Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0003278

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG541200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGAGTGAGATTAGTGAAAAGATGAGGAGCGCAGTAGTGGAGAGCAGAGAGTGGTACGTGGCTGCTTATGCACCTGAAGGTGTTCCGACCTCCGATCATCTCAAACTCCGCACAGTCAAAATCTCCCTTGCCCTCGATTCGATCCCGGAACAACATGTTATCCTCGAGACCCTGTTCATCTCCCTCGATCCGTACTTGCGAAGCAGAATGACTGGCCGAGAAGACGGCCTCTACTCTCCCCAGTACAACCTCAACGAGGTAGTTTCAGCATTTGGAGTTGGAAGGGTACTTCGGTCAAGGGATAGTAACTACGGGGAAGGTGACATAGTGATCAGTCCCTTCATCCCTGTTGCTGAATATTTTGTGCTCCCATCCCAAGCTTTAATAAGAAAGATTGATGCAGATGCTGGGATTCCATTGCCTGAATACATCAGTACGCTAGGAATACCCGGGTTTGCAGCGTGGGTGGGGATTCAGGTGGTGGCAAAGCCAATAAAACCAGGGTCGAATGTGTTCATTTCAGCCGCGGCTGGGGCAGTTGGGATGTATGCAGGGCAATTGGCCAAGCTCAAAGGATGTAGGGTCGTCGGAAGCACTGGATCCGACGAGAAAGTAAGGCTCATAAAGGAGGAATTTGGATATGATGATGCATTCAACTATCACACGGAGACAGATTATGATGCTGCTCTAAGCAAGTATTTCCCTAATGGAATTGATGTATACCTTGATAATGTTGGTGGTGAAATGCTTGAAGCTGTTCTCAACCACGTCAACCAACACGCAAAGATACCTCTTTGTGGCATGATATCTGGCTACAACAAGGTTTGGACTGAGAGAGAGGGAGTGAGGAATCTGCTAAATTTGATAGGAAAAGATGTGAAGATGCAAGGTTTCATGGTGGGTTCATACTTGGATCGTTTTGGGGATTTTGCAAAGGAGATGGAGAGCCACCTAAAGGAACGAAAAATTAATTCTAAGCTTAAAATCTATAATGGAATTGACAAGTTCTTGGAGAGCCTACGGTCACTCTTCACCAGCTCTAATATCGGAAAAGTGGTAATCCAAGTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ADH_N_2 ADH_zinc_N

Protein Analysis

357

Amino Acids

39.52

Weight (kDa)

6.13

Isoelectric Point (pI)

