Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003339

Physical Location & Seq

Genomic Coordinates Reverse (-)

84124929 .. 84127562

Gene Structure 2634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG616900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCGGCCGCAGCTCGGGCTTTCACTCGCCTCACCGACCTGTCACTCAAGCCCCGCCACCCACAACCACCACCGCCTCCCGTTTCCCGCCACCACCTCCTCGCCCGCCCATTACTCCCCTCCTTCCGCGCCCAACGGCGTCGTCTGGCCTGCTCGGCGGCTTCCACAATCCGATGCCTCATCTCCGGCGTCGACGGCGGCGGCGTGTCCGACGAGTTCGTCTCGACGCGGAAGTCCGGCTTCGACCGCGGATTCTCCGTTATCGCCAATATGCTGAAGCGGATTGAGCCGCTTGACAGCTCCGTTATCTCCAAAGGCGTTTCCGATTCCGCTAAGGACTCGATGAAGCAGACCATCTCTACTATGCTGGGATTGCTGCCGTCCGATCAGTTCTCCGTCACCGTTAGGGTTTGCAGAGCTCCCCTTGATCGCCTCCTCGCCTCTTCCATAATCACCGGGTATACACTGTGGAACGCGGAGTATCGGATATCGTTGATGAGGAATTTTGACATTTCTACGGAGAATTCTGTGGCTTTGGATGGGTCGAAGATCGATGGGAGTTCGGAGACGGTGGATGGTGAGAAAAGGGGTAGCGAGAATGGATTTGGGGCGAGTAATCAATACCTGGGCTCAACAACTCCTCAAGTTTTCGGGGATTTGTCTCCGGAGGCTTTGAATTACATCCAGAGGTTGCAATCAGAGTTAACTAATGTTAAGGAGGAACTGAAAGCTCAAAAGCAGGAAAATATGCAATTAGAATATGACACAGGACACAGAAATGATTTGTTGGATTATCTCCGGTCCTTGGATTCTAGTATGGTGACTGAGCTATCTCGGCCCTCATCATTAGAGGTGGAGGAGATTATACACCAACTTGTTCAAAATATATTGCAGAGATTCTTCAAAGATGGAGAATCCTCAGAATTCGAGGAAGATTTAGTTAAAGCGAATATAGAGAATGTTCTAGATTCTGATGGCGAACTTTGTGATACTGTAGGAACTTCACGAGATTACCTAGCGAAGCTTCTTTTCTGGTGTATGTTATTAGGTCATCATTTGAGAGGCTTGGAGAACAGATTACATTTGAGTTGTGTTGTTGGATTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

369

Amino Acids

40.89

Weight (kDa)

5.7

Isoelectric Point (pI)

