Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003339

Physical Location & Seq

Genomic Coordinates Forward (+)

2642789 .. 2646921

Gene Structure 4133 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1041100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCGGCGCCAGCTCGCGCCTTCGTTTTCTCCCGCGTCGCCGACCTCTCTCTCAAGCCATCCCAACCGCCGCCACCGATTTCCCGCCACCTCCTCGTCCGCCCCTTACTCCCCTCCTCCTTTCCGCGGCGACGTGTATCCGCCGGTTCAACTTCTTCTGTCCGATGCCTCATCTCCGGCGTCGACGGCGGCGGCGTGTCGGACGAGTTCGTCTCGACTCGGAAGTCCGGGTTCGACCGCGGGTTCTCCGTGATTTCGAACATGCTCAAGAAAATTGAGCCACTCGACACCTCCGTTATCTCCAAGGGCGTTTCGGATTCCGCCAGGGACTCCATGAAGCAGACCATTTCTACTATGCTGGGGTTGCTCCCGTCCGAACAGTTCTCCGTCACCGTTAGGGTTTGCAAAGCCCCTCTCCACCGCCTCCTCGCATCCTCCATAATCACCGGATATACACTGTGGAACGCGGAGTATCGGATATCGTTGATGAGGAATTTCGACATATCCACGGAGAATTCTGTGCCGTTGGATCGGTCGGAGATGGATGGGGTGTCGGATAGGGTGGAAAGCGAGGAAAGGGATGGTGGAAATGGTATCGGGGTGAGTAGCGAACTCTTGGATTCAGCAACTCCTCAGGTTTTCGGCGATTTGCCTCCGGAGGCTTTGAATTATATCCAGACGTTGCAATCAGAGCTGACAAATGTGAAGGAGGAACTGAAGGCGGAAAAGCAGGAAAATATGCAACTAGAATATGATAGAGGACCTAGGAATGATTTATTGGAGTATCTACGGTCTCTAGATTCTAATATGGTAACTGAACTATCTCGACCGTCATCATTAGAGGTGCAGGAAATTATACACCAGCTTATTCAAAATATATTGCAGAGATTCTTCAAAGATGGTACTTCCTCAGAATTTGTTGAGGATTTGGAGACAGGGGACAAAGAGATTAGCCTAGATGCTGATGGCGAACTTGAGACCATAGGAACTTCACGAGATTACCTAGCGAAACTGCTTTTCTGGTGTATGTTGTTAGGTCATCATTTAAGAGGCTTGGAGAACCGATTACATTTGAGTTGCGTTGTTGGATTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

366

Amino Acids

40.45

Weight (kDa)

5.12

Isoelectric Point (pI)

