Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003278

Physical Location & Seq

Genomic Coordinates Forward (+)

2403899 .. 2407403

Gene Structure 3505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g03230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGCTATACAAATTAAAAAGGAAGAGGCCGGCACTAAGAAGAAACAAAATCAGTATAGAAGGTGAAGAAGCTAGGCTAGAGAGATCGAGACAGAGAGAGAGATGGCAGAAGTGGAAAGCAGAGAATGGTACTTGGCTGCTTATGCAGCTGAAGGTGTTCCAACTTAAACTCCGTACGGTCACACTCTCACTATCCCCTGATTCCATTCCCGAACAACATGTTATTCTTGAGACCCTCTTCATCTCCATCGAGCCATATTTACGGAGCAGCATCACTGGCCGGGAAGATGGGCTATGCATCCCTCAGTTCAACCTTGACCAGGTAATTACAGCATTTGGGGTTGGAAGGGTAATTCGGTCAAAAGATGGTAACTATGCTGAAGGTGGCATAGTCGTCAGTGCATTCACATCTGTTGCTGAATATTGTGCGGTACCATCCCAGTTGATAGCAAGAAAGATCGATACAAATAGTGGCATGCCCTTGCCTGAATATATCAGCTTGTTAGGGGTGCCGGGGTTTGCAGCATGGGTGGGAATTGAGTTGCTGGCAAACCCAAAATCAGGATCCAATGTGTTCATTTCAGCTGCTGCTGGGGCTGTTGGAATGTATGCTGGACAGTTGGCCAAGCTAAGAGGATGCAGGGTCATCGGAAGCACTGGATCAGATGAGAAGGTGAGGCTAATCAAGGAGGAATTTGGATATGATGATGCTTTTAACTACCACACAGAGACAGATTTTGATGCTGCTTTAAGCAAGTATTTCCCTAACGGAATTGATGTCTACCTTGACAATGTTGGCGGTGAAATGCTTGAGGCTGCTCTTAACCATGTCAATAAGCATGCAAAGATCCCTCTTTGTGGCATGATTTCTGGCTACAATAAGGTTTGGACTGAGAGAGAGGGGGTGAGGAATCTGCTGAATTTAATCGGAAGGGAGGTGAATATGCAAGGGTTCTTGGTGGGTTCATACCTGCATCGTTATGGAGATTTTGCAACCGAGATGGAGAGCCACCTAAAGCAAGGCAAGATTGGTTATTCTAAGCTCAAAATCTTCCATGGAATTGAAACATTATTGGAGAGCTTAGGATCCCTTTTCACCAGCTCTAATATTGGGAAAGTAGTAATCCAATCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

379

Amino Acids

42.05

Weight (kDa)

8.95

Isoelectric Point (pI)