50.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	90 - 168	1.2e-21	Protein of unknown function (DUF760)
DUF760	PF05542	261 - 365	2.5e-22	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14970
fragaria_vesca	FvH4_6g49830 FvH4_6g49830 FvH4_6g49830 FvH4_6g49830
malus_domestica	MD09G1041100.v1.1 MD17G1042400.v1.1
prunus_persica	Prupe.3G276600_v2.0.a1 Prupe.3G276600_v2.0.a1
pyrus_communis	pycom17g03800
rosa_chinensis	RchiOBHm_Chr2g0169981 RchiOBHm_Chr4g0386121 RchiOBHm_Chr4g0386261 RchiOBHm_Chr4g0386271
rosa_laevigata	RLG00000021916
rosa_multiflora	Rmu_sc0002862.1_g000014 Rmu_sc0003415.1_g000008 Rmu_sc0013078.1_g000018 Rmu_ssc0000389.1_g000006
rosa_roxburghii	Rroxscaffold_2G00081690 Rroxscaffold_5G00333850
rosa_rugosa	Rorug02G0544900
rosa_samantha	Rh2AG616900 Rh2CG598000 Rh2DG639900 Rh3CG265700 Rh4AG010800 Rh4BG007900 Rh4DG118700 Rh5DG240500 Rh7DG285000 Rh7DG341500
rosa_wichuraiana	Rw2G029160 Rw2G034420 Rw2G051100 Rw3G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	218, 232
AccI	GTMKAC	2 cut(s)	192, 461
AccII	CGCG	4 cut(s)	129, 229, 249, 476
AccIII	TCCGGA	1 cut(s)	664
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	3 cut(s)	502, 523, 923
AcuI	CTGAAG	1 cut(s)	296
AcyI	GRCGYC	2 cut(s)	139, 189
AfiI	CCNNNNNNNGG	2 cut(s)	15, 805
AgsI	TTSAA	3 cut(s)	676, 881, 904
AjnI	CCWGG	1 cut(s)	624
AluBI	AGCT	6 cut(s)	14, 300, 419, 731, 829, 1024
AluI	AGCT	6 cut(s)	14, 300, 419, 731, 829, 1024
Alw21I	GWGCWC	1 cut(s)	421
Alw26I	GTCTC	3 cut(s)	226, 560, 666
Ama87I	CYCGRG	1 cut(s)	15
Aor13HI	TCCGGA	1 cut(s)	664
AoxI	GGCC	3 cut(s)	6, 147, 836
ApeKI	GCWGC	2 cut(s)	11, 376
ApoI	RAATTY	3 cut(s)	502, 523, 923
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	2 cut(s)	801, 837
AsuC2I	CCSGG	1 cut(s)	457
AsuHPI	GGTGA	5 cut(s)	25, 391, 445, 590, 832
AvaI	CYCGRG	1 cut(s)	15
AvaII	GGWCC	1 cut(s)	801
BanII	GRGCYC	2 cut(s)	421, 632
BauI	CACGAG	1 cut(s)	1005
Bbv12I	GWGCWC	1 cut(s)	421
BbvI	GCAGC	2 cut(s)	23, 363
BccI	CCATC	6 cut(s)	362, 533, 548, 569, 902, 968
BceAI	ACGGC	3 cut(s)	152, 211, 364
BciT130I	CCWGG	1 cut(s)	626
BcnI	CCSGG	1 cut(s)	457
BcoDI	GTCTC	3 cut(s)	226, 560, 666
BfaI	CTAG	3 cut(s)	813, 965, 1016
BfmI	CTRYAG	1 cut(s)	993
BglI	GCCNNNNNGGC	1 cut(s)	155
BisI	GCNGC	8 cut(s)	6, 9, 12, 159, 199, 202, 290, 377
BlsI	GCNGC	8 cut(s)	7, 10, 13, 160, 200, 203, 291, 378
Bme1390I	CCNGG	2 cut(s)	457, 626
Bme18I	GGWCC	1 cut(s)	801
BmeT110I	CYCGRG	1 cut(s)	15
BmgT120I	GGNCC	2 cut(s)	801, 837
BmrFI	CCNGG	2 cut(s)	457, 626
BmsI	GCATC	1 cut(s)	164
BplI	GAGNNNNNCTC	2 cut(s)	206, 238
Bpu10I	CCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	2 cut(s)	32, 627