30.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N_2	PF16884	22 - 127	7.3e-16	N-terminal domain of oxidoreductase
ADH_zinc_N	PF00107	179 - 311	3.9e-22	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003278)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g43081 FvH4_6g43100 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110 FvH4_6g43110
malus_domestica	MD09G1109600.v1.1 MD09G1109700.v1.1 MD09G1109800.v1.1
prunus_persica	Prupe.3G216700_v2.0.a1 Prupe.3G216700_v2.0.a1
pyrus_communis	pycom09g03220 pycom09g03230
rosa_chinensis	RchiOBHm_Chr2g0159121 RchiOBHm_Chr2g0159131
rosa_laevigata	RLG00000021139 RLG00000021140
rosa_multiflora	Rmu_co8162966.1_g000001 Rmu_co8366625.1_g000001 Rmu_sc0004528.1_g000013 Rmu_sc0013510.1_g000003 Rmu_sc0013510.1_g000004 Rmu_sc0015794.1_g000001
rosa_roxburghii	Rroxscaffold_2G00090750 Rroxscaffold_2G00090760
rosa_rugosa	Rorug02G0474200 Rorug02G0474500 Rorug02G0474500
rosa_samantha	Rh2AG541000 Rh2AG541200 Rh2BG553900 Rh2BG554000 Rh2CG524000 Rh2DG563500
rosa_wichuraiana	Rw2G044760 Rw2G044770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	720
AccII	CGCG	1 cut(s)	527
AciI	CCGC	3 cut(s)	109, 525, 527
AclWI	GGATC	5 cut(s)	136, 182, 594, 607, 921
AcoI	YGGCCR	2 cut(s)	214, 561
AcsI	RAATTY	2 cut(s)	632, 859
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	5 cut(s)	56, 194, 245, 288, 436
AfiI	CCNNNNNNNGG	4 cut(s)	256, 531, 797, 955
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	655, 752
AjiI	CACGTC	1 cut(s)	769
AjnI	CCWGG	1 cut(s)	499
AluBI	AGCT	5 cut(s)	380, 568, 755, 979, 1038
AluI	AGCT	5 cut(s)	380, 568, 755, 979, 1038
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	2 cut(s)	161, 662
AlwI	GGATC	5 cut(s)	136, 182, 594, 607, 921
AlwNI	CAGNNNCTG	1 cut(s)	407
Ama87I	CYCGRG	2 cut(s)	164, 449
AoxI	GGCC	3 cut(s)	214, 226, 561
ApeKI	GCWGC	3 cut(s)	62, 458, 683
ApoI	RAATTY	2 cut(s)	632, 859
AseI	ATTAAT	1 cut(s)	969
Asp700I	GAANNNNTTC	3 cut(s)	81, 512, 756
AspLEI	GCGC	1 cut(s)	32
AsuC2I	CCSGG	3 cut(s)	146, 450, 451
AsuHPI	GGTGA	3 cut(s)	332, 752, 1024
AvaI	CYCGRG	2 cut(s)	164, 449
BaeI	ACNNNNGTAYC	2 cut(s)	278, 311
BalI	TGGCCA	1 cut(s)	563
BamHI	GGATCC	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	3 cut(s)	49, 470, 670
BccI	CCATC	2 cut(s)	379, 934
BceAI	ACGGC	1 cut(s)	241
BciT130I	CCWGG	1 cut(s)	501
BclI	TGATCA	1 cut(s)	330
BcnI	CCSGG	3 cut(s)	146, 450, 451
BcoDI	GTCTC	2 cut(s)	161, 662
BfaI	CTAG	1 cut(s)	440
BisI	GCNGC	5 cut(s)	63, 459, 525, 528, 684
BlsI	GCNGC	5 cut(s)	64, 460, 526, 529, 685
Bme1390I	CCNGG	4 cut(s)	146, 450, 451, 501
BmeT110I	CYCGRG	2 cut(s)	164, 449
BmgBI	CACGTC	1 cut(s)	769
BmiI	GGNNCC	1 cut(s)	601