36.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N_2	PF16884	68 - 143	4.2e-10	N-terminal domain of oxidoreductase
ADH_zinc_N	PF00107	199 - 327	1.9e-23	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43081 FvH4_6g43100 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110
malus_domestica	MD09G1109600.v1.1 MD09G1109700.v1.1 MD09G1109800.v1.1
prunus_persica	Prupe.3G216700_v2.0.a1 Prupe.3G216700_v2.0.a1
pyrus_communis	pycom09g03220 pycom09g03230
rosa_chinensis	RchiOBHm_Chr2g0159121 RchiOBHm_Chr2g0159131
rosa_laevigata	RLG00000021139 RLG00000021140
rosa_multiflora	Rmu_co8162966.1_g000001 Rmu_co8366625.1_g000001 Rmu_sc0004528.1_g000013 Rmu_sc0013510.1_g000003 Rmu_sc0013510.1_g000004 Rmu_sc0015794.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090750 Rroxscaffold_2G00090760
rosa_rugosa	Rorug02G0474200 Rorug02G0474500 Rorug02G0474500
rosa_samantha	Rh2AG541000 Rh2AG541200 Rh2BG553900 Rh2BG554000 Rh2CG524000 Rh2DG563500
rosa_wichuraiana	Rw2G044760 Rw2G044770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	978
Acc65I	GGTACC	1 cut(s)	430
AccB1I	GGYRCC	2 cut(s)	430, 508
AccI	GTMKAC	1 cut(s)	780
AciI	CCGC	2 cut(s)	428, 798
AclWI	GGATC	6 cut(s)	558, 571, 667, 841, 1080, 1093
AcoI	YGGCCR	2 cut(s)	277, 621
AcsI	RAATTY	2 cut(s)	692, 919
AcuI	CTGAAG	2 cut(s)	170, 399
AfaI	GTAC	3 cut(s)	130, 175, 432
AfiI	CCNNNNNNNGG	3 cut(s)	319, 560, 857
AflIII	ACRYGT	1 cut(s)	217
AgsI	TTSAA	2 cut(s)	310, 1064
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	8 cut(s)	71, 148, 498, 584, 628, 1042, 1080, 1101
AluI	AGCT	8 cut(s)	71, 148, 498, 584, 628, 1042, 1080, 1101
Alw26I	GTCTC	3 cut(s)	82, 224, 722
AlwI	GGATC	6 cut(s)	558, 571, 667, 841, 1080, 1093
AlwNI	CAGNNNCTG	1 cut(s)	587
AoxI	GGCC	3 cut(s)	26, 277, 621
ApeKI	GCWGC	8 cut(s)	136, 145, 267, 521, 584, 587, 743, 815
ApoI	RAATTY	2 cut(s)	692, 919
Asp700I	GAANNNNTTC	1 cut(s)	155
Asp718I	GGTACC	1 cut(s)	430
AsuC2I	CCSGG	2 cut(s)	281, 513
AsuHPI	GGTGA	6 cut(s)	74, 685, 812, 916, 949, 1087
BalI	TGGCCA	1 cut(s)	623
BamHI	GGATCC	2 cut(s)	563, 1085
BanI	GGYRCC	2 cut(s)	430, 508
BbvI	GCAGC	8 cut(s)	123, 157, 279, 533, 571, 574, 730, 802
BccI	CCATC	6 cut(s)	96, 254, 281, 359, 442, 994
BcgI	CGANNNNNNTGC	2 cut(s)	628, 662
BciT130I	CCWGG	1 cut(s)	320
BcnI	CCSGG	2 cut(s)	281, 513
BcoDI	GTCTC	3 cut(s)	82, 224, 722
BfaI	CTAG	2 cut(s)	72, 77
BfuAI	ACCTGC	1 cut(s)	978
BisI	GCNGC	8 cut(s)	137, 146, 268, 522, 585, 588, 744, 816
BlsI	GCNGC	8 cut(s)	138, 147, 269, 523, 586, 589, 745, 817
Bme1390I	CCNGG	3 cut(s)	281, 320, 513
BmiI	GGNNCC	4 cut(s)	432, 510, 565, 1087
BmrFI	CCNGG	3 cut(s)	281, 320, 513
BmrI	ACTGGG	1 cut(s)	433
