Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004528.1

Orthogroup ID

OG0003278

Physical Location & Seq

Genomic Coordinates Forward (+)

73860 .. 76222

Gene Structure 2363 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004528.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgagtgagatcagtgaaaagatgaggagcgcagtagtggagagcagagagtggtacatggctgcttatgcacttgaaggtgttccgacctccgatcatctcaaactccgcacagtcaaaatctcccttgccctcgattcgatcccggaacaacatgttatcctcgagaccctgttcatctccctcgatccgtacttgcgaagcagaatgactggccgagaagacggcctctactctccccagtacaacctcaacgaggtggtggcagagccaataaaaccagggtcgaatgtgttcatttcagccgcggctggggcggttgggatgtatgcggggcagttggccaagctcaaaggctgtcgggtcgtcggaagcactggatccgacgagaaagtaaggctcataaaggaggaatttggatatgatgatgcattcaactatcacacggagacagattatgatgctgctctaagcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

159

Amino Acids

17.6

Weight (kDa)

5.09

Isoelectric Point (pI)

45.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43081 FvH4_6g43100 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110
malus_domestica	MD09G1109600.v1.1 MD09G1109700.v1.1 MD09G1109800.v1.1
prunus_persica	Prupe.3G216700_v2.0.a1 Prupe.3G216700_v2.0.a1
pyrus_communis	pycom09g03220 pycom09g03230
rosa_chinensis	RchiOBHm_Chr2g0159121 RchiOBHm_Chr2g0159131
rosa_laevigata	RLG00000021139 RLG00000021140
rosa_multiflora	Rmu_co8162966.1_g000001 Rmu_co8366625.1_g000001 Rmu_sc0004528.1_g000013 Rmu_sc0013510.1_g000003 Rmu_sc0013510.1_g000004 Rmu_sc0015794.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090750 Rroxscaffold_2G00090760
rosa_rugosa	Rorug02G0474200 Rorug02G0474500 Rorug02G0474500
rosa_samantha	Rh2AG541000 Rh2AG541200 Rh2BG553900 Rh2BG554000 Rh2CG524000 Rh2DG563500
rosa_wichuraiana	Rw2G044760 Rw2G044770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	308
AciI	CCGC	5 cut(s)	109, 306, 308, 317, 332
AclWI	GGATC	4 cut(s)	136, 182, 375, 388
AcoI	YGGCCR	2 cut(s)	214, 342
AcsI	RAATTY	1 cut(s)	413
AfaI	GTAC	3 cut(s)	56, 194, 245
AfiI	CCNNNNNNNGG	2 cut(s)	256, 312
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	77, 436
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	1 cut(s)	349
AluI	AGCT	1 cut(s)	349
Alw26I	GTCTC	2 cut(s)	161, 443
AlwI	GGATC	4 cut(s)	136, 182, 375, 388
Ama87I	CYCGRG	1 cut(s)	164
AoxI	GGCC	3 cut(s)	214, 226, 342
ApeKI	GCWGC	2 cut(s)	62, 464
ApoI	RAATTY	1 cut(s)	413
Asp700I	GAANNNNTTC	2 cut(s)	81, 293
AspLEI	GCGC	1 cut(s)	32
AsuC2I	CCSGG	1 cut(s)	146
AvaI	CYCGRG	1 cut(s)	164
BalI	TGGCCA	1 cut(s)	344
BamHI	GGATCC	1 cut(s)	380
BbsI	GAAGAC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	49, 451
BceAI	ACGGC	1 cut(s)	241
BciT130I	CCWGG	1 cut(s)	282
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	2 cut(s)	161, 443
BisI	GCNGC	4 cut(s)	63, 306, 309, 465
BlsI	GCNGC	4 cut(s)	64, 307, 310, 466
Bme1390I	CCNGG	2 cut(s)	146, 282
BmeT110I	CYCGRG	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	382
BmrFI	CCNGG	2 cut(s)	146, 282
