Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003278

Physical Location & Seq

Genomic Coordinates Reverse (-)

33395376 .. 33410597

Gene Structure 15222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g43110.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGATAACGAAGAGGCATTTCTTTTTCTTTGGACCTAGTAAACAAGCTAGGTTAATTAGCCAAAAAAAAAAAGAAGAAAAGATAATGAGTGAGATTAGTGAAGAGATGAGGATGACAGTAGTGGAGAGCAGGGAGTGGTACATGGCTGCTTATGCACCAGAAGGTGTTCCGACCTCCGATCATCTCAAACTCCGCACAGTCAAAATCTCCCTTGCCCTCGATTCGATCCCCGATCAACATGTCGTCCTCGAGACCCTCTTCATCTCCCTCGATCCGTACTTGCGAAGCAGAATGACTGGCCGAGAAGACGGCCTCTACTCTCCCCAGTACAACCTCAACGAGGTTGTTTCAGCATTTGGGGTTGGAAGGGTAGTTCGGTCGAAGGTTAGTATCTACGGGGAAGGTGACATGGTGATCAGTGGCTTCATCCCTGTTGCTGAATATTGTGTGCTACCATCTCAGGCCTTAATAAGAAAGATCGATGCAGATGCTGGGATTCTATTGCCTGAATACATCAGTACGCTAGGAGTACCTGGGTTTGCAGCATGGATTGGGATTCAGGTGGTGGCAGAGCCAATAAAACCAGGGTCGAATGTGTTCATTTCAGCCGCAGCTGGGGCGGTTGGGATGTATGCCGGGCAGTTGGCCAAGCTCAAAGGCTGTAGGGTCGTCGGAAGCACTGGATCTGACGAGAAAGTTAGGCTCATAAAGGAGGAATTTGGATATGATGATGCATTCAACTATCATACGGAGACAGACTACGACGCTGCTCTAAGCAAGTATTTCCCTAATGGCATAGATGTATACCTTGATAATGTTGGTGGTGAAATGCTTGAGGCTGTTCTCAACCATGTCAACCGGCATGCTAAGATACCTCTTTGCGGCATGATATCTGAATACAACAAGGTTTGGACTGAGAGAAAGGGAGTACGAAATCTGCTAAATTTGGTTGGAAAAGAAGTAAAGATGCAAGGTTTCCTGCTGGGTTCATACTTGGATCGGTTTGGAGATTTTGCAAAAGAGATGGAGAGCCACCTCAAGGAACGAAAGATAAACTCTAAGCTTAAAATCGTTCATGGAATTGACAAGTTCTTGGAGAGCCTCGGGTCACTCTTCACCAGCTCTAATATCGGAAAGGTGGTAATCCAAGTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

386

Amino Acids

42.85

Weight (kDa)

7.68

Isoelectric Point (pI)