49.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	87 - 165	1.5e-21	Protein of unknown function (DUF760)
DUF760	PF05542	258 - 361	4.9e-23	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14970
fragaria_vesca	FvH4_6g49830 FvH4_6g49830 FvH4_6g49830 FvH4_6g49830
malus_domestica	MD09G1041100.v1.1 MD17G1042400.v1.1
prunus_persica	Prupe.3G276600_v2.0.a1 Prupe.3G276600_v2.0.a1
pyrus_communis	pycom17g03800
rosa_chinensis	RchiOBHm_Chr2g0169981 RchiOBHm_Chr4g0386121 RchiOBHm_Chr4g0386261 RchiOBHm_Chr4g0386271
rosa_laevigata	RLG00000021916
rosa_multiflora	Rmu_sc0002862.1_g000014 Rmu_sc0003415.1_g000008 Rmu_sc0013078.1_g000018 Rmu_ssc0000389.1_g000006
rosa_roxburghii	Rroxscaffold_2G00081690 Rroxscaffold_5G00333850
rosa_rugosa	Rorug02G0544900
rosa_samantha	Rh2AG616900 Rh2CG598000 Rh2DG639900 Rh3CG265700 Rh4AG010800 Rh4BG007900 Rh4DG118700 Rh5DG240500 Rh7DG285000 Rh7DG341500
rosa_wichuraiana	Rw2G029160 Rw2G034420 Rw2G051100 Rw3G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	209, 223
AccB1I	GGYRCC	1 cut(s)	7
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	5 cut(s)	18, 36, 127, 240, 467
AccIII	TCCGGA	1 cut(s)	655
AclWI	GGATC	1 cut(s)	537
AcsI	RAATTY	3 cut(s)	493, 514, 914
AcuI	CTGAAG	1 cut(s)	737
AcyI	GRCGYC	2 cut(s)	8, 180
AfaI	GTAC	1 cut(s)	904
AfiI	CCNNNNNNNGG	1 cut(s)	126
AflIII	ACRYGT	1 cut(s)	133
AgsI	TTSAA	4 cut(s)	150, 667, 872, 895
AjiI	CACGTC	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	323
AjuI	GAANNNNNNNTTGG	2 cut(s)	761, 793
AluBI	AGCT	3 cut(s)	14, 694, 865
AluI	AGCT	3 cut(s)	14, 694, 865
Alw26I	GTCTC	4 cut(s)	217, 798, 926, 971
AlwI	GGATC	1 cut(s)	537
Aor13HI	TCCGGA	1 cut(s)	655
ApoI	RAATTY	3 cut(s)	493, 514, 914
AspA2I	CCTAGG	1 cut(s)	764
AspLEI	GCGC	2 cut(s)	10, 20
AspS9I	GGNCC	1 cut(s)	761
AsuC2I	CCSGG	1 cut(s)	229
AsuHPI	GGTGA	3 cut(s)	382, 436, 613
AsuII	TTCGAA	1 cut(s)	257
AvaII	GGWCC	1 cut(s)	761
AvrII	CCTAGG	1 cut(s)	764
AxyI	CCTNAGG	1 cut(s)	633
BanI	GGYRCC	1 cut(s)	7
BauI	CACGAG	1 cut(s)	993
BccI	CCATC	6 cut(s)	67, 535, 539, 575, 893, 959
BceAI	ACGGC	2 cut(s)	202, 508
BciT130I	CCWGG	1 cut(s)	325
BciVI	GTATCC	1 cut(s)	148
BcnI	CCSGG	1 cut(s)	229
BcoDI	GTCTC	4 cut(s)	217, 798, 926, 971
BfaI	CTAG	5 cut(s)	746, 765, 797, 956, 1004
BfoI	RGCGCY	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	148
BisI	GCNGC	5 cut(s)	6, 71, 128, 190, 193
BlnI	CCTAGG	1 cut(s)	764
BlsI	GCNGC	5 cut(s)	7, 72, 129, 191, 194
Bme1390I	CCNGG	2 cut(s)	229, 325
Bme18I	GGWCC	1 cut(s)	761
BmgBI	CACGTC	1 cut(s)	134
BmgT120I	GGNCC	1 cut(s)	761
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	2 cut(s)	229, 325
BmsI	GCATC	3 cut(s)	155, 440, 949