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	2 cut(s)	418, 451
BmuI	ACTGGG	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	228
BpuMI	CCSGG	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	2 cut(s)	281, 306
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 312
Bse1I	ACTGG	3 cut(s)	217, 241, 382
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	281, 306
BseGI	GGATG	1 cut(s)	330
BseLI	CCNNNNNNNGG	2 cut(s)	256, 312
BseNI	ACTGG	3 cut(s)	217, 241, 382
BseRI	GAGGAG	1 cut(s)	40
BseXI	GCAGC	2 cut(s)	49, 451
BseYI	CCCAGC	1 cut(s)	311
Bsh1236I	CGCG	1 cut(s)	308
BshFI	GGCC	3 cut(s)	216, 228, 344
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	2 cut(s)	256, 312
BsmAI	GTCTC	2 cut(s)	161, 443
BsmI	GAATGC	1 cut(s)	431
BsnI	GGCC	3 cut(s)	216, 228, 344
Bso31I	GGTCTC	1 cut(s)	161
BsoBI	CYCGRG	1 cut(s)	164
Bsp143I	GATC	5 cut(s)	9, 94, 141, 187, 380
BspACI	CCGC	5 cut(s)	109, 306, 308, 317, 332
BspANI	GGCC	3 cut(s)	216, 228, 344
BspFNI	CGCG	1 cut(s)	308
BspLI	GGNNCC	1 cut(s)	382
BspPI	GGATC	4 cut(s)	136, 182, 375, 388
BspTNI	GGTCTC	1 cut(s)	161
BsrI	ACTGG	3 cut(s)	217, 241, 382
BssECI	CCNNGG	2 cut(s)	281, 306
BssMI	GATC	5 cut(s)	9, 94, 141, 187, 380
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	1 cut(s)	115
BstDEI	CTNAG	1 cut(s)	470
BstDSI	CCRYGG	1 cut(s)	306
BstENI	CCTNNNNNAGG	1 cut(s)	254
BstF5I	GGATG	1 cut(s)	330
BstFNI	CGCG	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	5 cut(s)	12, 97, 144, 190, 383
BstMAI	GTCTC	2 cut(s)	161, 443
BstMBI	GATC	5 cut(s)	9, 94, 141, 187, 380
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 314
BstNI	CCWGG	1 cut(s)	282
BstNSI	RCATGY	1 cut(s)	158
BstSCI	CCNGG	2 cut(s)	144, 280
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	2 cut(s)	49, 451
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	380
BstYI	RGATCY	1 cut(s)	380
BsuRI	GGCC	3 cut(s)	216, 228, 344
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	330
BtsIMutI	CAGTG	2 cut(s)	19, 375
CfoI	GCGC	1 cut(s)	32
Cfr42I	CCGCGG	1 cut(s)	309
Csp6I	GTAC	3 cut(s)	55, 193, 244
CviAII	CATG	2 cut(s)	58, 155
CviQI	GTAC	3 cut(s)	55, 193, 244
DdeI	CTNAG	1 cut(s)	470
DpnI	GATC	5 cut(s)	11, 96, 143, 189, 382
DpnII	GATC	5 cut(s)	9, 94, 141, 187, 380
EaeI	YGGCCR	2 cut(s)	214, 342
Eco31I	GGTCTC	1 cut(s)	161
Eco88I	CYCGRG	1 cut(s)	164
EcoNI	CCTNNNNNAGG	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	280
EcoT22I	ATGCAT	1 cut(s)	433
FaeI	CATG	2 cut(s)	61, 158
FaiI	YATR	7 cut(s)	59, 69, 156, 330, 404, 423, 459
FatI	CATG	2 cut(s)	57, 154
FauI	CCCGC	1 cut(s)	325
Fnu4HI	GCNGC	4 cut(s)	63, 306, 309, 465
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	4 cut(s)	63, 306, 309, 465
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	4 cut(s)	63, 306, 309, 465
GsaI	CCCAGC	1 cut(s)	315
HaeIII	GGCC	3 cut(s)	216, 228, 344
HapII	CCGG	1 cut(s)	146
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	2 cut(s)	61, 158
