Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003278

Physical Location & Seq

Genomic Coordinates Reverse (-)

60565224 .. 60589064

Gene Structure 23841 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0474500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGCAGTCAACCTCATCACCTCCGCTGCCCAAATGCCCTTACGCTCTCCCCAACCCTTCTCATCACTTCTTCCACCAGCCCTCCAAAAACCCTAACACCCTCTCCCTTCCCCAAAAGCCCCAAACCCACTTCACCACCCACTGTGCCCTCTCCATATCCCACACCAACAGTTGCAGCAGAGACCACCCAGTAAACCAGAACCACAAACGCAGCCACCGGAGCACCGATTCCGACCCATATCACTACGACGCACTCTTCCTCCAATTCAACTCCTCCGGCGACACCAGCACCAGCAACGACGAAGGCCCGGAAAGCCCATTTGAAGATCAAGGCGAAGTTCACAGGGGAGTTTCGTCGAACATGTGGTGGGCAGACTTGAAAGCCGCATTGGGGCAGAGACTGAACTTTGGGGCCATAATGTTTTCGGCTAGGGTGCTCGCCAAAGACCAGCACTTGGCTCTGCCTCACGTTTCGGTGCCTGATATAAGGCACATTGATTGGGTTGAGCTTCACAGGAGGGGCTTCAAGGGCGTTGTGTTTGATAAGGACAACACTCTCACTGTGCCTTACTCTTTGACGCTTTGGGGTCCTCTTGGGTCCTCATTGGAGCAATGTAAATCAGTTTTCGGGCCAGATATTGCGGTCTTCAGTAACTCCGCTGGGCTGAATGAATATGACCATGATGGTTCGAAAGCTAGGGAGCTTGAAGGGGCTATTGGAATTAAAGTCATAAGGCATAGAGTGAAGAAACCGGCTGGGACAGCTGAAGAGATCGAGAAGCATTTTGGTTGTAAGTCGTCGCATCTTATTATGGTGGGTGATCGACCCTTGACTGATATTGTCTATGGGAATCAAAATGGCTTTCTAACTATCTTAACTGGACCTTTGAGTCTTACTGAGGAGCCATTCATTGTCAGGCAGGTGAGGAAACTAGAAACAGCCCTTGTGAATAGTTGGTCTAGGAAGGGGTTAAAACCCATGAGTCATAGGTTGTTGCCAGATGGCATGCAGTGTGTGAAACATCCACCACCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

345

Amino Acids

38.42

Weight (kDa)

8.19

Isoelectric Point (pI)

