Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003278

Physical Location & Seq

Genomic Coordinates Reverse (-)

72251487 .. 72269396

Gene Structure 17910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021139

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAGTGCTACAGTAGTCGAAAGCAGAGAATGGTACTTGGCTGCTTATGGTCCTGAAGGTATTCCAACTTCAGATCATCTGAAAATTCGCTGCGTCTCACTGGCCCTTGATGCAATCCCTGAACAACATGTCGTCCTTGAGACGCTTTTCGTATCCGTTGAACCATACCTGCGTGGCAGAATGACCGGCCTGGAAGAAGGGCTATACTTTGCGCAGTTCAACCTTAACGAGGTAGTTTCAGCACTTGGTGTTGGAAGAGTAATTATGTCAAAGGATAGTGACTATGGTGAAGGTGACGTAGTGATCTGTCCTTCCACATCTTTTGCCGAGTACTGTGTGGTATCATCCCAGAATTTAAGAAAGGTGGAACCAAATGCTGGGATTCCATTGCCTGAATATCTCGGTTTGTTAGGGATACCTGGGTTGGCAGCGTGGGTGGGAATAGAGGTGATCGCGGAGCCAATAAAAGCAGGGTCGAATGTGTTCATCTCAGCCGCGGCCAGTGCCGTTGGGATTTATGCAGGGCAGTTGGCCAAGCTCAAAGGCTGTCGTGTAGTTGGAAGCACTGGAACTGACGACAAGGTAAGAAATTATAGAATTGTTTACAGGTATTTCCCAAATGGAATTGATATATATCTTGACAATGTTGGTGGTAAAATGCTCGAGGCTGTTCTCAACCATGTCAACAAGCATGCAAAGGTCTCCCTTTGTGGCATGATATCTGGCTACAATAAGGTATGGACTGAGAGGGAGGGAGTGAGGAATCTGCTGAACCTGATCGGCAAACAAGTGAAGATGCAAGGGTACATGGTGGGTTCATACTTTGATCGTTTTGGAGATTTTGCAAAGGAGATGGAGAGCCATCTAAAGGAAGGCAAGATTGTTTCTAAGATCAAAATCGTCCATGGAATTGAAAATTTCTTGGAGAGCTTAGGGTCACTGTTTACCAGCTCAAATATTGGGAAAGTAGTAATCCAAGTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

329

Amino Acids

35.79

Weight (kDa)

6.61

Isoelectric Point (pI)