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HinfI	GANTC	1 cut(s)	137
HpaII	CCGG	1 cut(s)	146
Hpy188I	TCNGA	4 cut(s)	87, 94, 371, 385
Hpy188III	TCNNGA	1 cut(s)	166
Hpy99I	CGWCG	2 cut(s)	371, 389
HpyAV	CCTTC	1 cut(s)	71
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	2 cut(s)	71, 431
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 314
HpyF3I	CTNAG	1 cut(s)	470
Hsp92II	CATG	2 cut(s)	61, 158
HspAI	GCGC	1 cut(s)	30
KspI	CCGCGG	1 cut(s)	309
Kzo9I	GATC	5 cut(s)	9, 94, 141, 187, 380
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	8 cut(s)	159, 185, 198, 254, 267, 294, 297, 363
Lsp1109I	GCAGC	2 cut(s)	49, 451
LweI	GCATC	2 cut(s)	418, 451
MalI	GATC	5 cut(s)	11, 96, 143, 189, 382
MboI	GATC	5 cut(s)	9, 94, 141, 187, 380
MboII	GAAGA	1 cut(s)	233
MflI	RGATCY	1 cut(s)	380
MlsI	TGGCCA	1 cut(s)	344
MluCI	AATT	1 cut(s)	413
MluNI	TGGCCA	1 cut(s)	344
MmeI	TCCRAC	3 cut(s)	110, 349, 408
MnlI	CCTC	9 cut(s)	18, 100, 143, 173, 194, 239, 250, 260, 403
Mox20I	TGGCCA	1 cut(s)	344
Mph1103I	ATGCAT	1 cut(s)	433
MroXI	GAANNNNTTC	2 cut(s)	81, 293
MscI	TGGCCA	1 cut(s)	344
Msp20I	TGGCCA	1 cut(s)	344
MspA1I	CMGCKG	1 cut(s)	308
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	2 cut(s)	146, 282
Mva1269I	GAATGC	1 cut(s)	431
MvaI	CCWGG	1 cut(s)	282
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	68, 314
NciI	CCSGG	1 cut(s)	146
NdeII	GATC	5 cut(s)	9, 94, 141, 187, 380
NlaIII	CATG	2 cut(s)	61, 158
NlaIV	GGNNCC	1 cut(s)	382
NmeAIII	GCCGAG	1 cut(s)	242
NsiI	ATGCAT	1 cut(s)	433
NspI	RCATGY	1 cut(s)	158
PaeR7I	CTCGAG	1 cut(s)	164
PciI	ACATGT	1 cut(s)	154
PctI	GAATGC	1 cut(s)	431
PdmI	GAANNNNTTC	2 cut(s)	81, 293
PfeI	GAWTC	1 cut(s)	137
PfoI	TCCNGGA	1 cut(s)	144
PkrI	GCNGC	4 cut(s)	64, 307, 310, 466
PscI	ACATGT	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	280
PspFI	CCCAGC	1 cut(s)	311
PspGI	CCWGG	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	380
RsaI	GTAC	3 cut(s)	56, 194, 245
RsaNI	GTAC	3 cut(s)	55, 193, 244
SacII	CCGCGG	1 cut(s)	309
SatI	GCNGC	4 cut(s)	63, 306, 309, 465
Sau3AI	GATC	5 cut(s)	9, 94, 141, 187, 380
ScrFI	CCNGG	2 cut(s)	146, 282
SetI	ASST	5 cut(s)	82, 92, 252, 261, 351
SfaNI	GCATC	2 cut(s)	418, 451
Sfr274I	CTCGAG	1 cut(s)	164
Sfr303I	CCGCGG	1 cut(s)	309
SgrBI	CCGCGG	1 cut(s)	309
SlaI	CTCGAG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	413
SsiI	CCGC	5 cut(s)	109, 306, 308, 317, 332
StyD4I	CCNGG	2 cut(s)	144, 280
TaaI	ACNGT	1 cut(s)	115
TaqI	TCGA	5 cut(s)	135, 140, 165, 186, 287
TasI	AATT	1 cut(s)	413
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	2 cut(s)	308, 311
TfiI	GAWTC	1 cut(s)	137
TscAI	CASTG	2 cut(s)	19, 382
TseI	GCWGC	2 cut(s)	62, 464
TspDTI	ATGAA	2 cut(s)	166, 286
TspGWI	ACGGA	2 cut(s)	180, 461
TspRI	CASTG	2 cut(s)	19, 382
XagI	CCTNNNNNAGG	1 cut(s)	254
XapI	RAATTY	1 cut(s)	413
XceI	RCATGY	1 cut(s)	158
XhoI	CTCGAG	1 cut(s)	164
XmnI	GAANNNNTTC	2 cut(s)	81, 293
Zsp2I	ATGCAT	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.