BmrFI	CCNGG	4 cut(s)	146, 450, 451, 501
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	5 cut(s)	388, 394, 637, 670, 873
BmuI	ACTGGG	1 cut(s)	235
BpiI	GAAGAC	1 cut(s)	228
BpuMI	CCSGG	3 cut(s)	146, 450, 451
BsaAI	YACGTR	1 cut(s)	58
BsaI	GGTCTC	1 cut(s)	161
BsaJI	CCNNGG	3 cut(s)	449, 500, 525
Bsc4I	CCNNNNNNNGG	4 cut(s)	256, 531, 797, 955
Bse1I	ACTGG	3 cut(s)	217, 241, 601
Bse3DI	GCAATG	1 cut(s)	416
BseBI	CCWGG	1 cut(s)	501
BseDI	CCNNGG	3 cut(s)	449, 500, 525
BseGI	GGATG	4 cut(s)	342, 371, 549, 581
BseLI	CCNNNNNNNGG	4 cut(s)	256, 531, 797, 955
BseMI	GCAATG	1 cut(s)	416
BseMII	CTCAG	1 cut(s)	822
BseNI	ACTGG	3 cut(s)	217, 241, 601
BseRI	GAGGAG	1 cut(s)	40
BseXI	GCAGC	3 cut(s)	49, 470, 670
BseYI	CCCAGC	2 cut(s)	407, 530
Bsh1236I	CGCG	1 cut(s)	527
BshFI	GGCC	3 cut(s)	216, 228, 563
BsiHKAI	GWGCWC	1 cut(s)	369
BsiHKCI	CYCGRG	2 cut(s)	164, 449
BsiSI	CCGG	2 cut(s)	146, 450
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	4 cut(s)	256, 531, 797, 955
BsmAI	GTCTC	2 cut(s)	161, 662
BsmFI	GGGAC	1 cut(s)	321
BsmI	GAATGC	1 cut(s)	650
BsnI	GGCC	3 cut(s)	216, 228, 563
Bso31I	GGTCTC	1 cut(s)	161
BsoBI	CYCGRG	2 cut(s)	164, 449
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	6 cut(s)	94, 141, 187, 330, 599, 913
BspACI	CCGC	3 cut(s)	109, 525, 527
BspANI	GGCC	3 cut(s)	216, 228, 563
BspCNI	CTCAG	1 cut(s)	823
BspFNI	CGCG	1 cut(s)	527
BspLI	GGNNCC	1 cut(s)	601
BspPI	GGATC	5 cut(s)	136, 182, 594, 607, 921
BspTNI	GGTCTC	1 cut(s)	161
BsrDI	GCAATG	1 cut(s)	416
BsrI	ACTGG	3 cut(s)	217, 241, 601
BssECI	CCNNGG	3 cut(s)	449, 500, 525
BssMI	GATC	6 cut(s)	94, 141, 187, 330, 599, 913
BssNAI	GTATAC	1 cut(s)	721
Bst1107I	GTATAC	1 cut(s)	721
Bst2UI	CCWGG	1 cut(s)	501
Bst4CI	ACNGT	2 cut(s)	115, 1023
Bst6I	CTCTTC	1 cut(s)	1034
BstBAI	YACGTR	1 cut(s)	58
BstDEI	CTNAG	3 cut(s)	689, 831, 975
BstDSI	CCRYGG	1 cut(s)	525
BstENI	CCTNNNNNAGG	1 cut(s)	254
BstF5I	GGATG	4 cut(s)	342, 371, 549, 581
BstFNI	CGCG	1 cut(s)	527
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	6 cut(s)	97, 144, 190, 333, 602, 916
BstMAI	GTCTC	2 cut(s)	161, 662
BstMBI	GATC	6 cut(s)	94, 141, 187, 330, 599, 913
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 533
BstNI	CCWGG	1 cut(s)	501
BstNSI	RCATGY	1 cut(s)	158
BstSCI	CCNGG	4 cut(s)	144, 448, 449, 499
BstUI	CGCG	1 cut(s)	527
BstV1I	GCAGC	3 cut(s)	49, 470, 670
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	599
BstYI	RGATCY	1 cut(s)	599
BstZ17I	GTATAC	1 cut(s)	721
BsuRI	GGCC	3 cut(s)	216, 228, 563
BtgI	CCRYGG	1 cut(s)	525
BtrI	CACGTC	1 cut(s)	769
BtsCI	GGATG	4 cut(s)	342, 371, 549, 581
BtsIMutI	CAGTG	1 cut(s)	594
CaiI	CAGNNNCTG	1 cut(s)	407
CfoI	GCGC	1 cut(s)	32
Cfr42I	CCGCGG	1 cut(s)	528