BpuMI	CCSGG	1 cut(s)	457
Bsa29I	ATCGAT	1 cut(s)	552
BsaHI	GRCGYC	2 cut(s)	139, 189
BsaJI	CCNNGG	3 cut(s)	247, 625, 804
BsaWI	WCCGGW	2 cut(s)	664, 798
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 805
BseAI	TCCGGA	1 cut(s)	664
BseBI	CCWGG	1 cut(s)	626
BseCI	ATCGAT	1 cut(s)	552
BseDI	CCNNGG	3 cut(s)	247, 625, 804
BseGI	GGATG	3 cut(s)	544, 580, 681
BseLI	CCNNNNNNNGG	2 cut(s)	15, 805
BseMII	CTCAG	2 cut(s)	816, 933
BseRI	GAGGAG	4 cut(s)	89, 425, 630, 872
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	2 cut(s)	23, 363
BseYI	CCCAGC	1 cut(s)	367
Bsh1236I	CGCG	4 cut(s)	129, 229, 249, 476
Bsh1285I	CGRYCG	2 cut(s)	9, 247
BshFI	GGCC	3 cut(s)	8, 149, 838
BshVI	ATCGAT	1 cut(s)	552
BsiEI	CGRYCG	2 cut(s)	9, 247
BsiHKAI	GWGCWC	1 cut(s)	421
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	5 cut(s)	186, 237, 456, 665, 799
BslI	CCNNNNNNNGG	2 cut(s)	15, 805
BsmAI	GTCTC	3 cut(s)	226, 560, 666
BsmBI	CGTCTC	2 cut(s)	226, 560
BsnI	GGCC	3 cut(s)	8, 149, 838
BsoBI	CYCGRG	1 cut(s)	15
Bsp1286I	GDGCHC	2 cut(s)	421, 632
Bsp13I	TCCGGA	1 cut(s)	664
Bsp143I	GATC	3 cut(s)	385, 427, 549
BspANI	GGCC	3 cut(s)	8, 149, 838
BspCNI	CTCAG	2 cut(s)	817, 932
BspDI	ATCGAT	1 cut(s)	552
BspEI	TCCGGA	1 cut(s)	664
BspFNI	CGCG	4 cut(s)	129, 229, 249, 476
BssECI	CCNNGG	3 cut(s)	247, 625, 804
BssMI	GATC	3 cut(s)	385, 427, 549
BssNAI	GTATAC	1 cut(s)	462
BssNI	GRCGYC	2 cut(s)	139, 189
BssSI	CACGAG	1 cut(s)	1005
BssT1I	CCWWGG	1 cut(s)	804
Bst1107I	GTATAC	1 cut(s)	462
Bst2BI	CACGAG	1 cut(s)	1005
Bst2UI	CCWGG	1 cut(s)	626
Bst4CI	ACNGT	4 cut(s)	403, 468, 571, 994
Bst6I	CTCTTC	1 cut(s)	448
BstACI	GRCGYC	2 cut(s)	139, 189
BstC8I	GCNNGC	2 cut(s)	106, 151
BstDEI	CTNAG	3 cut(s)	333, 825, 919
BstDSI	CCRYGG	1 cut(s)	247
BstF5I	GGATG	3 cut(s)	544, 580, 681
BstFNI	CGCG	4 cut(s)	129, 229, 249, 476
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	3 cut(s)	388, 430, 552
BstMAI	GTCTC	3 cut(s)	226, 560, 666
BstMBI	GATC	3 cut(s)	385, 427, 549
BstMCI	CGRYCG	2 cut(s)	9, 247
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 17, 155, 195, 246, 286, 373, 835
BstNI	CCWGG	1 cut(s)	626
BstSCI	CCNGG	2 cut(s)	455, 624
BstSFI	CTRYAG	1 cut(s)	993
BstUI	CGCG	4 cut(s)	129, 229, 249, 476
BstV1I	GCAGC	2 cut(s)	23, 363
BstZ17I	GTATAC	1 cut(s)	462
BstZI	CGGCCG	1 cut(s)	6
Bsu15I	ATCGAT	1 cut(s)	552
BsuRI	GGCC	3 cut(s)	8, 149, 838
BsuTUI	ATCGAT	1 cut(s)	552
BtgI	CCRYGG	1 cut(s)	247
BtsCI	GGATG	3 cut(s)	544, 580, 681
BtsIMutI	CAGTG	1 cut(s)	464
Cac8I	GCNNGC	2 cut(s)	106, 151
CciNI	GCGGCCGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	801, 837