19.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N_2	PF16884	9 - 122	3.9e-17	N-terminal domain of oxidoreductase
ADH_zinc_N	PF00107	169 - 283	4.7e-09	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43081 FvH4_6g43100 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110
malus_domestica	MD09G1109600.v1.1 MD09G1109700.v1.1 MD09G1109800.v1.1
prunus_persica	Prupe.3G216700_v2.0.a1 Prupe.3G216700_v2.0.a1
pyrus_communis	pycom09g03220 pycom09g03230
rosa_chinensis	RchiOBHm_Chr2g0159121 RchiOBHm_Chr2g0159131
rosa_laevigata	RLG00000021139 RLG00000021140
rosa_multiflora	Rmu_co8162966.1_g000001 Rmu_co8366625.1_g000001 Rmu_sc0004528.1_g000013 Rmu_sc0013510.1_g000003 Rmu_sc0013510.1_g000004 Rmu_sc0015794.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090750 Rroxscaffold_2G00090760
rosa_rugosa	Rorug02G0474200 Rorug02G0474500 Rorug02G0474500
rosa_samantha	Rh2AG541000 Rh2AG541200 Rh2BG553900 Rh2BG554000 Rh2CG524000 Rh2DG563500
rosa_wichuraiana	Rw2G044760 Rw2G044770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	213
Acc36I	ACCTGC	1 cut(s)	177
AccB7I	CCANNNNNTGG	1 cut(s)	377
AccII	CGCG	2 cut(s)	455, 497
AciI	CCGC	3 cut(s)	455, 495, 497
AcoI	YGGCCR	2 cut(s)	498, 531
AcsI	RAATTY	3 cut(s)	84, 352, 916
AcuI	CTGAAG	2 cut(s)	54, 75
AdeI	CACNNNGTG	1 cut(s)	248
AfaI	GTAC	3 cut(s)	35, 332, 806
AfiI	CCNNNNNNNGG	3 cut(s)	229, 377, 868
AflIII	ACRYGT	1 cut(s)	127
AgsI	TTSAA	3 cut(s)	161, 220, 914
AjnI	CCWGG	2 cut(s)	189, 418
AluBI	AGCT	3 cut(s)	538, 930, 951
AluI	AGCT	3 cut(s)	538, 930, 951
Alw26I	GTCTC	3 cut(s)	100, 134, 706
Ama87I	CYCGRG	1 cut(s)	662
AoxI	GGCC	4 cut(s)	102, 187, 498, 531
ApeKI	GCWGC	3 cut(s)	41, 90, 428
ApoI	RAATTY	3 cut(s)	84, 352, 916
Asp700I	GAANNNNTTC	2 cut(s)	60, 482
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	2 cut(s)	50, 103
AsuHPI	GGTGA	3 cut(s)	299, 305, 460
AvaI	CYCGRG	1 cut(s)	662
AvaII	GGWCC	1 cut(s)	50
BaeI	ACNNNNGTAYC	2 cut(s)	407, 440
BalI	TGGCCA	1 cut(s)	533
BarI	GAAGNNNNNNTAC	2 cut(s)	52, 84
BbvI	GCAGC	3 cut(s)	28, 77, 440
BccI	CCATC	2 cut(s)	847, 870
BceAI	ACGGC	1 cut(s)	491
BciT130I	CCWGG	2 cut(s)	191, 420
BciVI	GTATCC	2 cut(s)	163, 408
BcoDI	GTCTC	3 cut(s)	100, 134, 706
BfmI	CTRYAG	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	177
BfuI	GTATCC	2 cut(s)	163, 408
BisI	GCNGC	5 cut(s)	42, 91, 429, 495, 498
BlsI	GCNGC	5 cut(s)	43, 92, 430, 496, 499
BmcAI	AGTACT	1 cut(s)	332
Bme1390I	CCNGG	2 cut(s)	191, 420
Bme18I	GGWCC	1 cut(s)	50
BmeT110I	CYCGRG	1 cut(s)	662
BmgT120I	GGNCC	2 cut(s)	50, 103
BmiI	GGNNCC	2 cut(s)	369, 459
BmrFI	CCNGG	2 cut(s)	191, 420
BmsI	GCATC	2 cut(s)	100, 786