29.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N_2	PF16884	17 - 100	1.1e-09	N-terminal domain of oxidoreductase
ADH_zinc_N	PF00107	153 - 285	2.6e-22	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43081 FvH4_6g43100 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110
malus_domestica	MD09G1109600.v1.1 MD09G1109700.v1.1 MD09G1109800.v1.1
prunus_persica	Prupe.3G216700_v2.0.a1 Prupe.3G216700_v2.0.a1
pyrus_communis	pycom09g03220 pycom09g03230
rosa_chinensis	RchiOBHm_Chr2g0159121 RchiOBHm_Chr2g0159131
rosa_laevigata	RLG00000021139 RLG00000021140
rosa_multiflora	Rmu_co8162966.1_g000001 Rmu_co8366625.1_g000001 Rmu_sc0004528.1_g000013 Rmu_sc0013510.1_g000003 Rmu_sc0013510.1_g000004 Rmu_sc0015794.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090750 Rroxscaffold_2G00090760
rosa_rugosa	Rorug02G0474200 Rorug02G0474500 Rorug02G0474500
rosa_samantha	Rh2AG541000 Rh2AG541200 Rh2BG553900 Rh2BG554000 Rh2CG524000 Rh2DG563500
rosa_wichuraiana	Rw2G044760 Rw2G044770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	804
AciI	CCGC	4 cut(s)	193, 609, 620, 882
AclWI	GGATC	4 cut(s)	220, 266, 691, 1005
AcoI	YGGCCR	2 cut(s)	298, 645
AcsI	RAATTY	2 cut(s)	716, 943
AfaI	GTAC	6 cut(s)	140, 278, 329, 520, 531, 930
AfiI	CCNNNNNNNGG	4 cut(s)	340, 615, 881, 1039
AflIII	ACRYGT	1 cut(s)	238
AgsI	TTSAA	1 cut(s)	739
AjnI	CCWGG	2 cut(s)	532, 583
AloI	GAACNNNNNNTCC	2 cut(s)	357, 389
AluBI	AGCT	5 cut(s)	47, 614, 652, 1063, 1122
AluI	AGCT	5 cut(s)	47, 614, 652, 1063, 1122
Alw26I	GTCTC	2 cut(s)	245, 746
AlwI	GGATC	4 cut(s)	220, 266, 691, 1005
AlwNI	CAGNNNCTG	1 cut(s)	491
Ama87I	CYCGRG	2 cut(s)	248, 1103
AoxI	GGCC	4 cut(s)	298, 310, 462, 645
ApeKI	GCWGC	4 cut(s)	146, 542, 611, 767
ApoI	RAATTY	2 cut(s)	716, 943
Asp700I	GAANNNNTTC	2 cut(s)	165, 596
AspS9I	GGNCC	1 cut(s)	32
AsuC2I	CCSGG	1 cut(s)	637
AsuHPI	GGTGA	4 cut(s)	416, 424, 836, 1108
AvaI	CYCGRG	2 cut(s)	248, 1103
AvaII	GGWCC	1 cut(s)	32
BalI	TGGCCA	1 cut(s)	647
BbsI	GAAGAC	1 cut(s)	312
BbvI	GCAGC	4 cut(s)	133, 554, 623, 754
BccI	CCATC	2 cut(s)	463, 1018
BceAI	ACGGC	1 cut(s)	325
BcgI	CGANNNNNNTGC	2 cut(s)	470, 504
BciT130I	CCWGG	2 cut(s)	534, 585
BclI	TGATCA	1 cut(s)	414
BcnI	CCSGG	1 cut(s)	637
BcoDI	GTCTC	2 cut(s)	245, 746
BfaI	CTAG	3 cut(s)	36, 48, 524
BfmI	CTRYAG	1 cut(s)	661
BisI	GCNGC	6 cut(s)	147, 543, 609, 612, 768, 883
BlsI	GCNGC	6 cut(s)	148, 544, 610, 613, 769, 884
Bme1390I	CCNGG	3 cut(s)	534, 585, 637
Bme18I	GGWCC	1 cut(s)	32
BmeT110I	CYCGRG	2 cut(s)	248, 1103
BmgT120I	GGNCC	1 cut(s)	32
BmrFI	CCNGG	3 cut(s)	534, 585, 637
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	4 cut(s)	472, 478, 721, 957