BmsI	GCATC	6 cut(s)	279, 306, 626, 697, 730, 982
BmuI	ACTGGG	1 cut(s)	433
Bpu10I	CCTNAGC	1 cut(s)	1081
BpuEI	CTTGAG	2 cut(s)	248, 830
BpuMI	CCSGG	2 cut(s)	281, 513
Bsa29I	ATCGAT	1 cut(s)	459
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	512, 1054
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	3 cut(s)	319, 560, 857
Bse118I	RCCGGY	1 cut(s)	28
Bse1I	ACTGG	3 cut(s)	280, 439, 661
BseBI	CCWGG	1 cut(s)	320
BseCI	ATCGAT	1 cut(s)	459
BseDI	CCNNGG	2 cut(s)	512, 1054
BseGI	GGATG	3 cut(s)	297, 434, 641
BseLI	CCNNNNNNNGG	3 cut(s)	319, 560, 857
BseMII	CTCAG	2 cut(s)	317, 882
BseNI	ACTGG	3 cut(s)	280, 439, 661
BseXI	GCAGC	8 cut(s)	123, 157, 279, 533, 571, 574, 730, 802
BseYI	CCCAGC	1 cut(s)	590
BshFI	GGCC	3 cut(s)	28, 279, 623
BshNI	GGYRCC	2 cut(s)	430, 508
BshVI	ATCGAT	1 cut(s)	459
BsiSI	CCGG	3 cut(s)	29, 280, 512
BsiWI	CGTACG	1 cut(s)	173
BslI	CCNNNNNNNGG	3 cut(s)	319, 560, 857
BsmAI	GTCTC	3 cut(s)	82, 224, 722
BsmI	GAATGC	1 cut(s)	401
BsnI	GGCC	3 cut(s)	28, 279, 623
Bso31I	GGTCTC	1 cut(s)	224
Bsp143I	GATC	6 cut(s)	83, 456, 563, 659, 846, 1085
Bsp19I	CCATGG	1 cut(s)	1054
BspACI	CCGC	2 cut(s)	428, 798
BspANI	GGCC	3 cut(s)	28, 279, 623
BspCNI	CTCAG	2 cut(s)	316, 883
BspDI	ATCGAT	1 cut(s)	459
BspLI	GGNNCC	4 cut(s)	432, 510, 565, 1087
BspMI	ACCTGC	1 cut(s)	978
BspPI	GGATC	6 cut(s)	558, 571, 667, 841, 1080, 1093
BspT107I	GGYRCC	2 cut(s)	430, 508
BspTNI	GGTCTC	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	28
BsrI	ACTGG	3 cut(s)	280, 439, 661
BssAI	RCCGGY	1 cut(s)	28
BssECI	CCNNGG	2 cut(s)	512, 1054
BssMI	GATC	6 cut(s)	83, 456, 563, 659, 846, 1085
BssT1I	CCWWGG	1 cut(s)	1054
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	2 cut(s)	178, 618
Bst6I	CTCTTC	2 cut(s)	17, 242
BstC8I	GCNNGC	4 cut(s)	30, 476, 546, 840
BstDEI	CTNAG	6 cut(s)	35, 303, 629, 891, 1038, 1081
BstDSI	CCRYGG	1 cut(s)	1054
BstENI	CCTNNNNNAGG	1 cut(s)	317
BstF5I	GGATG	3 cut(s)	297, 434, 641
BstKTI	GATC	6 cut(s)	86, 459, 566, 662, 849, 1088
BstMAI	GTCTC	3 cut(s)	82, 224, 722
BstMBI	GATC	6 cut(s)	83, 456, 563, 659, 846, 1085
BstMWI	GCNNNNNNNGC	4 cut(s)	142, 145, 276, 593
BstNI	CCWGG	1 cut(s)	320
BstNSI	RCATGY	3 cut(s)	221, 478, 842
BstSCI	CCNGG	3 cut(s)	279, 318, 511
BstV1I	GCAGC	8 cut(s)	123, 157, 279, 533, 571, 574, 730, 802
BstX2I	RGATCY	3 cut(s)	563, 846, 1085
BstYI	RGATCY	3 cut(s)	563, 846, 1085
Bsu15I	ATCGAT	1 cut(s)	459
BsuRI	GGCC	3 cut(s)	28, 279, 623
BsuTUI	ATCGAT	1 cut(s)	459
BtgI	CCRYGG	1 cut(s)	1054
BtsCI	GGATG	3 cut(s)	297, 434, 641
BtsIMutI	CAGTG	3 cut(s)	273, 403, 654
BveI	ACCTGC	1 cut(s)	978
Cac8I	GCNNGC	4 cut(s)	30, 476, 546, 840
CaiI	CAGNNNCTG	1 cut(s)	587
Cfr10I	RCCGGY	1 cut(s)	28
