Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003339

Physical Location & Seq

Genomic Coordinates Reverse (-)

37246631 .. 37250476

Gene Structure 3846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g49830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCGGCCGCAGCTCGAGCTTTCACTCTCTCCCGCATCACCGACCTCTCCCTCAACTCCCGCCACCGCCAACTCCCACCTCCTCCGCTTTCCCGCCACCTCCTCGCCCGCCCCTTGCTCCCCTCCTTCCAACGCCGCCGTCGTCTCTCCTCCACGCTCCGATGCCTCATCTCCGGCGTCGACGGCGGCGGCGTCTCCGACGAGTTCGTCTCCACTCGGAAGTCCGGCCTCGACCGCGGATTCTCCGTCATCGCCAACATGCTCAAGCGGATTGAGCCGCTTGACAGCTCCGTCATCTCCAAAGGCGTATCGGATTCCGCTAAGGACTCGATGAAGCAGACCATCTCTACTATGCTGGGGCTGCTTCCGTCCGATCAGTTCTCCGTCACCGTTAGGGTTTCCAGAGCTCCGCTCGATCGCCTCCTCGCCTCTTCCATCATCACCGGGTATACGCTGTGGAACGCGGAGTATCGGATATCGTTGATGAGGAATTTCGACATTTCTATGGAGGATTCTGTGGCTTTGGATGGGTCAAAGATCGATGGGAGCTCGGAGGTGGTGGATGGTGAGGAAAAGGATAGTGAGAATGGATTTGGGGGGAGTAATCAGTACTTGGACTCATCTATTCCTCAGGTTTTCGGGGATTTGTCTCCGGAGGCTTTGAATTACATCCAGCGGTTGCAATCAGAGTTGAGTAATGTTAAGGAGGAACTGAAAGCTCAAAAGCAGGAAAATACGCAATTAGAATATGACACAGGACACAGAAATGATTTGTTGGATTATCTACGGTCCTTGGATTCTAATATGGTGACAGAGCTATCTCGGCCCTCATCATTAGAGGTGAAGGAGATTATACACCAACTTGTTCAAAATATATTGCAGAGATTCTTTAGAGATGGAGAATCCTCAGAATTTGAGCAAGATTTAGTTAAAGCGAATATAGAAAATGTTCTAGATTCTGATGGCGAACTTTGTGATACTGTACGGACTTCACGAGATTATCTAGCAAAGCTTCTTTTCTGGTGCATGTTGTTAGGTCATCATTTGAGAGGCTTGGAGAACAGATTACATTTGAGTTGTGTTGTTGGATTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

366

Amino Acids

40.79

Weight (kDa)

5.5

Isoelectric Point (pI)