Cfr42I	CCGCGG	1 cut(s)	250
ClaI	ATCGAT	1 cut(s)	552
CseI	GACGC	3 cut(s)	128, 178, 235
DdeI	CTNAG	3 cut(s)	333, 825, 919
DpnI	GATC	3 cut(s)	387, 429, 551
DpnII	GATC	3 cut(s)	385, 427, 549
DrdI	GACNNNNNNGTC	2 cut(s)	218, 232
DseDI	GACNNNNNNGTC	2 cut(s)	218, 232
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	448
EarI	CTCTTC	1 cut(s)	448
Ecl136II	GAGCTC	1 cut(s)	419
EclXI	CGGCCG	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	804
Eco24I	GRGCYC	2 cut(s)	421, 632
Eco32I	GATATC	1 cut(s)	489
Eco47I	GGWCC	1 cut(s)	801
Eco52I	CGGCCG	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	419
Eco57I	CTGAAG	1 cut(s)	296
Eco88I	CYCGRG	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	419
EcoRI	GAATTC	2 cut(s)	523, 923
EcoRII	CCWGG	1 cut(s)	624
EcoRV	GATATC	1 cut(s)	489
EcoT14I	CCWWGG	1 cut(s)	804
EcoT38I	GRGCYC	2 cut(s)	421, 632
ErhI	CCWWGG	1 cut(s)	804
Esp3I	CGTCTC	2 cut(s)	226, 560
FalI	AAGNNNNNCTT	2 cut(s)	224, 256
FauI	CCCGC	3 cut(s)	62, 95, 113
FblI	GTMKAC	2 cut(s)	192, 461
Fnu4HI	GCNGC	8 cut(s)	6, 9, 12, 159, 199, 202, 290, 377
FokI	GGATG	3 cut(s)	551, 587, 668
FriOI	GRGCYC	2 cut(s)	421, 632
Fsp4HI	GCNGC	8 cut(s)	6, 9, 12, 159, 199, 202, 290, 377
FspBI	CTAG	3 cut(s)	813, 965, 1016
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	8 cut(s)	6, 9, 12, 159, 199, 202, 290, 377
GsaI	CCCAGC	1 cut(s)	371
HaeIII	GGCC	3 cut(s)	8, 149, 838
HapII	CCGG	5 cut(s)	186, 237, 456, 665, 799
HgaI	GACGC	3 cut(s)	128, 178, 235
HhaI	GCGC	1 cut(s)	131
Hin1I	GRCGYC	2 cut(s)	139, 189
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HincII	GTYRAC	2 cut(s)	193, 705
HindII	GTYRAC	2 cut(s)	193, 705
HindIII	AAGCTT	1 cut(s)	1022
HinfI	GANTC	7 cut(s)	252, 326, 338, 809, 897, 914, 968
HpaI	GTTAAC	1 cut(s)	705
HpaII	CCGG	5 cut(s)	186, 237, 456, 665, 799
HphI	GGTGA	5 cut(s)	25, 391, 445, 590, 832
Hpy166II	GTNNAC	3 cut(s)	193, 462, 705
Hpy188I	TCNGA	9 cut(s)	173, 211, 325, 385, 486, 565, 700, 922, 973
Hpy188III	TCNNGA	5 cut(s)	223, 665, 685, 965, 1005
Hpy8I	GTNNAC	3 cut(s)	193, 462, 705
Hpy99I	CGWCG	5 cut(s)	144, 194, 197, 215, 229
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	4 cut(s)	403, 468, 571, 994
HpyCH4V	TGCA	4 cut(s)	414, 694, 751, 892
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 17, 155, 195, 246, 286, 373, 835
HpyF3I	CTNAG	3 cut(s)	333, 825, 919
Hsp92I	GRCGYC	2 cut(s)	139, 189
HspAI	GCGC	1 cut(s)	129
Kpn2I	TCCGGA	1 cut(s)	664
KspAI	GTTAAC	1 cut(s)	705
KspI	CCGCGG	1 cut(s)	250
Kzo9I	GATC	3 cut(s)	385, 427, 549
LmnI	GCTCC	2 cut(s)	305, 424
Lsp1109I	GCAGC	2 cut(s)	23, 363
LweI	GCATC	1 cut(s)	164
MaeI	CTAG	3 cut(s)	813, 965, 1016
