Rh5DG240500

Protein of unknown function (DUF760)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003339
Physical Location & Seq
Reverse (-)
27426845 .. 27427506
662 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG240500.1

Sequence Viewer

Length: 468 bp
ATGCTGAAGAGGATTGAGCCGCTTGACAGCTCCGTTATCTCCAAAGGCGTTTCCGATTCCGCTAAGGACTCGATGAAGCAGACCATCTCTACTCTGCTTGGATTGCTGCCGTCCGATCAGTTCTCCGTCACCGTTAGGGTTTGCAGAGCTCCCCTTGATCGCCTCCTCGCCTCTTCCATAATCACCGGGTATACACTGTGGAACGCGGAGTATCGGATATCGTTGATAAGGAATTTTGACATTTCTACGGAGAATTCTGTGGCTTTGTATGGGTCGAAGATAGATGGGAGTTCGGAGACGGTGGATGGTGAGGAAAGGGGTAGCGAGAATGGATTTGGGGCGAGTAATCAATACCTGGGCTCAACAACTCCTCAAGTTTTCGGGGATTTGTCTCCGGAGGCTTTGAATTACATCCAGAGGTTGCAATCGGAGTTAACTAATGTTAAGGAGGAGAGCCTTTTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

155

Amino Acids

16.94

Weight (kDa)

4.66

Isoelectric Point (pI)