ClaI	ATCGAT	1 cut(s)	459
CsiI	ACCWGGT	1 cut(s)	318
Csp6I	GTAC	3 cut(s)	129, 174, 431
CviAII	CATG	7 cut(s)	218, 475, 525, 827, 839, 862, 1055
CviQI	GTAC	3 cut(s)	129, 174, 431
DdeI	CTNAG	6 cut(s)	35, 303, 629, 891, 1038, 1081
DpnI	GATC	6 cut(s)	85, 458, 565, 661, 848, 1087
DpnII	GATC	6 cut(s)	83, 456, 563, 659, 846, 1085
EaeI	YGGCCR	2 cut(s)	277, 621
Eam1104I	CTCTTC	2 cut(s)	17, 242
EarI	CTCTTC	2 cut(s)	17, 242
Eco130I	CCWWGG	1 cut(s)	1054
Eco31I	GGTCTC	1 cut(s)	224
Eco57I	CTGAAG	2 cut(s)	170, 399
EcoNI	CCTNNNNNAGG	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	1054
EcoT22I	ATGCAT	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	1054
FaeI	CATG	7 cut(s)	221, 478, 528, 830, 842, 865, 1058
FatI	CATG	7 cut(s)	217, 474, 524, 826, 838, 861, 1054
FblI	GTMKAC	1 cut(s)	780
Fnu4HI	GCNGC	8 cut(s)	137, 146, 268, 522, 585, 588, 744, 816
FokI	GGATG	3 cut(s)	284, 421, 648
Fsp4HI	GCNGC	8 cut(s)	137, 146, 268, 522, 585, 588, 744, 816
FspBI	CTAG	2 cut(s)	72, 77
GluI	GCNGC	8 cut(s)	137, 146, 268, 522, 585, 588, 744, 816
GsaI	CCCAGC	1 cut(s)	594
HaeIII	GGCC	3 cut(s)	28, 279, 623
HapII	CCGG	3 cut(s)	29, 280, 512
Hin1II	CATG	7 cut(s)	221, 478, 528, 830, 842, 865, 1058
HinfI	GANTC	2 cut(s)	200, 910
HpaII	CCGG	3 cut(s)	29, 280, 512
HphI	GGTGA	6 cut(s)	74, 685, 812, 916, 949, 1087
Hpy166II	GTNNAC	1 cut(s)	781
Hpy188I	TCNGA	3 cut(s)	650, 664, 929
Hpy188III	TCNNGA	4 cut(s)	87, 209, 227, 561
Hpy8I	GTNNAC	1 cut(s)	781
HpyAV	CCTTC	6 cut(s)	53, 145, 339, 374, 664, 924
HpyCH4III	ACNGT	2 cut(s)	178, 618
HpyCH4V	TGCA	9 cut(s)	145, 297, 401, 521, 639, 842, 946, 973, 992
HpyF10VI	GCNNNNNNNGC	4 cut(s)	142, 145, 276, 593
HpyF3I	CTNAG	6 cut(s)	35, 303, 629, 891, 1038, 1081
Hsp92II	CATG	7 cut(s)	221, 478, 528, 830, 842, 865, 1058
KpnI	GGTACC	1 cut(s)	434
KroI	GCCGGC	1 cut(s)	28
KroNI	GCCGGC	1 cut(s)	30
Kzo9I	GATC	6 cut(s)	83, 456, 563, 659, 846, 1085
LmnI	GCTCC	1 cut(s)	264
Lsp1109I	GCAGC	8 cut(s)	123, 157, 279, 533, 571, 574, 730, 802
LweI	GCATC	6 cut(s)	279, 306, 626, 697, 730, 982
MabI	ACCWGGT	1 cut(s)	318
MaeI	CTAG	2 cut(s)	72, 77
MaeIII	GTNAC	2 cut(s)	178, 368
MalI	GATC	6 cut(s)	85, 458, 565, 661, 848, 1087
MboI	GATC	6 cut(s)	83, 456, 563, 659, 846, 1085
MboII	GAAGA	6 cut(s)	34, 51, 77, 229, 296, 1042
MflI	RGATCY	3 cut(s)	563, 846, 1085
MlsI	TGGCCA	1 cut(s)	623
MluCI	AATT	8 cut(s)	11, 324, 351, 534, 692, 771, 919, 1059
MluNI	TGGCCA	1 cut(s)	623
MmeI	TCCRAC	3 cut(s)	184, 322, 580
Mox20I	TGGCCA	1 cut(s)	623
Mph1103I	ATGCAT	1 cut(s)	299
MroNI	GCCGGC	1 cut(s)	28
MroXI	GAANNNNTTC	1 cut(s)	155
MscI	TGGCCA	1 cut(s)	623
MseI	TTAA	6 cut(s)	14, 165, 714, 749, 822, 923