55.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	86 - 164	8.7e-23	Protein of unknown function (DUF760)
DUF760	PF05542	257 - 361	4.1e-23	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14970
fragaria_vesca	FvH4_6g49830 FvH4_6g49830 FvH4_6g49830 FvH4_6g49830
malus_domestica	MD09G1041100.v1.1 MD17G1042400.v1.1
prunus_persica	Prupe.3G276600_v2.0.a1 Prupe.3G276600_v2.0.a1
pyrus_communis	pycom17g03800
rosa_chinensis	RchiOBHm_Chr2g0169981 RchiOBHm_Chr4g0386121 RchiOBHm_Chr4g0386261 RchiOBHm_Chr4g0386271
rosa_laevigata	RLG00000021916
rosa_multiflora	Rmu_sc0002862.1_g000014 Rmu_sc0003415.1_g000008 Rmu_sc0013078.1_g000018 Rmu_ssc0000389.1_g000006
rosa_roxburghii	Rroxscaffold_2G00081690 Rroxscaffold_5G00333850
rosa_rugosa	Rorug02G0544900
rosa_samantha	Rh2AG616900 Rh2CG598000 Rh2DG639900 Rh3CG265700 Rh4AG010800 Rh4BG007900 Rh4DG118700 Rh5DG240500 Rh7DG285000 Rh7DG341500
rosa_wichuraiana	Rw2G029160 Rw2G034420 Rw2G051100 Rw3G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	206, 290
AccBSI	CCGCTC	1 cut(s)	412
AccI	GTMKAC	2 cut(s)	180, 449
AccII	CGCG	2 cut(s)	237, 464
AccIII	TCCGGA	1 cut(s)	652
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	2 cut(s)	490, 911
AcyI	GRCGYC	2 cut(s)	177, 192
AfaI	GTAC	2 cut(s)	611, 984
AgsI	TTSAA	2 cut(s)	664, 869
AluBI	AGCT	8 cut(s)	14, 20, 288, 407, 549, 719, 817, 1012
AluI	AGCT	8 cut(s)	14, 20, 288, 407, 549, 719, 817, 1012
Alw21I	GWGCWC	2 cut(s)	409, 551
Alw26I	GTCTC	4 cut(s)	149, 199, 214, 654
Ama87I	CYCGRG	1 cut(s)	15
Aor13HI	TCCGGA	1 cut(s)	652
AoxI	GGCC	3 cut(s)	6, 226, 824
ApeKI	GCWGC	2 cut(s)	11, 361
ApoI	RAATTY	2 cut(s)	490, 911
Asp700I	GAANNNNTTC	1 cut(s)	948
AspS9I	GGNCC	2 cut(s)	789, 825
AsuC2I	CCSGG	1 cut(s)	445
AsuHPI	GGTGA	6 cut(s)	31, 379, 433, 578, 820, 853
AvaI	CYCGRG	1 cut(s)	15
AvaII	GGWCC	1 cut(s)	789
AxyI	CCTNAGG	1 cut(s)	630
BanII	GRGCYC	2 cut(s)	409, 551
BauI	CACGAG	1 cut(s)	993
Bbv12I	GWGCWC	2 cut(s)	409, 551
BbvI	GCAGC	2 cut(s)	23, 348
BccI	CCATC	7 cut(s)	350, 443, 521, 536, 557, 890, 956
BceAI	ACGGC	2 cut(s)	123, 199
BcnI	CCSGG	1 cut(s)	445
BcoDI	GTCTC	4 cut(s)	149, 199, 214, 654
BfaI	CTAG	2 cut(s)	953, 1004
BisI	GCNGC	8 cut(s)	6, 9, 12, 136, 187, 190, 278, 362
BlsI	GCNGC	8 cut(s)	7, 10, 13, 137, 188, 191, 279, 363
BmcAI	AGTACT	1 cut(s)	611
Bme1390I	CCNGG	1 cut(s)	445
Bme18I	GGWCC	1 cut(s)	789
BmeT110I	CYCGRG	1 cut(s)	15
BmgT120I	GGNCC	2 cut(s)	789, 825
BmrFI	CCNGG	1 cut(s)	445
BmsI	GCATC	2 cut(s)	45, 152
BplI	GAGNNNNNCTC	4 cut(s)	194, 226, 396, 428
Bpu10I	CCTNAGC	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	248