MaeIII	GTNAC	3 cut(s)	42, 397, 820
MalI	GATC	3 cut(s)	387, 429, 551
MboI	GATC	3 cut(s)	385, 427, 549
MboII	GAAGA	4 cut(s)	435, 559, 892, 944
MhlI	GDGCHC	2 cut(s)	421, 632
MluCI	AATT	5 cut(s)	502, 523, 676, 752, 923
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	3 cut(s)	234, 768, 1078
MroI	TCCGGA	1 cut(s)	664
MseI	TTAA	3 cut(s)	704, 714, 942
MslI	CAYNNNNRTG	1 cut(s)	777
MspA1I	CMGCKG	1 cut(s)	249
MspI	CCGG	5 cut(s)	186, 237, 456, 665, 799
MspR9I	CCNGG	2 cut(s)	457, 626
MvaI	CCWGG	1 cut(s)	626
MvnI	CGCG	4 cut(s)	129, 229, 249, 476
MwoI	GCNNNNNNNGC	8 cut(s)	11, 17, 155, 195, 246, 286, 373, 835
NciI	CCSGG	1 cut(s)	457
NdeII	GATC	3 cut(s)	385, 427, 549
NmeAIII	GCCGAG	2 cut(s)	134, 814
NmuCI	GTSAC	3 cut(s)	42, 397, 820
NotI	GCGGCCGC	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PfeI	GAWTC	6 cut(s)	252, 326, 809, 897, 914, 968
PkrI	GCNGC	8 cut(s)	7, 10, 13, 160, 200, 203, 291, 378
PleI	GAGTC	1 cut(s)	332
PpsI	GAGTC	1 cut(s)	332
Psp124BI	GAGCTC	1 cut(s)	421
Psp6I	CCWGG	1 cut(s)	624
PspFI	CCCAGC	1 cut(s)	367
PspGI	CCWGG	1 cut(s)	624
PspPI	GGNCC	2 cut(s)	801, 837
RseI	CAYNNNNRTG	1 cut(s)	777
SacI	GAGCTC	1 cut(s)	421
SacII	CCGCGG	1 cut(s)	250
SalI	GTCGAC	1 cut(s)	191
SaqAI	TTAA	3 cut(s)	704, 714, 942
SatI	GCNGC	8 cut(s)	6, 9, 12, 159, 199, 202, 290, 377
Sau3AI	GATC	3 cut(s)	385, 427, 549
Sau96I	GGNCC	2 cut(s)	801, 837
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	2 cut(s)	457, 626
SduI	GDGCHC	2 cut(s)	421, 632
SfaNI	GCATC	1 cut(s)	164
SfcI	CTRYAG	1 cut(s)	993
Sfr303I	CCGCGG	1 cut(s)	250
SgrBI	CCGCGG	1 cut(s)	250
SgrDI	CGTCGACG	1 cut(s)	191
SinI	GGWCC	1 cut(s)	801
SmiMI	CAYNNNNRTG	1 cut(s)	777
SmlI	CTYRAG	2 cut(s)	47, 642
SmoI	CTYRAG	2 cut(s)	47, 642
Sse9I	AATT	5 cut(s)	502, 523, 676, 752, 923
SspMI	CTAG	3 cut(s)	813, 965, 1016
SstI	GAGCTC	1 cut(s)	421
StyD4I	CCNGG	2 cut(s)	455, 624
StyI	CCWWGG	1 cut(s)	804
TaaI	ACNGT	4 cut(s)	403, 468, 571, 994
TaqI	TCGA	7 cut(s)	192, 224, 243, 341, 545, 552, 927
TasI	AATT	5 cut(s)	502, 523, 676, 752, 923
TauI	GCSGC	6 cut(s)	8, 11, 161, 201, 204, 292
TfiI	GAWTC	6 cut(s)	252, 326, 809, 897, 914, 968
Tru1I	TTAA	3 cut(s)	704, 714, 942
Tru9I	TTAA	3 cut(s)	704, 714, 942
TscAI	CASTG	1 cut(s)	471
TseFI	GTSAC	3 cut(s)	42, 397, 820
TseI	GCWGC	2 cut(s)	11, 376
Tsp45I	GTSAC	3 cut(s)	42, 397, 820
TspDTI	ATGAA	1 cut(s)	359
TspGWI	ACGGA	4 cut(s)	247, 292, 385, 533
TspRI	CASTG	1 cut(s)	471
VpaK11BI	GGWCC	1 cut(s)	801
XapI	RAATTY	3 cut(s)	502, 523, 923
XbaI	TCTAGA	1 cut(s)	964
XmiI	GTMKAC	2 cut(s)	192, 461
XspI	CTAG	3 cut(s)	813, 965, 1016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.