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
Bpu14I	TTCGAA	1 cut(s)	257
BpuEI	CTTGAG	3 cut(s)	38, 251, 995
BpuMI	CCSGG	1 cut(s)	229
BsaHI	GRCGYC	2 cut(s)	8, 180
BsaI	GGTCTC	2 cut(s)	798, 971
BsaJI	CCNNGG	6 cut(s)	125, 238, 303, 324, 507, 764
BsaWI	WCCGGW	2 cut(s)	446, 655
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse118I	RCCGGY	1 cut(s)	143
Bse21I	CCTNAGG	1 cut(s)	633
BseAI	TCCGGA	1 cut(s)	655
BseBI	CCWGG	1 cut(s)	325
BseDI	CCNNGG	6 cut(s)	125, 238, 303, 324, 507, 764
BseGI	GGATG	4 cut(s)	59, 431, 550, 586
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseMII	CTCAG	2 cut(s)	647, 924
BseRI	GAGGAG	4 cut(s)	83, 106, 416, 621
BseYI	CCCAGC	1 cut(s)	358
BsgI	GTGCAG	1 cut(s)	866
Bsh1236I	CGCG	5 cut(s)	18, 36, 127, 240, 467
Bsh1285I	CGRYCG	3 cut(s)	238, 536, 830
BshNI	GGYRCC	1 cut(s)	7
BsiEI	CGRYCG	3 cut(s)	238, 536, 830
BsiSI	CCGG	5 cut(s)	144, 177, 228, 447, 656
BslFI	GGGAC	2 cut(s)	341, 953
BslI	CCNNNNNNNGG	1 cut(s)	126
BsmAI	GTCTC	4 cut(s)	217, 798, 926, 971
BsmBI	CGTCTC	1 cut(s)	217
BsmFI	GGGAC	2 cut(s)	341, 953
Bso31I	GGTCTC	2 cut(s)	798, 971
Bsp119I	TTCGAA	1 cut(s)	257
Bsp13I	TCCGGA	1 cut(s)	655
Bsp143I	GATC	1 cut(s)	529
BspCNI	CTCAG	2 cut(s)	646, 923
BspEI	TCCGGA	1 cut(s)	655
BspFNI	CGCG	5 cut(s)	18, 36, 127, 240, 467
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	537
BspT104I	TTCGAA	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	7
BspTNI	GGTCTC	2 cut(s)	798, 971
BsrFI	RCCGGY	1 cut(s)	143
BssAI	RCCGGY	1 cut(s)	143
BssECI	CCNNGG	6 cut(s)	125, 238, 303, 324, 507, 764
BssMI	GATC	1 cut(s)	529
BssNI	GRCGYC	2 cut(s)	8, 180
BssSI	CACGAG	1 cut(s)	993
BssT1I	CCWWGG	2 cut(s)	303, 764
Bst2BI	CACGAG	1 cut(s)	993
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	5 cut(s)	381, 394, 459, 792, 831
BstACI	GRCGYC	2 cut(s)	8, 180
BstBI	TTCGAA	1 cut(s)	257
BstC8I	GCNNGC	2 cut(s)	12, 16
BstDEI	CTNAG	2 cut(s)	633, 910
BstDSI	CCRYGG	3 cut(s)	125, 238, 507
BstF5I	GGATG	4 cut(s)	59, 431, 550, 586
BstFNI	CGCG	5 cut(s)	18, 36, 127, 240, 467
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	2 cut(s)	10, 20
BstKTI	GATC	1 cut(s)	532
BstMAI	GTCTC	4 cut(s)	217, 798, 926, 971
BstMBI	GATC	1 cut(s)	529
BstMCI	CGRYCG	3 cut(s)	238, 536, 830
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 186, 364, 691
BstNI	CCWGG	1 cut(s)	325
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	2 cut(s)	227, 323
BstUI	CGCG	5 cut(s)	18, 36, 127, 240, 467
Bsu36I	CCTNAGG	1 cut(s)	633
BsuI	GTATCC	1 cut(s)	148
BtgI	CCRYGG	3 cut(s)	125, 238, 507
BtrI	CACGTC	1 cut(s)	134
BtsCI	GGATG	4 cut(s)	59, 431, 550, 586
BtsIMutI	CAGTG	1 cut(s)	455