39.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 1 - 78 3.3e-21 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 191
AccII CGCG 1 cut(s) 206
AccIII TCCGGA 1 cut(s) 394
AciI CCGC 3 cut(s) 20, 60, 206
AcsI RAATTY 2 cut(s) 232, 253
AcuI CTGAAG 1 cut(s) 26
AgsI TTSAA 1 cut(s) 406
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 2 cut(s) 30, 149
AluI AGCT 2 cut(s) 30, 149
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 2 cut(s) 290, 396
Aor13HI TCCGGA 1 cut(s) 394
ApeKI GCWGC 1 cut(s) 106
ApoI RAATTY 2 cut(s) 232, 253
AsuC2I CCSGG 1 cut(s) 187
AsuHPI GGTGA 3 cut(s) 121, 175, 320
BanII GRGCYC 2 cut(s) 151, 362
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 93
BccI CCATC 3 cut(s) 92, 278, 299
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 356
BcnI CCSGG 1 cut(s) 187
BcoDI GTCTC 2 cut(s) 290, 396
BisI GCNGC 2 cut(s) 20, 107
BlsI GCNGC 2 cut(s) 21, 108
Bme1390I CCNGG 2 cut(s) 187, 356
BmrFI CCNGG 2 cut(s) 187, 356
Bpu10I CCTNAGC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 357
BpuMI CCSGG 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 355
BsaWI WCCGGW 1 cut(s) 394
BseAI TCCGGA 1 cut(s) 394
BseBI CCWGG 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 2 cut(s) 310, 411
BseRI GAGGAG 3 cut(s) 155, 360, 464
BseXI GCAGC 1 cut(s) 93
Bsh1236I CGCG 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 151
BsiSI CCGG 2 cut(s) 186, 395
BsmAI GTCTC 2 cut(s) 290, 396
BsmBI CGTCTC 1 cut(s) 290
Bsp1286I GDGCHC 2 cut(s) 151, 362
Bsp13I TCCGGA 1 cut(s) 394
Bsp143I GATC 2 cut(s) 115, 157
BspACI CCGC 3 cut(s) 20, 60, 206
BspEI TCCGGA 1 cut(s) 394
BspFNI CGCG 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 2 cut(s) 115, 157
BssNAI GTATAC 1 cut(s) 192
Bst1107I GTATAC 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 3 cut(s) 133, 198, 301
Bst6I CTCTTC 2 cut(s) 2, 178
BstDEI CTNAG 1 cut(s) 63
BstF5I GGATG 2 cut(s) 310, 411
BstFNI CGCG 1 cut(s) 206
BstKTI GATC 2 cut(s) 118, 160
BstMAI GTCTC 2 cut(s) 290, 396
BstMBI GATC 2 cut(s) 115, 157
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNI CCWGG 1 cut(s) 356
BstSCI CCNGG 2 cut(s) 185, 354
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 93
BstZ17I GTATAC 1 cut(s) 192
BtsCI GGATG 2 cut(s) 310, 411
BtsIMutI CAGTG 1 cut(s) 194
CviJI RGCY 7 cut(s) 19, 30, 149, 263, 360, 401, 456
CviKI_1 RGCY 7 cut(s) 19, 30, 149, 263, 360, 401, 456
DdeI CTNAG 1 cut(s) 63
DpnI GATC 2 cut(s) 117, 159
DpnII GATC 2 cut(s) 115, 157
Eam1104I CTCTTC 2 cut(s) 2, 178
EarI CTCTTC 2 cut(s) 2, 178
Ecl136II GAGCTC 1 cut(s) 149
Eco24I GRGCYC 2 cut(s) 151, 362
Eco32I GATATC 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 26
EcoICRI GAGCTC 1 cut(s) 149
EcoRI GAATTC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 354
EcoRV GATATC 1 cut(s) 219
EcoT38I GRGCYC 2 cut(s) 151, 362
Esp3I CGTCTC 1 cut(s) 290
FaiI YATR 3 cut(s) 179, 192, 270
FblI GTMKAC 1 cut(s) 191
Fnu4HI GCNGC 2 cut(s) 20, 107
FokI GGATG 2 cut(s) 317, 398
FriOI GRGCYC 2 cut(s) 151, 362
Fsp4HI GCNGC 2 cut(s) 20, 107
GluI GCNGC 2 cut(s) 20, 107
HapII CCGG 2 cut(s) 186, 395
HincII GTYRAC 1 cut(s) 435
HindII GTYRAC 1 cut(s) 435
HinfI GANTC 2 cut(s) 56, 68
HpaI GTTAAC 1 cut(s) 435
HpaII CCGG 2 cut(s) 186, 395
HphI GGTGA 3 cut(s) 121, 175, 320
Hpy166II GTNNAC 2 cut(s) 192, 435
Hpy188I TCNGA 5 cut(s) 55, 115, 216, 295, 430
Hpy188III TCNNGA 2 cut(s) 395, 415
Hpy8I GTNNAC 2 cut(s) 192, 435
HpyCH4III ACNGT 3 cut(s) 133, 198, 301
HpyCH4V TGCA 2 cut(s) 144, 424
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpyF3I CTNAG 1 cut(s) 63
Kpn2I TCCGGA 1 cut(s) 394
KspAI GTTAAC 1 cut(s) 435
Kzo9I GATC 2 cut(s) 115, 157
LmnI GCTCC 2 cut(s) 35, 154
LpnPI CCDG 5 cut(s) 199, 341, 368, 408, 428
Lsp1109I GCAGC 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 127
MalI GATC 2 cut(s) 117, 159
MboI GATC 2 cut(s) 115, 157
MboII GAAGA 3 cut(s) 19, 165, 289
MhlI GDGCHC 2 cut(s) 151, 362
MluCI AATT 3 cut(s) 232, 253, 406
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 9 cut(s) 3, 173, 176, 181, 304, 381, 391, 411, 442
MroI TCCGGA 1 cut(s) 394
MseI TTAA 3 cut(s) 434, 444, 466
MspI CCGG 2 cut(s) 186, 395
MspR9I CCNGG 2 cut(s) 187, 356
MvaI CCWGG 1 cut(s) 356
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 1 cut(s) 103
NciI CCSGG 1 cut(s) 187
NdeII GATC 2 cut(s) 115, 157
NmuCI GTSAC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 2 cut(s) 21, 108
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
Psp124BI GAGCTC 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
SacI GAGCTC 1 cut(s) 151
SaqAI TTAA 3 cut(s) 434, 444, 466
SatI GCNGC 2 cut(s) 20, 107
Sau3AI GATC 2 cut(s) 115, 157
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 2 cut(s) 187, 356
SduI GDGCHC 2 cut(s) 151, 362
SetI ASST 4 cut(s) 32, 151, 357, 422
SmlI CTYRAG 1 cut(s) 372
SmoI CTYRAG 1 cut(s) 372
Sse9I AATT 3 cut(s) 232, 253, 406
SsiI CCGC 3 cut(s) 20, 60, 206
SstI GAGCTC 1 cut(s) 151
StyD4I CCNGG 2 cut(s) 185, 354
TaaI ACNGT 3 cut(s) 133, 198, 301
TaqI TCGA 2 cut(s) 71, 275
TasI AATT 3 cut(s) 232, 253, 406
TauI GCSGC 1 cut(s) 22
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 3 cut(s) 434, 444, 466
Tru9I TTAA 3 cut(s) 434, 444, 466
TscAI CASTG 1 cut(s) 201
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 89
TspGWI ACGGA 3 cut(s) 22, 115, 263
TspRI CASTG 1 cut(s) 201
XapI RAATTY 2 cut(s) 232, 253
XmiI GTMKAC 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.