)	272
MvaI	CCWGG	1 cut(s)	432
MvnI	CGCG	1 cut(s)	135
MwoI	GCNNNNNNNGC	1 cut(s)	464
NciI	CCSGG	2 cut(s)	152, 384
NdeII	GATC	7 cut(s)	27, 31, 102, 327, 331, 434, 530
NlaIII	CATG	5 cut(s)	92, 399, 701, 713, 736
NlaIV	GGNNCC	4 cut(s)	303, 381, 436, 720
NmuCI	GTSAC	2 cut(s)	49, 254
NspI	RCATGY	2 cut(s)	92, 713
PaeI	GCATGC	1 cut(s)	713
PciI	ACATGT	1 cut(s)	88
PctI	GAATGC	1 cut(s)	272
PdmI	GAANNNNTTC	1 cut(s)	14
PfeI	GAWTC	4 cut(s)	71, 346, 642, 781
Pfl23II	CGTACG	1 cut(s)	44
PflFI	GACNNNGTC	1 cut(s)	260
PflMI	CCANNNNNTGG	1 cut(s)	341
PkrI	GCNGC	7 cut(s)	6, 137, 394, 457, 460, 616, 688
PpuMI	RGGWCCY	1 cut(s)	718
PscI	ACATGT	1 cut(s)	88
Psp5II	RGGWCCY	1 cut(s)	718
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspLI	CGTACG	1 cut(s)	44
PspN4I	GGNNCC	4 cut(s)	303, 381, 436, 720
PspPI	GGNCC	1 cut(s)	718
PspPPI	RGGWCCY	1 cut(s)	718
PstI	CTGCAG	1 cut(s)	463
PstNI	CAGNNNCTG	2 cut(s)	458, 467
PsuI	RGATCY	2 cut(s)	102, 434
PsyI	GACNNNGTC	1 cut(s)	260
PvuII	CAGCTG	2 cut(s)	7, 455
RsaI	GTAC	2 cut(s)	46, 303
RsaNI	GTAC	2 cut(s)	45, 302
SaqAI	TTAA	2 cut(s)	585, 620
SatI	GCNGC	7 cut(s)	5, 136, 393, 456, 459, 615, 687
Sau3AI	GATC	7 cut(s)	27, 31, 102, 327, 331, 434, 530
Sau96I	GGNCC	1 cut(s)	718
ScrFI	CCNGG	3 cut(s)	152, 384, 432
SfaNI	GCATC	3 cut(s)	497, 568, 601
SfcI	CTRYAG	1 cut(s)	459
SinI	GGWCC	1 cut(s)	718
SmlI	CTYRAG	2 cut(s)	98, 680
SmoI	CTYRAG	2 cut(s)	98, 680
SphI	GCATGC	1 cut(s)	713
Sse9I	AATT	8 cut(s)	141, 195, 222, 241, 405, 563, 604, 790
SsiI	CCGC	2 cut(s)	135, 669
SspI	AATATT	1 cut(s)	293
StyD4I	CCNGG	3 cut(s)	150, 382, 430
StyI	CCWWGG	1 cut(s)	714
TaaI	ACNGT	2 cut(s)	49, 489
TaqI	TCGA	5 cut(s)	30, 120, 330, 371, 645
TaqII	GACCGA	1 cut(s)	216
TasI	AATT	8 cut(s)	141, 195, 222, 241, 405, 563, 604, 790
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	4 cut(s)	71, 346, 642, 781
Tru1I	TTAA	2 cut(s)	585, 620
Tru9I	TTAA	2 cut(s)	585, 620
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	2 cut(s)	49, 254
TseI	GCWGC	6 cut(s)	4, 392, 455, 458, 614, 686
Tsp45I	GTSAC	2 cut(s)	49, 254
TspDTI	ATGAA	2 cut(s)	100, 436
TspGWI	ACGGA	2 cut(s)	32, 106
TspRI	CASTG	1 cut(s)	274
Tth111I	GACNNNGTC	1 cut(s)	260
Van91I	CCANNNNNTGG	1 cut(s)	341
VpaK11BI	GGWCC	1 cut(s)	718
XagI	CCTNNNNNAGG	1 cut(s)	188
XapI	RAATTY	3 cut(s)	563, 604, 790
XceI	RCATGY	2 cut(s)	92, 713
XmiI	GTMKAC	1 cut(s)	651
XmnI	GAANNNNTTC	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.