Cac8I	GCNNGC	2 cut(s)	12, 16
CfoI	GCGC	2 cut(s)	10, 20
Cfr10I	RCCGGY	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	761
Cfr42I	CCGCGG	2 cut(s)	128, 241
CseI	GACGC	2 cut(s)	25, 169
Csp6I	GTAC	1 cut(s)	903
CviAII	CATG	2 cut(s)	262, 334
CviJI	RGCY	9 cut(s)	14, 58, 280, 410, 662, 694, 865, 954, 1053
CviKI_1	RGCY	9 cut(s)	14, 58, 280, 410, 662, 694, 865, 954, 1053
CviQI	GTAC	1 cut(s)	903
DdeI	CTNAG	2 cut(s)	633, 910
DinI	GGCGCC	1 cut(s)	9
DpnI	GATC	1 cut(s)	531
DpnII	GATC	1 cut(s)	529
DrdI	GACNNNNNNGTC	2 cut(s)	209, 223
DseDI	GACNNNNNNGTC	2 cut(s)	209, 223
EciI	GGCGGA	4 cut(s)	89, 130, 310, 737
Eco130I	CCWWGG	2 cut(s)	303, 764
Eco31I	GGTCTC	2 cut(s)	798, 971
Eco32I	GATATC	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	761
Eco57I	CTGAAG	1 cut(s)	737
Eco81I	CCTNAGG	1 cut(s)	633
EcoO109I	RGGNCCY	1 cut(s)	761
EcoRI	GAATTC	1 cut(s)	514
EcoRII	CCWGG	1 cut(s)	323
EcoRV	GATATC	1 cut(s)	480
EcoT14I	CCWWGG	2 cut(s)	303, 764
EgeI	GGCGCC	1 cut(s)	9
EheI	GGCGCC	1 cut(s)	9
ErhI	CCWWGG	2 cut(s)	303, 764
Esp3I	CGTCTC	1 cut(s)	217
FaeI	CATG	2 cut(s)	265, 337
FaqI	GGGAC	2 cut(s)	341, 953
FatI	CATG	2 cut(s)	261, 333
FauI	CCCGC	3 cut(s)	41, 92, 233
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	5 cut(s)	6, 71, 128, 190, 193
FokI	GGATG	4 cut(s)	46, 418, 557, 593
Fsp4HI	GCNGC	5 cut(s)	6, 71, 128, 190, 193
FspBI	CTAG	5 cut(s)	746, 765, 797, 956, 1004
GlaI	GCGC	2 cut(s)	9, 19
GluI	GCNGC	5 cut(s)	6, 71, 128, 190, 193
GsaI	CCCAGC	1 cut(s)	362
HaeII	RGCGCY	1 cut(s)	11
HapII	CCGG	5 cut(s)	144, 177, 228, 447, 656
HgaI	GACGC	2 cut(s)	25, 169
HhaI	GCGC	2 cut(s)	10, 20
Hin1I	GRCGYC	2 cut(s)	8, 180
Hin1II	CATG	2 cut(s)	265, 337
Hin6I	GCGC	2 cut(s)	8, 18
HinP1I	GCGC	2 cut(s)	8, 18
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	6 cut(s)	217, 317, 329, 620, 800, 888
HpaII	CCGG	5 cut(s)	144, 177, 228, 447, 656
HphI	GGTGA	3 cut(s)	382, 436, 613
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188III	TCNNGA	7 cut(s)	214, 268, 656, 676, 797, 825, 993
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	4 cut(s)	41, 135, 185, 188
HpyAV	CCTTC	3 cut(s)	31, 700, 712
HpyCH4III	ACNGT	5 cut(s)	381, 394, 459, 792, 831
HpyCH4IV	ACGT	2 cut(s)	133, 680
HpyCH4V	TGCA	5 cut(s)	405, 685, 742, 847, 883
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 186, 364, 691
HpyF3I	CTNAG	2 cut(s)	633, 910
HpySE526I	ACGT	2 cut(s)	133, 680
Hsp92I	GRCGYC	2 cut(s)	8, 180
Hsp92II	CATG	2 cut(s)	265, 337
HspAI	GCGC	2 cut(s)	8, 18
KasI	GGCGCC	1 cut(s)	7
Kpn2I	TCCGGA	1 cut(s)	655
KspI	CCGCGG	2 cut(s)	128, 241
Kzo9I	GATC	1 cut(s)	529
LmnI	GCTCC	1 cut(s)	372
LweI	GCATC	3 cut(s)	155, 440, 949