Bpu10I	CCTNAGC	1 cut(s)	931
BpuEI	CTTGAG	1 cut(s)	158
BsaBI	GATNNNNATC	2 cut(s)	633, 896
BsaI	GGTCTC	1 cut(s)	706
BsaJI	CCNNGG	3 cut(s)	419, 495, 904
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 377, 868
Bse118I	RCCGGY	1 cut(s)	185
Bse1I	ACTGG	3 cut(s)	105, 501, 571
Bse3DI	GCAATG	1 cut(s)	386
Bse8I	GATNNNNATC	2 cut(s)	633, 896
BseBI	CCWGG	2 cut(s)	191, 420
BseDI	CCNNGG	3 cut(s)	419, 495, 904
BseGI	GGATG	1 cut(s)	344
BseJI	GATNNNNATC	2 cut(s)	633, 896
BseLI	CCNNNNNNNGG	3 cut(s)	229, 377, 868
BseMI	GCAATG	1 cut(s)	386
BseMII	CTCAG	2 cut(s)	504, 735
BseNI	ACTGG	3 cut(s)	105, 501, 571
BseXI	GCAGC	3 cut(s)	28, 77, 440
BseYI	CCCAGC	1 cut(s)	377
Bsh1236I	CGCG	2 cut(s)	455, 497
BshFI	GGCC	4 cut(s)	104, 189, 500, 533
BsiHKCI	CYCGRG	1 cut(s)	662
BsiSI	CCGG	1 cut(s)	186
BslI	CCNNNNNNNGG	3 cut(s)	229, 377, 868
BsmAI	GTCTC	3 cut(s)	100, 134, 706
BsmBI	CGTCTC	2 cut(s)	100, 134
BsnI	GGCC	4 cut(s)	104, 189, 500, 533
Bso31I	GGTCTC	1 cut(s)	706
BsoBI	CYCGRG	1 cut(s)	662
Bsp143I	GATC	6 cut(s)	73, 303, 450, 777, 826, 891
Bsp19I	CCATGG	1 cut(s)	904
BspACI	CCGC	3 cut(s)	455, 495, 497
BspANI	GGCC	4 cut(s)	104, 189, 500, 533
BspCNI	CTCAG	2 cut(s)	503, 736
BspFNI	CGCG	2 cut(s)	455, 497
BspLI	GGNNCC	2 cut(s)	369, 459
BspMI	ACCTGC	1 cut(s)	177
BspTNI	GGTCTC	1 cut(s)	706
BsrDI	GCAATG	1 cut(s)	386
BsrFI	RCCGGY	1 cut(s)	185
BsrI	ACTGG	3 cut(s)	105, 501, 571
BssAI	RCCGGY	1 cut(s)	185
BssECI	CCNNGG	3 cut(s)	419, 495, 904
BssMI	GATC	6 cut(s)	73, 303, 450, 777, 826, 891
BssT1I	CCWWGG	1 cut(s)	904
Bst2UI	CCWGG	2 cut(s)	191, 420
Bst4CI	ACNGT	3 cut(s)	13, 335, 942
Bst6I	CTCTTC	1 cut(s)	250
BstC8I	GCNNGC	1 cut(s)	693
BstDEI	CTNAG	4 cut(s)	490, 744, 888, 931
BstDSI	CCRYGG	2 cut(s)	495, 904
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	344
BstFNI	CGCG	2 cut(s)	455, 497
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	6 cut(s)	76, 306, 453, 780, 829, 894
BstMAI	GTCTC	3 cut(s)	100, 134, 706
BstMBI	GATC	6 cut(s)	73, 303, 450, 777, 826, 891
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 503
BstNI	CCWGG	2 cut(s)	191, 420
BstNSI	RCATGY	2 cut(s)	131, 695
BstSCI	CCNGG	2 cut(s)	189, 418
BstSFI	CTRYAG	1 cut(s)	9
BstUI	CGCG	2 cut(s)	455, 497
BstV1I	GCAGC	3 cut(s)	28, 77, 440
BsuI	GTATCC	2 cut(s)	163, 408
BsuRI	GGCC	4 cut(s)	104, 189, 500, 533
BtgI	CCRYGG	2 cut(s)	495, 904
BtsCI	GGATG	1 cut(s)	344
BtsIMutI	CAGTG	4 cut(s)	98, 508, 564, 938
BveI	ACCTGC	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	693
CfoI	GCGC	1 cut(s)	214
Cfr10I	RCCGGY	1 cut(s)	185
Cfr13I	GGNCC	2 cut(s)	50, 103
Cfr42I	CCGCGG	1 cut(s)	498
CseI	GACGC	2 cut(s)	82, 151
Csp6I	GTAC	3 cut(s)	34, 331, 805