BmuI	ACTGGG	1 cut(s)	319
BpiI	GAAGAC	1 cut(s)	312
BpuEI	CTTGAG	2 cut(s)	854, 1022
BpuMI	CCSGG	1 cut(s)	637
Bsa29I	ATCGAT	1 cut(s)	480
BsaI	GGTCTC	1 cut(s)	245
BsaJI	CCNNGG	3 cut(s)	533, 584, 1102
Bsc4I	CCNNNNNNNGG	4 cut(s)	340, 615, 881, 1039
Bse118I	RCCGGY	1 cut(s)	858
Bse1I	ACTGG	3 cut(s)	301, 325, 685
BseBI	CCWGG	2 cut(s)	534, 585
BseCI	ATCGAT	1 cut(s)	480
BseDI	CCNNGG	3 cut(s)	533, 584, 1102
BseGI	GGATG	3 cut(s)	117, 426, 633
BseLI	CCNNNNNNNGG	4 cut(s)	340, 615, 881, 1039
BseMII	CTCAG	2 cut(s)	473, 906
BseNI	ACTGG	3 cut(s)	301, 325, 685
BseXI	GCAGC	4 cut(s)	133, 554, 623, 754
BseYI	CCCAGC	3 cut(s)	491, 614, 982
Bsh1285I	CGRYCG	1 cut(s)	380
BshFI	GGCC	4 cut(s)	300, 312, 464, 647
BshVI	ATCGAT	1 cut(s)	480
BsiEI	CGRYCG	1 cut(s)	380
BsiHKCI	CYCGRG	2 cut(s)	248, 1103
BsiSI	CCGG	2 cut(s)	636, 859
BslI	CCNNNNNNNGG	4 cut(s)	340, 615, 881, 1039
BsmAI	GTCTC	2 cut(s)	245, 746
BsmI	GAATGC	1 cut(s)	734
BsnI	GGCC	4 cut(s)	300, 312, 464, 647
Bso31I	GGTCTC	1 cut(s)	245
BsoBI	CYCGRG	2 cut(s)	248, 1103
Bsp143I	GATC	8 cut(s)	178, 225, 232, 271, 414, 477, 683, 997
BspACI	CCGC	4 cut(s)	193, 609, 620, 882
BspANI	GGCC	4 cut(s)	300, 312, 464, 647
BspCNI	CTCAG	2 cut(s)	472, 907
BspDI	ATCGAT	1 cut(s)	480
BspPI	GGATC	4 cut(s)	220, 266, 691, 1005
BspTNI	GGTCTC	1 cut(s)	245
BsrFI	RCCGGY	1 cut(s)	858
BsrI	ACTGG	3 cut(s)	301, 325, 685
BssAI	RCCGGY	1 cut(s)	858
BssECI	CCNNGG	3 cut(s)	533, 584, 1102
BssMI	GATC	8 cut(s)	178, 225, 232, 271, 414, 477, 683, 997
BssNAI	GTATAC	1 cut(s)	805
Bst1107I	GTATAC	1 cut(s)	805
Bst2UI	CCWGG	2 cut(s)	534, 585
Bst4CI	ACNGT	2 cut(s)	118, 199
Bst6I	CTCTTC	4 cut(s)	5, 96, 263, 1118
BstC8I	GCNNGC	1 cut(s)	864
BstDEI	CTNAG	5 cut(s)	459, 773, 867, 915, 1059
BstENI	CCTNNNNNAGG	1 cut(s)	338
BstF5I	GGATG	3 cut(s)	117, 426, 633
BstKTI	GATC	8 cut(s)	181, 228, 235, 274, 417, 480, 686, 1000
BstMAI	GTCTC	2 cut(s)	245, 746
BstMBI	GATC	8 cut(s)	178, 225, 232, 271, 414, 477, 683, 997
BstMCI	CGRYCG	1 cut(s)	380
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 617
BstNI	CCWGG	2 cut(s)	534, 585
BstNSI	RCATGY	2 cut(s)	242, 866
BstSCI	CCNGG	3 cut(s)	532, 583, 635
BstSFI	CTRYAG	1 cut(s)	661
BstV1I	GCAGC	4 cut(s)	133, 554, 623, 754
BstV2I	GAAGAC	1 cut(s)	312
BstX2I	RGATCY	1 cut(s)	683
BstYI	RGATCY	1 cut(s)	683
BstZ17I	GTATAC	1 cut(s)	805
Bsu15I	ATCGAT	1 cut(s)	480
BsuRI	GGCC	4 cut(s)	300, 312, 464, 647
BsuTUI	ATCGAT	1 cut(s)	480
BtsCI	GGATG	3 cut(s)	117, 426, 633
BtsIMutI	CAGTG	2 cut(s)	424, 678
Cac8I	GCNNGC	1 cut(s)	864
CaiI	CAGNNNCTG	1 cut(s)	491
Cfr10I	RCCGGY	1 cut(s)	858
Cfr13I	GGNCC	1 cut(s)	32
ClaI	ATCGAT	1 cut(s)	480
CseI	GACGC	1 cut(s)	773