BpuMI	CCSGG	1 cut(s)	445
Bsa29I	ATCGAT	1 cut(s)	540
BsaHI	GRCGYC	2 cut(s)	177, 192
BsaJI	CCNNGG	2 cut(s)	235, 792
BsaWI	WCCGGW	1 cut(s)	652
Bse21I	CCTNAGG	1 cut(s)	630
BseAI	TCCGGA	1 cut(s)	652
BseCI	ATCGAT	1 cut(s)	540
BseDI	CCNNGG	2 cut(s)	235, 792
BseGI	GGATG	3 cut(s)	532, 568, 669
BseMII	CTCAG	2 cut(s)	644, 921
BseRI	GAGGAG	4 cut(s)	72, 92, 139, 413
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	2 cut(s)	23, 348
BseYI	CCCAGC	1 cut(s)	355
Bsh1236I	CGCG	2 cut(s)	237, 464
Bsh1285I	CGRYCG	3 cut(s)	9, 235, 418
BshFI	GGCC	3 cut(s)	8, 228, 826
BshVI	ATCGAT	1 cut(s)	540
BsiEI	CGRYCG	3 cut(s)	9, 235, 418
BsiHKAI	GWGCWC	2 cut(s)	409, 551
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	4 cut(s)	174, 225, 444, 653
BsmAI	GTCTC	4 cut(s)	149, 199, 214, 654
BsmBI	CGTCTC	3 cut(s)	149, 199, 214
BsnI	GGCC	3 cut(s)	8, 228, 826
BsoBI	CYCGRG	1 cut(s)	15
Bsp1286I	GDGCHC	2 cut(s)	409, 551
Bsp13I	TCCGGA	1 cut(s)	652
Bsp143I	GATC	3 cut(s)	373, 415, 537
BspANI	GGCC	3 cut(s)	8, 228, 826
BspCNI	CTCAG	2 cut(s)	643, 920
BspDI	ATCGAT	1 cut(s)	540
BspEI	TCCGGA	1 cut(s)	652
BspFNI	CGCG	2 cut(s)	237, 464
BsrBI	CCGCTC	1 cut(s)	412
BssECI	CCNNGG	2 cut(s)	235, 792
BssMI	GATC	3 cut(s)	373, 415, 537
BssNAI	GTATAC	1 cut(s)	450
BssNI	GRCGYC	2 cut(s)	177, 192
BssSI	CACGAG	1 cut(s)	993
BssT1I	CCWWGG	1 cut(s)	792
Bst1107I	GTATAC	1 cut(s)	450
Bst2BI	CACGAG	1 cut(s)	993
Bst4CI	ACNGT	3 cut(s)	391, 789, 982
Bst6I	CTCTTC	1 cut(s)	436
BstACI	GRCGYC	2 cut(s)	177, 192
BstC8I	GCNNGC	1 cut(s)	109
BstDEI	CTNAG	3 cut(s)	321, 630, 907
BstDSI	CCRYGG	1 cut(s)	235
BstF5I	GGATG	3 cut(s)	532, 568, 669
BstFNI	CGCG	2 cut(s)	237, 464
BstKTI	GATC	3 cut(s)	376, 418, 540
BstMAI	GTCTC	4 cut(s)	149, 199, 214, 654
BstMBI	GATC	3 cut(s)	373, 415, 537
BstMCI	CGRYCG	3 cut(s)	9, 235, 418
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 17, 183, 234, 274, 361, 823
BstNSI	RCATGY	2 cut(s)	262, 1030
BstSCI	CCNGG	1 cut(s)	443
BstUI	CGCG	2 cut(s)	237, 464
BstV1I	GCAGC	2 cut(s)	23, 348
BstZ17I	GTATAC	1 cut(s)	450
BstZI	CGGCCG	1 cut(s)	6
Bsu15I	ATCGAT	1 cut(s)	540
Bsu36I	CCTNAGG	1 cut(s)	630
BsuRI	GGCC	3 cut(s)	8, 228, 826
BsuTUI	ATCGAT	1 cut(s)	540
BtgI	CCRYGG	1 cut(s)	235
BtgZI	GCGATG	1 cut(s)	235
BtsCI	GGATG	3 cut(s)	532, 568, 669
Cac8I	GCNNGC	1 cut(s)	109
CciNI	GCGGCCGC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	789, 825
Cfr42I	CCGCGG	1 cut(s)	238
ClaI	ATCGAT	1 cut(s)	540
CseI	GACGC	2 cut(s)	166, 181
Csp6I	GTAC	2 cut(s)	610, 983
CviAII	CATG	2 cut(s)	259, 1027
CviQI	GTAC	2 cut(s)	610, 983