CspCI	CAANNNNNGTGG	4 cut(s)	304, 339, 631, 666
CviAII	CATG	6 cut(s)	128, 680, 692, 715, 808, 905
CviQI	GTAC	3 cut(s)	34, 331, 805
DdeI	CTNAG	4 cut(s)	490, 744, 888, 931
DpnI	GATC	6 cut(s)	75, 305, 452, 779, 828, 893
DpnII	GATC	6 cut(s)	73, 303, 450, 777, 826, 891
DraIII	CACNNNGTG	1 cut(s)	248
EaeI	YGGCCR	2 cut(s)	498, 531
Eam1104I	CTCTTC	1 cut(s)	250
EarI	CTCTTC	1 cut(s)	250
Eco130I	CCWWGG	1 cut(s)	904
Eco31I	GGTCTC	1 cut(s)	706
Eco32I	GATATC	1 cut(s)	720
Eco47I	GGWCC	1 cut(s)	50
Eco57I	CTGAAG	2 cut(s)	54, 75
Eco88I	CYCGRG	1 cut(s)	662
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoRII	CCWGG	2 cut(s)	189, 418
EcoRV	GATATC	1 cut(s)	720
EcoT14I	CCWWGG	1 cut(s)	904
ErhI	CCWWGG	1 cut(s)	904
Esp3I	CGTCTC	2 cut(s)	100, 134
FaeI	CATG	6 cut(s)	131, 683, 695, 718, 811, 908
FatI	CATG	6 cut(s)	127, 679, 691, 714, 807, 904
Fnu4HI	GCNGC	5 cut(s)	42, 91, 429, 495, 498
FokI	GGATG	1 cut(s)	331
Fsp4HI	GCNGC	5 cut(s)	42, 91, 429, 495, 498
FspI	TGCGCA	1 cut(s)	213
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	5 cut(s)	42, 91, 429, 495, 498
GsaI	CCCAGC	1 cut(s)	381
HaeIII	GGCC	4 cut(s)	104, 189, 500, 533
HapII	CCGG	1 cut(s)	186
HgaI	GACGC	2 cut(s)	82, 151
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	6 cut(s)	131, 683, 695, 718, 811, 908
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HincII	GTYRAC	1 cut(s)	685
HindII	GTYRAC	1 cut(s)	685
HinfI	GANTC	2 cut(s)	382, 763
HpaII	CCGG	1 cut(s)	186
HphI	GGTGA	3 cut(s)	299, 305, 460
Hpy166II	GTNNAC	3 cut(s)	604, 685, 945
Hpy188I	TCNGA	2 cut(s)	73, 81
Hpy188III	TCNNGA	2 cut(s)	53, 638
Hpy8I	GTNNAC	3 cut(s)	604, 685, 945
HpyAV	CCTTC	5 cut(s)	50, 191, 284, 321, 866
HpyCH4III	ACNGT	3 cut(s)	13, 335, 942
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	5 cut(s)	113, 521, 695, 799, 845
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 503
HpyF3I	CTNAG	4 cut(s)	490, 744, 888, 931
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	6 cut(s)	131, 683, 695, 718, 811, 908
HspAI	GCGC	1 cut(s)	212
KspI	CCGCGG	1 cut(s)	498
Kzo9I	GATC	6 cut(s)	73, 303, 450, 777, 826, 891
LmnI	GCTCC	1 cut(s)	457
Lsp1109I	GCAGC	3 cut(s)	28, 77, 440
LweI	GCATC	2 cut(s)	100, 786
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	3 cut(s)	278, 293, 936
MalI	GATC	6 cut(s)	75, 305, 452, 779, 828, 893
MboI	GATC	6 cut(s)	73, 303, 450, 777, 826, 891
MboII	GAAGA	3 cut(s)	206, 267, 805
MlsI	TGGCCA	1 cut(s)	533
MluCI	AATT	8 cut(s)	84, 261, 352, 589, 597, 624, 909, 916
MluNI	TGGCCA	1 cut(s)	533
MmeI	TCCRAC	3 cut(s)	89, 232, 538
MnlI	CCTC	6 cut(s)	223, 439, 658, 741, 745, 753
Mox20I	TGGCCA	1 cut(s)	533