39.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGP_phosphatase	PF09419	143 - 295	1.7e-42	Mitochondrial PGP phosphatase
Hydrolase_like	PF13242	251 - 293	3.2e-06	HAD-hyrolase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43081 FvH4_6g43100 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110
malus_domestica	MD09G1109600.v1.1 MD09G1109700.v1.1 MD09G1109800.v1.1
prunus_persica	Prupe.3G216700_v2.0.a1 Prupe.3G216700_v2.0.a1
pyrus_communis	pycom09g03220 pycom09g03230
rosa_chinensis	RchiOBHm_Chr2g0159121 RchiOBHm_Chr2g0159131
rosa_laevigata	RLG00000021139 RLG00000021140
rosa_multiflora	Rmu_co8162966.1_g000001 Rmu_co8366625.1_g000001 Rmu_sc0004528.1_g000013 Rmu_sc0013510.1_g000003 Rmu_sc0013510.1_g000004 Rmu_sc0015794.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090750 Rroxscaffold_2G00090760
rosa_rugosa	Rorug02G0474200 Rorug02G0474500 Rorug02G0474500
rosa_samantha	Rh2AG541000 Rh2AG541200 Rh2BG553900 Rh2BG554000 Rh2CG524000 Rh2DG563500
rosa_wichuraiana	Rw2G044760 Rw2G044770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	910
AasI	GACNNNNNNGTC	1 cut(s)	888
Acc36I	ACCTGC	1 cut(s)	910
AccB1I	GGYRCC	1 cut(s)	475
AccB7I	CCANNNNNTGG	1 cut(s)	454
AciI	CCGC	4 cut(s)	23, 384, 641, 657
AcuI	CTGAAG	2 cut(s)	631, 786
AfiI	CCNNNNNNNGG	2 cut(s)	390, 454
AflIII	ACRYGT	1 cut(s)	360
AgsI	TTSAA	5 cut(s)	268, 323, 379, 526, 707
AjuI	GAANNNNNNNTTGG	4 cut(s)	371, 403, 699, 731
AluBI	AGCT	4 cut(s)	508, 695, 703, 764
AluI	AGCT	4 cut(s)	508, 695, 703, 764
Alw21I	GWGCWC	2 cut(s)	224, 438
Alw26I	GTCTC	2 cut(s)	174, 391
AlwNI	CAGNNNCTG	1 cut(s)	400
AoxI	GGCC	3 cut(s)	304, 411, 629
ApeKI	GCWGC	3 cut(s)	25, 174, 210
AspS9I	GGNCC	6 cut(s)	305, 411, 587, 597, 629, 881
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	4 cut(s)	9, 124, 830, 934
AsuII	TTCGAA	1 cut(s)	689
AvaII	GGWCC	3 cut(s)	587, 597, 881
BaeGI	GKGCMC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	475
BbsI	GAAGAC	1 cut(s)	637
Bbv12I	GWGCWC	2 cut(s)	224, 438
BbvI	GCAGC	3 cut(s)	12, 186, 222
BccI	CCATC	2 cut(s)	677, 995
BcnI	CCSGG	1 cut(s)	308
BcoDI	GTCTC	2 cut(s)	174, 391
BfaI	CTAG	4 cut(s)	429, 696, 932, 960
BfuAI	ACCTGC	1 cut(s)	910
BisI	GCNGC	4 cut(s)	26, 175, 211, 384
BlsI	GCNGC	4 cut(s)	27, 176, 212, 385
Bme1390I	CCNGG	1 cut(s)	308
Bme18I	GGWCC	3 cut(s)	587, 597, 881
BmgT120I	GGNCC	6 cut(s)	305, 411, 587, 597, 629, 881
BmiI	GGNNCC	5 cut(s)	412, 477, 588, 598, 903
BmrFI	CCNGG	1 cut(s)	308
BmrI	ACTGGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	811
BmuI	ACTGGG	1 cut(s)	182
BpiI	GAAGAC	1 cut(s)	637
Bpu14I	TTCGAA	1 cut(s)	689
BpuMI	CCSGG	1 cut(s)	308
BsaI	GGTCTC	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	216
BsaXI	ACNNNNNCTCC	6 cut(s)	65, 86, 95, 116, 243, 273
Bsc4I	CCNNNNNNNGG	2 cut(s)	390, 454
Bse118I	RCCGGY	1 cut(s)	751
Bse1I	ACTGG	2 cut(s)	188, 883
Bse3DI	GCAATG	1 cut(s)	617
BseGI	GGATG	1 cut(s)	1021
BseLI	CCNNNNNNNGG	2 cut(s)	390, 454
BseMI	GCAATG	1 cut(s)	617