DdeI	CTNAG	3 cut(s)	321, 630, 907
DpnI	GATC	3 cut(s)	375, 417, 539
DpnII	GATC	3 cut(s)	373, 415, 537
DrdI	GACNNNNNNGTC	2 cut(s)	206, 290
DseDI	GACNNNNNNGTC	2 cut(s)	206, 290
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	436
Ecl136II	GAGCTC	2 cut(s)	407, 549
EclXI	CGGCCG	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	792
Eco24I	GRGCYC	2 cut(s)	409, 551
Eco32I	GATATC	1 cut(s)	477
Eco47I	GGWCC	1 cut(s)	789
Eco52I	CGGCCG	1 cut(s)	6
Eco53kI	GAGCTC	2 cut(s)	407, 549
Eco81I	CCTNAGG	1 cut(s)	630
Eco88I	CYCGRG	1 cut(s)	15
EcoICRI	GAGCTC	2 cut(s)	407, 549
EcoRV	GATATC	1 cut(s)	477
EcoT14I	CCWWGG	1 cut(s)	792
EcoT38I	GRGCYC	2 cut(s)	409, 551
ErhI	CCWWGG	1 cut(s)	792
Esp3I	CGTCTC	3 cut(s)	149, 199, 214
FaeI	CATG	2 cut(s)	262, 1030
FatI	CATG	2 cut(s)	258, 1026
FauI	CCCGC	4 cut(s)	41, 68, 101, 116
FblI	GTMKAC	2 cut(s)	180, 449
Fnu4HI	GCNGC	8 cut(s)	6, 9, 12, 136, 187, 190, 278, 362
FokI	GGATG	3 cut(s)	539, 575, 656
FriOI	GRGCYC	2 cut(s)	409, 551
Fsp4HI	GCNGC	8 cut(s)	6, 9, 12, 136, 187, 190, 278, 362
FspBI	CTAG	2 cut(s)	953, 1004
GluI	GCNGC	8 cut(s)	6, 9, 12, 136, 187, 190, 278, 362
GsaI	CCCAGC	1 cut(s)	359
HaeIII	GGCC	3 cut(s)	8, 228, 826
HapII	CCGG	4 cut(s)	174, 225, 444, 653
HgaI	GACGC	2 cut(s)	166, 181
Hin1I	GRCGYC	2 cut(s)	177, 192
Hin1II	CATG	2 cut(s)	262, 1030
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	1010
HinfI	GANTC	9 cut(s)	240, 314, 326, 512, 617, 797, 885, 902, 956
HpaII	CCGG	4 cut(s)	174, 225, 444, 653
HphI	GGTGA	6 cut(s)	31, 379, 433, 578, 820, 853
Hpy166II	GTNNAC	2 cut(s)	181, 450
Hpy188III	TCNNGA	4 cut(s)	402, 653, 953, 993
Hpy8I	GTNNAC	2 cut(s)	181, 450
Hpy99I	CGWCG	4 cut(s)	144, 182, 185, 203
HpyAV	CCTTC	2 cut(s)	136, 838
HpyCH4III	ACNGT	3 cut(s)	391, 789, 982
HpyCH4V	TGCA	3 cut(s)	682, 880, 1026
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 17, 183, 234, 274, 361, 823
HpyF3I	CTNAG	3 cut(s)	321, 630, 907
Hsp92I	GRCGYC	2 cut(s)	177, 192
Hsp92II	CATG	2 cut(s)	262, 1030
Kpn2I	TCCGGA	1 cut(s)	652
KspI	CCGCGG	1 cut(s)	238
Kzo9I	GATC	3 cut(s)	373, 415, 537
LmnI	GCTCC	5 cut(s)	123, 162, 293, 412, 546
Lsp1109I	GCAGC	2 cut(s)	23, 348
LweI	GCATC	2 cut(s)	45, 152
MaeI	CTAG	2 cut(s)	953, 1004
MaeIII	GTNAC	2 cut(s)	385, 808
MalI	GATC	3 cut(s)	375, 417, 539
MbiI	CCGCTC	1 cut(s)	412
MboI	GATC	3 cut(s)	373, 415, 537
MboII	GAAGA	1 cut(s)	423
MhlI	GDGCHC	2 cut(s)	409, 551
MluCI	AATT	4 cut(s)	490, 664, 740, 911
MlyI	GAGTC	2 cut(s)	320, 611
MmeI	TCCRAC	4 cut(s)	154, 222, 756, 1066
MroI	TCCGGA	1 cut(s)	652
MroXI	GAANNNNTTC	1 cut(s)	948
