Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8162966.1

Orthogroup ID

OG0003278

Physical Location & Seq

Genomic Coordinates Reverse (-)

8 .. 577

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8162966.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atgcttgaggctgttctcaaccacgtcaaccaacacgcaaagatacctctttgtggcatgatatctggctacaacaaggtttggactgagagagagggagtgaggaatctgctaaatttgataggaaaagatgtgaagatgcaaggtttcatggtgggttcatacttggatcgttttggggattttgcaaaggagatggagagccacctaaaggaacgaaaaattaattctaagcttaaaatctataatggaattgacaagttcttggagagcctacggtcactcttcaccagctctaatatcggaaaagtggttatccaagtcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

109

Amino Acids

12.46

Weight (kDa)

9.59

Isoelectric Point (pI)

15.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43081 FvH4_6g43100 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110
malus_domestica	MD09G1109600.v1.1 MD09G1109700.v1.1 MD09G1109800.v1.1
prunus_persica	Prupe.3G216700_v2.0.a1 Prupe.3G216700_v2.0.a1
pyrus_communis	pycom09g03220 pycom09g03230
rosa_chinensis	RchiOBHm_Chr2g0159121 RchiOBHm_Chr2g0159131
rosa_laevigata	RLG00000021139 RLG00000021140
rosa_multiflora	Rmu_co8162966.1_g000001 Rmu_co8366625.1_g000001 Rmu_sc0004528.1_g000013 Rmu_sc0013510.1_g000003 Rmu_sc0013510.1_g000004 Rmu_sc0015794.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090750 Rroxscaffold_2G00090760
rosa_rugosa	Rorug02G0474200 Rorug02G0474500 Rorug02G0474500
rosa_samantha	Rh2AG541000 Rh2AG541200 Rh2BG553900 Rh2BG554000 Rh2CG524000 Rh2DG563500
rosa_wichuraiana	Rw2G044760 Rw2G044770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	177
AcsI	RAATTY	1 cut(s)	115
AfiI	CCNNNNNNNGG	2 cut(s)	53, 211
AjiI	CACGTC	1 cut(s)	25
AluBI	AGCT	2 cut(s)	235, 294
AluI	AGCT	2 cut(s)	235, 294
AlwI	GGATC	1 cut(s)	177
ApoI	RAATTY	1 cut(s)	115
AseI	ATTAAT	1 cut(s)	225
AsuHPI	GGTGA	1 cut(s)	280
BccI	CCATC	1 cut(s)	190
BmgBI	CACGTC	1 cut(s)	25
BmsI	GCATC	1 cut(s)	129
BpuEI	CTTGAG	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 211
BseLI	CCNNNNNNNGG	2 cut(s)	53, 211
BseMII	CTCAG	1 cut(s)	78
BslI	CCNNNNNNNGG	2 cut(s)	53, 211
Bsp143I	GATC	1 cut(s)	169
BspCNI	CTCAG	1 cut(s)	79
BspPI	GGATC	1 cut(s)	177
BssMI	GATC	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	279
Bst6I	CTCTTC	1 cut(s)	290
BstDEI	CTNAG	2 cut(s)	87, 231
BstKTI	GATC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	169
BtrI	CACGTC	1 cut(s)	25
CviAII	CATG	2 cut(s)	58, 151
CviJI	RGCY	6 cut(s)	11, 69, 204, 235, 273, 294
CviKI_1	RGCY	6 cut(s)	11, 69, 204, 235, 273, 294
DdeI	CTNAG	2 cut(s)	87, 231
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Eco32I	GATATC	1 cut(s)	63
EcoRV	GATATC	1 cut(s)	63
FaeI	CATG	2 cut(s)	61, 154
FaiI	YATR	4 cut(s)	59, 152, 163, 246
FatI	CATG	2 cut(s)	57, 150
Hin1II	CATG	2 cut(s)	61, 154
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	1 cut(s)	106
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	305
Hpy8I	GTNNAC	1 cut(s)	28
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	2 cut(s)	142, 188
HpyF3I	CTNAG	2 cut(s)	87, 231
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	2 cut(s)	61, 154
Kzo9I	GATC	1 cut(s)	169
LpnPI	CCDG	2 cut(s)	51, 304
LweI	GCATC	1 cut(s)	129
MaeII	ACGT	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	279
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	2 cut(s)	148, 277
MluCI	AATT	4 cut(s)	115, 222, 226, 252
MnlI	CCTC	3 cut(s)	57, 88, 96
MseI	TTAA	2 cut(s)	225, 237
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	2 cut(s)	61, 154
NmuCI	GTSAC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	106
PshBI	ATTAAT	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	225, 237
Sau3AI	GATC	1 cut(s)	169
SetI	ASST	7 cut(s)	27, 49, 81, 148, 210, 237, 296
SfaNI	GCATC	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	5
SmoI	CTYRAG	1 cut(s)	5
Sse9I	AATT	4 cut(s)	115, 222, 226, 252
TaaI	ACNGT	1 cut(s)	279
TaiI	ACGT	1 cut(s)	27
TasI	AATT	4 cut(s)	115, 222, 226, 252
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	2 cut(s)	225, 237
Tru9I	TTAA	2 cut(s)	225, 237
TseFI	GTSAC	1 cut(s)	279
Tsp45I	GTSAC	1 cut(s)	279
TspDTI	ATGAA	2 cut(s)	139, 150
VspI	ATTAAT	1 cut(s)	225
XapI	RAATTY	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.