BseMII	CTCAG	1 cut(s)	888
BseNI	ACTGG	2 cut(s)	188, 883
BseRI	GAGGAG	2 cut(s)	262, 914
BseSI	GKGCMC	1 cut(s)	148
BseXI	GCAGC	3 cut(s)	12, 186, 222
BseYI	CCCAGC	2 cut(s)	659, 755
BshFI	GGCC	3 cut(s)	306, 413, 631
BshNI	GGYRCC	1 cut(s)	475
BsiHKAI	GWGCWC	2 cut(s)	224, 438
BsiSI	CCGG	4 cut(s)	217, 276, 308, 752
BslFI	GGGAC	1 cut(s)	772
BslI	CCNNNNNNNGG	2 cut(s)	390, 454
BsmAI	GTCTC	2 cut(s)	174, 391
BsmFI	GGGAC	1 cut(s)	772
BsnI	GGCC	3 cut(s)	306, 413, 631
Bso31I	GGTCTC	1 cut(s)	174
Bsp119I	TTCGAA	1 cut(s)	689
Bsp1286I	GDGCHC	3 cut(s)	148, 224, 438
Bsp143I	GATC	3 cut(s)	325, 771, 820
BspACI	CCGC	4 cut(s)	23, 384, 641, 657
BspANI	GGCC	3 cut(s)	306, 413, 631
BspCNI	CTCAG	1 cut(s)	889
BspLI	GGNNCC	5 cut(s)	412, 477, 588, 598, 903
BspMI	ACCTGC	1 cut(s)	910
BspT104I	TTCGAA	1 cut(s)	689
BspT107I	GGYRCC	1 cut(s)	475
BspTNI	GGTCTC	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	617
BsrFI	RCCGGY	1 cut(s)	751
BsrI	ACTGG	2 cut(s)	188, 883
BssAI	RCCGGY	1 cut(s)	751
BssMI	GATC	3 cut(s)	325, 771, 820
Bst4CI	ACNGT	3 cut(s)	143, 170, 562
Bst6I	CTCTTC	2 cut(s)	260, 762
BstBI	TTCGAA	1 cut(s)	689
BstC8I	GCNNGC	2 cut(s)	438, 1007
BstDEI	CTNAG	1 cut(s)	897
BstF5I	GGATG	1 cut(s)	1021
BstKTI	GATC	3 cut(s)	328, 774, 823
BstMAI	GTCTC	2 cut(s)	174, 391
BstMBI	GATC	3 cut(s)	325, 771, 820
BstMWI	GCNNNNNNNGC	5 cut(s)	219, 285, 312, 528, 761
BstNSI	RCATGY	2 cut(s)	364, 1009
BstSCI	CCNGG	1 cut(s)	306
BstSLI	GKGCMC	1 cut(s)	148
BstV1I	GCAGC	3 cut(s)	12, 186, 222
BstV2I	GAAGAC	1 cut(s)	637
BsuRI	GGCC	3 cut(s)	306, 413, 631
BtsCI	GGATG	1 cut(s)	1021
BtsI	GCAGTG	1 cut(s)	1016
BtsIMutI	CAGTG	3 cut(s)	139, 558, 1016
BveI	ACCTGC	1 cut(s)	910
Cac8I	GCNNGC	2 cut(s)	438, 1007
CaiI	CAGNNNCTG	1 cut(s)	400
Cfr10I	RCCGGY	1 cut(s)	751
Cfr13I	GGNCC	6 cut(s)	305, 411, 587, 597, 629, 881
CseI	GACGC	2 cut(s)	257, 586
CviAII	CATG	4 cut(s)	361, 680, 979, 1006
DdeI	CTNAG	1 cut(s)	897
DpnI	GATC	3 cut(s)	327, 773, 822
DpnII	GATC	3 cut(s)	325, 771, 820
DrdI	GACNNNNNNGTC	1 cut(s)	888
DseDI	GACNNNNNNGTC	1 cut(s)	888
Eam1104I	CTCTTC	2 cut(s)	260, 762
EarI	CTCTTC	2 cut(s)	260, 762
Eco31I	GGTCTC	1 cut(s)	174
Eco47I	GGWCC	3 cut(s)	587, 597, 881
Eco57I	CTGAAG	2 cut(s)	631, 786
EcoO109I	RGGNCCY	2 cut(s)	587, 597
FaeI	CATG	4 cut(s)	364, 683, 982, 1009
FaqI	GGGAC	1 cut(s)	772
FatI	CATG	4 cut(s)	360, 679, 978, 1005
Fnu4HI	GCNGC	4 cut(s)	26, 175, 211, 384
FokI	GGATG	1 cut(s)	1008
Fsp4HI	GCNGC	4 cut(s)	26, 175, 211, 384
FspBI	CTAG	4 cut(s)	429, 696, 932, 960
GluI	GCNGC	4 cut(s)	26, 175, 211, 384
GsaI	CCCAGC	2 cut(s)	663, 759
HaeIII	GGCC	3 cut(s)	306, 413, 631
HapII	CCGG	4 cut(s)	217, 276, 308, 752
HgaI	GACGC	2 cut(s)	257, 586
Hin1II	CATG	4 cut(s)	364, 683, 982, 1009
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	4 cut(s)	227, 850, 889, 982
HpaII	CCGG	4 cut(s)	217, 276, 308, 752
HphI	GGTGA	4 cut(s)	9, 124, 830, 934
Hpy166II	GTNNAC	3 cut(s)	9, 193, 340
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	1 cut(s)	775