MseI	TTAA	2 cut(s)	702, 930
MslI	CAYNNNNRTG	2 cut(s)	503, 765
MspA1I	CMGCKG	2 cut(s)	237, 676
MspI	CCGG	4 cut(s)	174, 225, 444, 653
MspR9I	CCNGG	1 cut(s)	445
MvnI	CGCG	2 cut(s)	237, 464
MwoI	GCNNNNNNNGC	7 cut(s)	11, 17, 183, 234, 274, 361, 823
NciI	CCSGG	1 cut(s)	445
NdeII	GATC	3 cut(s)	373, 415, 537
NlaIII	CATG	2 cut(s)	262, 1030
NmeAIII	GCCGAG	1 cut(s)	802
NmuCI	GTSAC	2 cut(s)	385, 808
NotI	GCGGCCGC	1 cut(s)	6
NspI	RCATGY	2 cut(s)	262, 1030
PaeR7I	CTCGAG	1 cut(s)	15
PcsI	WCGNNNNNNNCGW	3 cut(s)	139, 189, 991
PdmI	GAANNNNTTC	1 cut(s)	948
PfeI	GAWTC	7 cut(s)	240, 314, 512, 797, 885, 902, 956
PkrI	GCNGC	8 cut(s)	7, 10, 13, 137, 188, 191, 279, 363
Ple19I	CGATCG	1 cut(s)	418
PleI	GAGTC	2 cut(s)	320, 611
PpsI	GAGTC	2 cut(s)	320, 611
Psp124BI	GAGCTC	2 cut(s)	409, 551
PspFI	CCCAGC	1 cut(s)	355
PspPI	GGNCC	2 cut(s)	789, 825
PspXI	VCTCGAGB	1 cut(s)	15
PvuI	CGATCG	1 cut(s)	418
RsaI	GTAC	2 cut(s)	611, 984
RsaNI	GTAC	2 cut(s)	610, 983
RseI	CAYNNNNRTG	2 cut(s)	503, 765
SacI	GAGCTC	2 cut(s)	409, 551
SacII	CCGCGG	1 cut(s)	238
SalI	GTCGAC	1 cut(s)	179
SaqAI	TTAA	2 cut(s)	702, 930
SatI	GCNGC	8 cut(s)	6, 9, 12, 136, 187, 190, 278, 362
Sau3AI	GATC	3 cut(s)	373, 415, 537
Sau96I	GGNCC	2 cut(s)	789, 825
ScaI	AGTACT	1 cut(s)	611
SchI	GAGTC	2 cut(s)	320, 611
ScrFI	CCNGG	1 cut(s)	445
SduI	GDGCHC	2 cut(s)	409, 551
SfaNI	GCATC	2 cut(s)	45, 152
Sfr274I	CTCGAG	1 cut(s)	15
Sfr303I	CCGCGG	1 cut(s)	238
SgrBI	CCGCGG	1 cut(s)	238
SgrDI	CGTCGACG	1 cut(s)	179
SinI	GGWCC	1 cut(s)	789
SlaI	CTCGAG	1 cut(s)	15
SmiMI	CAYNNNNRTG	2 cut(s)	503, 765
SmlI	CTYRAG	2 cut(s)	15, 263
SmoI	CTYRAG	2 cut(s)	15, 263
Sse9I	AATT	4 cut(s)	490, 664, 740, 911
SspMI	CTAG	2 cut(s)	953, 1004
SstI	GAGCTC	2 cut(s)	409, 551
StyD4I	CCNGG	1 cut(s)	443
StyI	CCWWGG	1 cut(s)	792
TaaI	ACNGT	3 cut(s)	391, 789, 982
TaqI	TCGA	7 cut(s)	16, 180, 231, 329, 414, 495, 540
TasI	AATT	4 cut(s)	490, 664, 740, 911
TatI	WGTACW	1 cut(s)	609
TauI	GCSGC	6 cut(s)	8, 11, 138, 189, 192, 280
TfiI	GAWTC	7 cut(s)	240, 314, 512, 797, 885, 902, 956
Tru1I	TTAA	2 cut(s)	702, 930
Tru9I	TTAA	2 cut(s)	702, 930
TseFI	GTSAC	2 cut(s)	385, 808
TseI	GCWGC	2 cut(s)	11, 361
Tsp45I	GTSAC	2 cut(s)	385, 808
TspDTI	ATGAA	1 cut(s)	347
TspGWI	ACGGA	5 cut(s)	235, 280, 357, 373, 1000
VpaK11BI	GGWCC	1 cut(s)	789
XapI	RAATTY	2 cut(s)	490, 911
XbaI	TCTAGA	1 cut(s)	952
XceI	RCATGY	2 cut(s)	262, 1030
XhoI	CTCGAG	1 cut(s)	15
XmiI	GTMKAC	2 cut(s)	180, 449
XmnI	GAANNNNTTC	1 cut(s)	948
XspI	CTAG	2 cut(s)	953, 1004
ZrmI	AGTACT	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.