Csp6I	GTAC	6 cut(s)	139, 277, 328, 519, 530, 929
CviAII	CATG	8 cut(s)	142, 239, 409, 546, 851, 863, 886, 1076
CviQI	GTAC	6 cut(s)	139, 277, 328, 519, 530, 929
DdeI	CTNAG	5 cut(s)	459, 773, 867, 915, 1059
DpnI	GATC	8 cut(s)	180, 227, 234, 273, 416, 479, 685, 999
DpnII	GATC	8 cut(s)	178, 225, 232, 271, 414, 477, 683, 997
EaeI	YGGCCR	2 cut(s)	298, 645
Eam1104I	CTCTTC	4 cut(s)	5, 96, 263, 1118
EarI	CTCTTC	4 cut(s)	5, 96, 263, 1118
Eco147I	AGGCCT	1 cut(s)	464
Eco31I	GGTCTC	1 cut(s)	245
Eco32I	GATATC	1 cut(s)	891
Eco47I	GGWCC	1 cut(s)	32
Eco88I	CYCGRG	2 cut(s)	248, 1103
EcoNI	CCTNNNNNAGG	1 cut(s)	338
EcoRII	CCWGG	2 cut(s)	532, 583
EcoRV	GATATC	1 cut(s)	891
EcoT22I	ATGCAT	1 cut(s)	736
FaeI	CATG	8 cut(s)	145, 242, 412, 549, 854, 866, 889, 1079
FatI	CATG	8 cut(s)	141, 238, 408, 545, 850, 862, 885, 1075
FbaI	TGATCA	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	804
Fnu4HI	GCNGC	6 cut(s)	147, 543, 609, 612, 768, 883
FokI	GGATG	3 cut(s)	124, 413, 640
Fsp4HI	GCNGC	6 cut(s)	147, 543, 609, 612, 768, 883
FspBI	CTAG	3 cut(s)	36, 48, 524
GluI	GCNGC	6 cut(s)	147, 543, 609, 612, 768, 883
GsaI	CCCAGC	3 cut(s)	495, 618, 986
HaeIII	GGCC	4 cut(s)	300, 312, 464, 647
HapII	CCGG	2 cut(s)	636, 859
HgaI	GACGC	1 cut(s)	773
Hin1II	CATG	8 cut(s)	145, 242, 412, 549, 854, 866, 889, 1079
HincII	GTYRAC	1 cut(s)	856
HindII	GTYRAC	1 cut(s)	856
HindIII	AAGCTT	1 cut(s)	1061
HinfI	GANTC	3 cut(s)	221, 496, 556
HpaII	CCGG	2 cut(s)	636, 859
HphI	GGTGA	4 cut(s)	416, 424, 836, 1108
Hpy166II	GTNNAC	3 cut(s)	41, 805, 856
Hpy188I	TCNGA	6 cut(s)	171, 178, 674, 688, 895, 1133
Hpy188III	TCNNGA	1 cut(s)	250
Hpy8I	GTNNAC	3 cut(s)	41, 805, 856
Hpy99I	CGWCG	2 cut(s)	674, 767
HpyAV	CCTTC	4 cut(s)	155, 360, 376, 395
HpyCH4III	ACNGT	2 cut(s)	118, 199
HpyCH4V	TGCA	6 cut(s)	155, 485, 542, 734, 970, 1016
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 617
HpyF3I	CTNAG	5 cut(s)	459, 773, 867, 915, 1059
Hsp92II	CATG	8 cut(s)	145, 242, 412, 549, 854, 866, 889, 1079
Ksp22I	TGATCA	1 cut(s)	414
Kzo9I	GATC	8 cut(s)	178, 225, 232, 271, 414, 477, 683, 997
Lsp1109I	GCAGC	4 cut(s)	133, 554, 623, 754
LweI	GCATC	4 cut(s)	472, 478, 721, 957
MaeI	CTAG	3 cut(s)	36, 48, 524
MaeIII	GTNAC	2 cut(s)	404, 1107
MalI	GATC	8 cut(s)	180, 227, 234, 273, 416, 479, 685, 999
MboI	GATC	8 cut(s)	178, 225, 232, 271, 414, 477, 683, 997
MboII	GAAGA	6 cut(s)	22, 86, 113, 250, 317, 1105
MflI	RGATCY	1 cut(s)	683
MlsI	TGGCCA	1 cut(s)	647
MluCI	AATT	4 cut(s)	54, 716, 943, 1080
MluNI	TGGCCA	1 cut(s)	647
MmeI	TCCRAC	4 cut(s)	194, 343, 652, 931
Mox20I	TGGCCA	1 cut(s)	647
Mph1103I	ATGCAT	1 cut(s)	736
MroXI	GAANNNNTTC	2 cut(s)	165, 596
MscI	TGGCCA	1 cut(s)	647