Hpy8I	GTNNAC	3 cut(s)	9, 193, 340
Hpy99I	CGWCG	4 cut(s)	251, 302, 358, 802
HpyAV	CCTTC	5 cut(s)	66, 116, 296, 701, 958
HpyCH4III	ACNGT	3 cut(s)	143, 170, 562
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	3 cut(s)	4, 174, 1009
HpyF10VI	GCNNNNNNNGC	5 cut(s)	219, 285, 312, 528, 761
HpyF3I	CTNAG	1 cut(s)	897
HpySE526I	ACGT	1 cut(s)	468
Hsp92II	CATG	4 cut(s)	364, 683, 982, 1009
Kzo9I	GATC	3 cut(s)	325, 771, 820
LmnI	GCTCC	4 cut(s)	219, 607, 700, 901
Lsp1109I	GCAGC	3 cut(s)	12, 186, 222
LweI	GCATC	1 cut(s)	811
MaeI	CTAG	4 cut(s)	429, 696, 932, 960
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	1 cut(s)	650
MalI	GATC	3 cut(s)	327, 773, 822
MboI	GATC	3 cut(s)	325, 771, 820
MboII	GAAGA	6 cut(s)	61, 247, 335, 637, 757, 779
MhlI	GDGCHC	3 cut(s)	148, 224, 438
MluCI	AATT	2 cut(s)	263, 720
MlyI	GAGTC	2 cut(s)	898, 991
MmeI	TCCRAC	1 cut(s)	255
MseI	TTAA	3 cut(s)	723, 875, 971
MspA1I	CMGCKG	3 cut(s)	25, 659, 764
MspI	CCGG	4 cut(s)	217, 276, 308, 752
MspR9I	CCNGG	1 cut(s)	308
MwoI	GCNNNNNNNGC	5 cut(s)	219, 285, 312, 528, 761
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	3 cut(s)	325, 771, 820
NlaIII	CATG	4 cut(s)	364, 683, 982, 1009
NlaIV	GGNNCC	5 cut(s)	412, 477, 588, 598, 903
NspI	RCATGY	2 cut(s)	364, 1009
NspV	TTCGAA	1 cut(s)	689
PaeI	GCATGC	1 cut(s)	1009
PaqCI	CACCTGC	1 cut(s)	910
PciI	ACATGT	1 cut(s)	360
PfeI	GAWTC	2 cut(s)	227, 850
PflMI	CCANNNNNTGG	1 cut(s)	454
PkrI	GCNGC	4 cut(s)	27, 176, 212, 385
PleI	GAGTC	2 cut(s)	897, 990
PpsI	GAGTC	2 cut(s)	897, 990
PpuMI	RGGWCCY	2 cut(s)	587, 597
PscI	ACATGT	1 cut(s)	360
Psp5II	RGGWCCY	2 cut(s)	587, 597
PspFI	CCCAGC	2 cut(s)	659, 755
PspN4I	GGNNCC	5 cut(s)	412, 477, 588, 598, 903
PspPI	GGNCC	6 cut(s)	305, 411, 587, 597, 629, 881
PspPPI	RGGWCCY	2 cut(s)	587, 597
PstNI	CAGNNNCTG	1 cut(s)	400
PvuII	CAGCTG	1 cut(s)	764
SaqAI	TTAA	3 cut(s)	723, 875, 971
SatI	GCNGC	4 cut(s)	26, 175, 211, 384
Sau3AI	GATC	3 cut(s)	325, 771, 820
Sau96I	GGNCC	6 cut(s)	305, 411, 587, 597, 629, 881
SchI	GAGTC	2 cut(s)	898, 991
ScrFI	CCNGG	1 cut(s)	308
SduI	GDGCHC	3 cut(s)	148, 224, 438
SfaNI	GCATC	1 cut(s)	811
SfuI	TTCGAA	1 cut(s)	689
SinI	GGWCC	3 cut(s)	587, 597, 881
SphI	GCATGC	1 cut(s)	1009
Sse9I	AATT	2 cut(s)	263, 720
SsiI	CCGC	4 cut(s)	23, 384, 641, 657
SspMI	CTAG	4 cut(s)	429, 696, 932, 960
StyD4I	CCNGG	1 cut(s)	306
TaaI	ACNGT	3 cut(s)	143, 170, 562
TaiI	ACGT	1 cut(s)	471
TaqI	TCGA	4 cut(s)	356, 689, 774, 823
TasI	AATT	2 cut(s)	263, 720
TauI	GCSGC	1 cut(s)	386
TfiI	GAWTC	2 cut(s)	227, 850
Tru1I	TTAA	3 cut(s)	723, 875, 971
Tru9I	TTAA	3 cut(s)	723, 875, 971
TscAI	CASTG	3 cut(s)	146, 565, 1016
TseI	GCWGC	3 cut(s)	25, 174, 210
TspDTI	ATGAA	2 cut(s)	684, 898
TspRI	CASTG	3 cut(s)	146, 565, 1016
Van91I	CCANNNNNTGG	1 cut(s)	454
VpaK11BI	GGWCC	3 cut(s)	587, 597, 881
XceI	RCATGY	2 cut(s)	364, 1009
XspI	CTAG	4 cut(s)	429, 696, 932, 960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.