MslI	CAYNNNNRTG	1 cut(s)	978
Msp20I	TGGCCA	1 cut(s)	623
MspA1I	CMGCKG	2 cut(s)	148, 584
MspI	CCGG	3 cut(s)	29, 280, 512
MspR9I	CCNGG	3 cut(s)	281, 320, 513
Mva1269I	GAATGC	1 cut(s)	401
MvaI	CCWGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	4 cut(s)	142, 145, 276, 593
NaeI	GCCGGC	1 cut(s)	30
NciI	CCSGG	2 cut(s)	281, 513
NcoI	CCATGG	1 cut(s)	1054
NdeII	GATC	6 cut(s)	83, 456, 563, 659, 846, 1085
NgoMIV	GCCGGC	1 cut(s)	28
NlaIII	CATG	7 cut(s)	221, 478, 528, 830, 842, 865, 1058
NlaIV	GGNNCC	4 cut(s)	432, 510, 565, 1087
NmuCI	GTSAC	1 cut(s)	178
NsiI	ATGCAT	1 cut(s)	299
NspI	RCATGY	3 cut(s)	221, 478, 842
PaeI	GCATGC	2 cut(s)	478, 842
PciI	ACATGT	1 cut(s)	217
PctI	GAATGC	1 cut(s)	401
PdiI	GCCGGC	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	200, 910
Pfl23II	CGTACG	1 cut(s)	173
PkrI	GCNGC	8 cut(s)	138, 147, 269, 523, 586, 589, 745, 817
PscI	ACATGT	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	318
PspFI	CCCAGC	1 cut(s)	590
PspGI	CCWGG	1 cut(s)	318
PspLI	CGTACG	1 cut(s)	173
PspN4I	GGNNCC	4 cut(s)	432, 510, 565, 1087
PstNI	CAGNNNCTG	1 cut(s)	587
PsuI	RGATCY	3 cut(s)	563, 846, 1085
PvuII	CAGCTG	2 cut(s)	148, 584
RsaI	GTAC	3 cut(s)	130, 175, 432
RsaNI	GTAC	3 cut(s)	129, 174, 431
RseI	CAYNNNNRTG	1 cut(s)	978
SaqAI	TTAA	6 cut(s)	14, 165, 714, 749, 822, 923
SatI	GCNGC	8 cut(s)	137, 146, 268, 522, 585, 588, 744, 816
Sau3AI	GATC	6 cut(s)	83, 456, 563, 659, 846, 1085
ScrFI	CCNGG	3 cut(s)	281, 320, 513
SexAI	ACCWGGT	1 cut(s)	318
SfaNI	GCATC	6 cut(s)	279, 306, 626, 697, 730, 982
SmiMI	CAYNNNNRTG	1 cut(s)	978
SmlI	CTYRAG	2 cut(s)	227, 809
SmoI	CTYRAG	2 cut(s)	227, 809
SphI	GCATGC	2 cut(s)	478, 842
Sse9I	AATT	8 cut(s)	11, 324, 351, 534, 692, 771, 919, 1059
SsiI	CCGC	2 cut(s)	428, 798
SspI	AATATT	2 cut(s)	422, 1108
SspMI	CTAG	2 cut(s)	72, 77
StyD4I	CCNGG	3 cut(s)	279, 318, 511
StyI	CCWWGG	1 cut(s)	1054
TaaI	ACNGT	2 cut(s)	178, 618
TaqI	TCGA	3 cut(s)	86, 249, 459
TaqII	GACCGA	1 cut(s)	345
TasI	AATT	8 cut(s)	11, 324, 351, 534, 692, 771, 919, 1059
TfiI	GAWTC	2 cut(s)	200, 910
Tru1I	TTAA	6 cut(s)	14, 165, 714, 749, 822, 923
Tru9I	TTAA	6 cut(s)	14, 165, 714, 749, 822, 923
TscAI	CASTG	3 cut(s)	280, 403, 661
TseFI	GTSAC	1 cut(s)	178
TseI	GCWGC	8 cut(s)	136, 145, 267, 521, 584, 587, 743, 815
Tsp45I	GTSAC	1 cut(s)	178
TspDTI	ATGAA	3 cut(s)	229, 565, 954
TspGWI	ACGGA	3 cut(s)	161, 277, 783
TspRI	CASTG	3 cut(s)	280, 403, 661
XagI	CCTNNNNNAGG	1 cut(s)	317
XapI	RAATTY	2 cut(s)	692, 919
XceI	RCATGY	3 cut(s)	221, 478, 842
XmiI	GTMKAC	1 cut(s)	780
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	2 cut(s)	72, 77
Zsp2I	ATGCAT	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.