MroXI	GAANNNNTTC	2 cut(s)	60, 482
MscI	TGGCCA	1 cut(s)	533
MseI	TTAA	2 cut(s)	225, 356
Msp20I	TGGCCA	1 cut(s)	533
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	1 cut(s)	186
MspR9I	CCNGG	2 cut(s)	191, 420
MvaI	CCWGG	2 cut(s)	191, 420
MvnI	CGCG	2 cut(s)	455, 497
MwoI	GCNNNNNNNGC	2 cut(s)	110, 503
NcoI	CCATGG	1 cut(s)	904
NdeII	GATC	6 cut(s)	73, 303, 450, 777, 826, 891
NlaIII	CATG	6 cut(s)	131, 683, 695, 718, 811, 908
NlaIV	GGNNCC	2 cut(s)	369, 459
NmeAIII	GCCGAG	1 cut(s)	352
NmuCI	GTSAC	3 cut(s)	278, 293, 936
NsbI	TGCGCA	1 cut(s)	213
NspI	RCATGY	2 cut(s)	131, 695
PaeI	GCATGC	1 cut(s)	695
PaeR7I	CTCGAG	1 cut(s)	662
PciI	ACATGT	1 cut(s)	127
PdmI	GAANNNNTTC	2 cut(s)	60, 482
PfeI	GAWTC	2 cut(s)	382, 763
PflMI	CCANNNNNTGG	1 cut(s)	377
PkrI	GCNGC	5 cut(s)	43, 92, 430, 496, 499
PscI	ACATGT	1 cut(s)	127
Psp6I	CCWGG	2 cut(s)	189, 418
PspFI	CCCAGC	1 cut(s)	377
PspGI	CCWGG	2 cut(s)	189, 418
PspN4I	GGNNCC	2 cut(s)	369, 459
PspPI	GGNCC	2 cut(s)	50, 103
PspXI	VCTCGAGB	1 cut(s)	662
RsaI	GTAC	3 cut(s)	35, 332, 806
RsaNI	GTAC	3 cut(s)	34, 331, 805
SacII	CCGCGG	1 cut(s)	498
SaqAI	TTAA	2 cut(s)	225, 356
SatI	GCNGC	5 cut(s)	42, 91, 429, 495, 498
Sau3AI	GATC	6 cut(s)	73, 303, 450, 777, 826, 891
Sau96I	GGNCC	2 cut(s)	50, 103
ScaI	AGTACT	1 cut(s)	332
ScrFI	CCNGG	2 cut(s)	191, 420
SfaNI	GCATC	2 cut(s)	100, 786
SfcI	CTRYAG	1 cut(s)	9
Sfr274I	CTCGAG	1 cut(s)	662
Sfr303I	CCGCGG	1 cut(s)	498
SgrBI	CCGCGG	1 cut(s)	498
SinI	GGWCC	1 cut(s)	50
SlaI	CTCGAG	1 cut(s)	662
SmlI	CTYRAG	2 cut(s)	137, 662
SmoI	CTYRAG	2 cut(s)	137, 662
SphI	GCATGC	1 cut(s)	695
Sse9I	AATT	8 cut(s)	84, 261, 352, 589, 597, 624, 909, 916
SsiI	CCGC	3 cut(s)	455, 495, 497
SspI	AATATT	1 cut(s)	958
StyD4I	CCNGG	2 cut(s)	189, 418
StyI	CCWWGG	1 cut(s)	904
TaaI	ACNGT	3 cut(s)	13, 335, 942
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	3 cut(s)	18, 476, 663
TasI	AATT	8 cut(s)	84, 261, 352, 589, 597, 624, 909, 916
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	2 cut(s)	497, 500
TfiI	GAWTC	2 cut(s)	382, 763
Tru1I	TTAA	2 cut(s)	225, 356
Tru9I	TTAA	2 cut(s)	225, 356
TscAI	CASTG	4 cut(s)	105, 508, 571, 945
TseFI	GTSAC	3 cut(s)	278, 293, 936
TseI	GCWGC	3 cut(s)	41, 90, 428
Tsp45I	GTSAC	3 cut(s)	278, 293, 936
TspDTI	ATGAA	2 cut(s)	475, 807
TspGWI	ACGGA	1 cut(s)	145
TspRI	CASTG	4 cut(s)	105, 508, 571, 945
Van91I	CCANNNNNTGG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	50
XagI	CCTNNNNNAGG	1 cut(s)	227
XapI	RAATTY	3 cut(s)	84, 352, 916
XceI	RCATGY	2 cut(s)	131, 695
XhoI	CTCGAG	1 cut(s)	662
XmnI	GAANNNNTTC	2 cut(s)	60, 482
ZrmI	AGTACT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.