MseI	TTAA	3 cut(s)	53, 467, 1065
Msp20I	TGGCCA	1 cut(s)	647
MspA1I	CMGCKG	1 cut(s)	614
MspI	CCGG	2 cut(s)	636, 859
MspR9I	CCNGG	3 cut(s)	534, 585, 637
Mva1269I	GAATGC	1 cut(s)	734
MvaI	CCWGG	2 cut(s)	534, 585
MwoI	GCNNNNNNNGC	2 cut(s)	152, 617
NciI	CCSGG	1 cut(s)	637
NdeII	GATC	8 cut(s)	178, 225, 232, 271, 414, 477, 683, 997
NlaIII	CATG	8 cut(s)	145, 242, 412, 549, 854, 866, 889, 1079
NmeAIII	GCCGAG	1 cut(s)	326
NmuCI	GTSAC	2 cut(s)	404, 1107
NsiI	ATGCAT	1 cut(s)	736
NspI	RCATGY	2 cut(s)	242, 866
PaeI	GCATGC	1 cut(s)	866
PaeR7I	CTCGAG	1 cut(s)	248
PceI	AGGCCT	1 cut(s)	464
PciI	ACATGT	1 cut(s)	238
PctI	GAATGC	1 cut(s)	734
PdmI	GAANNNNTTC	2 cut(s)	165, 596
PfeI	GAWTC	3 cut(s)	221, 496, 556
PkrI	GCNGC	6 cut(s)	148, 544, 610, 613, 769, 884
PscI	ACATGT	1 cut(s)	238
Psp6I	CCWGG	2 cut(s)	532, 583
PspFI	CCCAGC	3 cut(s)	491, 614, 982
PspGI	CCWGG	2 cut(s)	532, 583
PspPI	GGNCC	1 cut(s)	32
PstNI	CAGNNNCTG	1 cut(s)	491
PsuI	RGATCY	1 cut(s)	683
PvuII	CAGCTG	1 cut(s)	614
RsaI	GTAC	6 cut(s)	140, 278, 329, 520, 531, 930
RsaNI	GTAC	6 cut(s)	139, 277, 328, 519, 530, 929
SaqAI	TTAA	3 cut(s)	53, 467, 1065
SatI	GCNGC	6 cut(s)	147, 543, 609, 612, 768, 883
Sau3AI	GATC	8 cut(s)	178, 225, 232, 271, 414, 477, 683, 997
Sau96I	GGNCC	1 cut(s)	32
ScrFI	CCNGG	3 cut(s)	534, 585, 637
SfaNI	GCATC	4 cut(s)	472, 478, 721, 957
SfcI	CTRYAG	1 cut(s)	661
Sfr274I	CTCGAG	1 cut(s)	248
SinI	GGWCC	1 cut(s)	32
SlaI	CTCGAG	1 cut(s)	248
SmlI	CTYRAG	3 cut(s)	248, 833, 1037
SmoI	CTYRAG	3 cut(s)	248, 833, 1037
SphI	GCATGC	1 cut(s)	866
Sse9I	AATT	4 cut(s)	54, 716, 943, 1080
SseBI	AGGCCT	1 cut(s)	464
SsiI	CCGC	4 cut(s)	193, 609, 620, 882
SspI	AATATT	1 cut(s)	443
SspMI	CTAG	3 cut(s)	36, 48, 524
StuI	AGGCCT	1 cut(s)	464
StyD4I	CCNGG	3 cut(s)	532, 583, 635
TaaI	ACNGT	2 cut(s)	118, 199
TaqI	TCGA	7 cut(s)	219, 224, 249, 270, 380, 480, 590
TaqII	GACCGA	1 cut(s)	366
TasI	AATT	4 cut(s)	54, 716, 943, 1080
TatI	WGTACW	1 cut(s)	327
TauI	GCSGC	2 cut(s)	611, 885
TfiI	GAWTC	3 cut(s)	221, 496, 556
Tru1I	TTAA	3 cut(s)	53, 467, 1065
Tru9I	TTAA	3 cut(s)	53, 467, 1065
TscAI	CASTG	2 cut(s)	424, 685
TseFI	GTSAC	2 cut(s)	404, 1107
TseI	GCWGC	4 cut(s)	146, 542, 611, 767
Tsp45I	GTSAC	2 cut(s)	404, 1107
TspDTI	ATGAA	5 cut(s)	250, 415, 589, 978, 1064
TspGWI	ACGGA	2 cut(s)	264, 764
TspRI	CASTG	2 cut(s)	424, 685
VpaK11BI	GGWCC	1 cut(s)	32
XagI	CCTNNNNNAGG	1 cut(s)	338
XapI	RAATTY	2 cut(s)	716, 943
XceI	RCATGY	2 cut(s)	242, 866
XhoI	CTCGAG	1 cut(s)	248
XmiI	GTMKAC	1 cut(s)	804
XmnI	GAANNNNTTC	2 cut(s)	165, 596
XspI	CTAG	3 cut(s)	36, 48, 524
Zsp2I	ATGCAT	1 cut(s)	736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.