Cfr9I	CCCGGG	1 cut(s)	449
Csp6I	GTAC	5 cut(s)	55, 193, 244, 287, 435
CviAII	CATG	3 cut(s)	155, 802, 895
CviQI	GTAC	5 cut(s)	55, 193, 244, 287, 435
DdeI	CTNAG	3 cut(s)	689, 831, 975
DpnI	GATC	6 cut(s)	96, 143, 189, 332, 601, 915
DpnII	GATC	6 cut(s)	94, 141, 187, 330, 599, 913
EaeI	YGGCCR	2 cut(s)	214, 561
Eam1104I	CTCTTC	1 cut(s)	1034
EarI	CTCTTC	1 cut(s)	1034
Eco31I	GGTCTC	1 cut(s)	161
Eco32I	GATATC	1 cut(s)	807
Eco57I	CTGAAG	1 cut(s)	96
Eco88I	CYCGRG	2 cut(s)	164, 449
EcoNI	CCTNNNNNAGG	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	499
EcoRV	GATATC	1 cut(s)	807
EcoT22I	ATGCAT	1 cut(s)	652
FaeI	CATG	3 cut(s)	158, 805, 898
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	3 cut(s)	154, 801, 894
FbaI	TGATCA	1 cut(s)	330
FblI	GTMKAC	1 cut(s)	720
Fnu4HI	GCNGC	5 cut(s)	63, 459, 525, 528, 684
FokI	GGATG	4 cut(s)	329, 358, 556, 588
Fsp4HI	GCNGC	5 cut(s)	63, 459, 525, 528, 684
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	5 cut(s)	63, 459, 525, 528, 684
GsaI	CCCAGC	2 cut(s)	411, 534
HaeIII	GGCC	3 cut(s)	216, 228, 563
HapII	CCGG	2 cut(s)	146, 450
HhaI	GCGC	1 cut(s)	32
Hin1II	CATG	3 cut(s)	158, 805, 898
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HindIII	AAGCTT	2 cut(s)	378, 977
HinfI	GANTC	4 cut(s)	137, 412, 472, 850
HpaII	CCGG	2 cut(s)	146, 450
HphI	GGTGA	3 cut(s)	332, 752, 1024
Hpy166II	GTNNAC	2 cut(s)	721, 772
Hpy188I	TCNGA	5 cut(s)	87, 94, 590, 604, 1049
Hpy188III	TCNNGA	1 cut(s)	166
Hpy8I	GTNNAC	2 cut(s)	721, 772
Hpy99I	CGWCG	2 cut(s)	590, 608
HpyAV	CCTTC	4 cut(s)	71, 276, 311, 349
HpyCH4III	ACNGT	2 cut(s)	115, 1023
HpyCH4IV	ACGT	2 cut(s)	57, 768
HpyCH4V	TGCA	7 cut(s)	71, 401, 458, 551, 650, 886, 932
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 533
HpyF3I	CTNAG	3 cut(s)	689, 831, 975
HpySE526I	ACGT	2 cut(s)	57, 768
Hsp92II	CATG	3 cut(s)	158, 805, 898
HspAI	GCGC	1 cut(s)	30
Ksp22I	TGATCA	1 cut(s)	330
KspI	CCGCGG	1 cut(s)	528
Kzo9I	GATC	6 cut(s)	94, 141, 187, 330, 599, 913
LmnI	GCTCC	2 cut(s)	27, 372
Lsp1109I	GCAGC	3 cut(s)	49, 470, 670
LweI	GCATC	5 cut(s)	388, 394, 637, 670, 873
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	2 cut(s)	57, 768
MaeIII	GTNAC	3 cut(s)	305, 320, 1023
MalI	GATC	6 cut(s)	96, 143, 189, 332, 601, 915
MboI	GATC	6 cut(s)	94, 141, 187, 330, 599, 913
MboII	GAAGA	3 cut(s)	233, 892, 1021
MfeI	CAATTG	1 cut(s)	557
MflI	RGATCY	1 cut(s)	599
MhlI	GDGCHC	1 cut(s)	369
MlsI	TGGCCA	1 cut(s)	563
MluCI	AATT	7 cut(s)	557, 632, 711, 859, 966, 970, 996
MluNI	TGGCCA	1 cut(s)	563
MmeI	TCCRAC	4 cut(s)	110, 259, 568, 627
Mox20I	TGGCCA	1 cut(s)	563
Mph1103I	ATGCAT	1 cut(s)	652
MroXI	GAANNNNTTC	3 cut(s)	81, 512, 756
MscI	TGGCCA	1 cut(s)	563
MseI	TTAA	3 cut(s)	383, 969, 981
Msp20I	TGGCCA	1 cut(s)	563
MspA1I	CMGCKG	1 cut(s)	527
MspI	CCGG	2 cut(s)	146, 450
MspR9I	CCNGG	4 cut(s)	146, 450, 451, 501
MunI	CAATTG	1 cut(s)	557
Mva1269I	GAATGC	1 cut(s)	650
MvaI	CCWGG	1 cut(s)	501
MvnI	CGCG	1 cut(s)	527
MwoI	GCNNNNNNNGC	2 cut(s)	68, 533
NciI	CCSGG	3 cut(s)	146, 450, 451
NdeII	GATC	6 cut(s)	94, 141, 187, 330, 599, 913
NlaIII	CATG	3 cut(s)	158, 805, 898
NlaIV	GGNNCC	1 cut(s)	601
NmeAIII	GCCGAG	1 cut(s)	242
NmuCI	GTSAC	2 cut(s)	320, 1023
NsiI	ATGCAT	1 cut(s)	652
NspI	RCATGY	1 cut(s)	158
PaeR7I	CTCGAG	1 cut(s)	164
PciI	ACATGT	1 cut(s)	154
PctI	GAATGC	1 cut(s)	650
PdmI	GAANNNNTTC	3 cut(s)	81, 512, 756
PfeI	GAWTC	4 cut(s)	137, 412, 472, 850
PfoI	TCCNGGA	1 cut(s)	144
PkrI	GCNGC	5 cut(s)	64, 460, 526, 529, 685
Ppu21I	YACGTR	1 cut(s)	58
PscI	ACATGT	1 cut(s)	154
PshBI	ATTAAT	1 cut(s)	969
Psp6I	CCWGG	1 cut(s)	499
PspFI	CCCAGC	2 cut(s)	407, 530
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	1 cut(s)	601
PstNI	CAGNNNCTG	1 cut(s)	407
PsuI	RGATCY	1 cut(s)	599
RsaI	GTAC	5 cut(s)	56, 194, 245, 288, 436
RsaNI	GTAC	5 cut(s)	55, 193, 244, 287, 435
SacII	CCGCGG	1 cut(s)	528
SaqAI	TTAA	3 cut(s)	383, 969, 981
SatI	GCNGC	5 cut(s)	63, 459, 525, 528, 684
Sau3AI	GATC	6 cut(s)	94, 141, 187, 330, 599, 913
ScrFI	CCNGG	4 cut(s)	146, 450, 451, 501
SduI	GDGCHC	1 cut(s)	369
SfaNI	GCATC	5 cut(s)	388, 394, 637, 670, 873
Sfr274I	CTCGAG	1 cut(s)	164
Sfr303I	CCGCGG	1 cut(s)	528
SgrBI	CCGCGG	1 cut(s)	528
SlaI	CTCGAG	1 cut(s)	164
SmaI	CCCGGG	1 cut(s)	451
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	7 cut(s)	557, 632, 711, 859, 966, 970, 996
SsiI	CCGC	3 cut(s)	109, 525, 527
SspI	AATATT	1 cut(s)	359
SspMI	CTAG	1 cut(s)	440
StyD4I	CCNGG	4 cut(s)	144, 448, 449, 499
TaaI	ACNGT	2 cut(s)	115, 1023
TaiI	ACGT	2 cut(s)	60, 771
TaqI	TCGA	5 cut(s)	135, 140, 165, 186, 506
TaqII	GACCGA	1 cut(s)	282
TasI	AATT	7 cut(s)	557, 632, 711, 859, 966, 970, 996
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	2 cut(s)	527, 530
TfiI	GAWTC	4 cut(s)	137, 412, 472, 850
Tru1I	TTAA	3 cut(s)	383, 969, 981
Tru9I	TTAA	3 cut(s)	383, 969, 981
TscAI	CASTG	1 cut(s)	601
TseFI	GTSAC	2 cut(s)	320, 1023
TseI	GCWGC	3 cut(s)	62, 458, 683
Tsp45I	GTSAC	2 cut(s)	320, 1023
TspDTI	ATGAA	5 cut(s)	166, 331, 505, 883, 894
TspGWI	ACGGA	2 cut(s)	180, 680
TspMI	CCCGGG	1 cut(s)	449
TspRI	CASTG	1 cut(s)	601
VspI	ATTAAT	1 cut(s)	969
XagI	CCTNNNNNAGG	1 cut(s)	254
XapI	RAATTY	2 cut(s)	632, 859
XceI	RCATGY	1 cut(s)	158
XhoI	CTCGAG	1 cut(s)	164
XmaI	CCCGGG	1 cut(s)	449
XmiI	GTMKAC	1 cut(s)	720
XmnI	GAANNNNTTC	3 cut(s)	81, 512, 756
XspI	CTAG	1 cut(s)	440
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.