MaeI	CTAG	5 cut(s)	746, 765, 797, 956, 1004
MaeII	ACGT	2 cut(s)	133, 680
MaeIII	GTNAC	2 cut(s)	388, 811
MalI	GATC	1 cut(s)	531
MboI	GATC	1 cut(s)	529
MboII	GAAGA	2 cut(s)	147, 883
MluCI	AATT	6 cut(s)	273, 493, 514, 667, 852, 914
Mly113I	GGCGCC	1 cut(s)	8
MlyI	GAGTC	2 cut(s)	211, 323
MmeI	TCCRAC	5 cut(s)	180, 507, 516, 534, 1066
MroI	TCCGGA	1 cut(s)	655
MseI	TTAA	1 cut(s)	1046
MspA1I	CMGCKG	2 cut(s)	127, 240
MspI	CCGG	5 cut(s)	144, 177, 228, 447, 656
MspR9I	CCNGG	2 cut(s)	229, 325
MvaI	CCWGG	1 cut(s)	325
MvnI	CGCG	5 cut(s)	18, 36, 127, 240, 467
MwoI	GCNNNNNNNGC	4 cut(s)	11, 186, 364, 691
NarI	GGCGCC	1 cut(s)	8
NciI	CCSGG	1 cut(s)	229
NdeII	GATC	1 cut(s)	529
NlaIII	CATG	2 cut(s)	265, 337
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	388
NspI	RCATGY	1 cut(s)	265
NspV	TTCGAA	1 cut(s)	257
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 291
PfeI	GAWTC	4 cut(s)	317, 620, 800, 888
PkrI	GCNGC	5 cut(s)	7, 72, 129, 191, 194
PleI	GAGTC	2 cut(s)	211, 323
PluTI	GGCGCC	1 cut(s)	11
PpsI	GAGTC	2 cut(s)	211, 323
PpuMI	RGGWCCY	1 cut(s)	761
Psp5II	RGGWCCY	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	323
PspFI	CCCAGC	1 cut(s)	358
PspGI	CCWGG	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	761
PspPPI	RGGWCCY	1 cut(s)	761
RsaI	GTAC	1 cut(s)	904
RsaNI	GTAC	1 cut(s)	903
SacII	CCGCGG	2 cut(s)	128, 241
SalI	GTCGAC	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	1046
SatI	GCNGC	5 cut(s)	6, 71, 128, 190, 193
Sau3AI	GATC	1 cut(s)	529
Sau96I	GGNCC	1 cut(s)	761
SchI	GAGTC	2 cut(s)	211, 323
ScrFI	CCNGG	2 cut(s)	229, 325
SfaNI	GCATC	3 cut(s)	155, 440, 949
SfoI	GGCGCC	1 cut(s)	9
Sfr303I	CCGCGG	2 cut(s)	128, 241
SfuI	TTCGAA	1 cut(s)	257
SgrBI	CCGCGG	2 cut(s)	128, 241
SgrDI	CGTCGACG	1 cut(s)	182
SinI	GGWCC	1 cut(s)	761
SmlI	CTYRAG	3 cut(s)	53, 266, 974
SmoI	CTYRAG	3 cut(s)	53, 266, 974
Sse9I	AATT	6 cut(s)	273, 493, 514, 667, 852, 914
SspDI	GGCGCC	1 cut(s)	7
SspMI	CTAG	5 cut(s)	746, 765, 797, 956, 1004
StyD4I	CCNGG	2 cut(s)	227, 323
StyI	CCWWGG	2 cut(s)	303, 764
TaaI	ACNGT	5 cut(s)	381, 394, 459, 792, 831
TaiI	ACGT	2 cut(s)	136, 683
TaqI	TCGA	7 cut(s)	183, 215, 234, 257, 285, 498, 826
TaqII	GACCGA	1 cut(s)	522
TasI	AATT	6 cut(s)	273, 493, 514, 667, 852, 914
TauI	GCSGC	5 cut(s)	8, 73, 130, 192, 195
TfiI	GAWTC	4 cut(s)	317, 620, 800, 888
Tru1I	TTAA	1 cut(s)	1046
Tru9I	TTAA	1 cut(s)	1046
TscAI	CASTG	1 cut(s)	462
TseFI	GTSAC	1 cut(s)	388
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	1 cut(s)	350
TspGWI	ACGGA	4 cut(s)	238, 283, 376, 524
TspRI	CASTG	1 cut(s)	462
VpaK11BI	GGWCC	1 cut(s)	761
XapI	RAATTY	3 cut(s)	493, 514, 914
XbaI	TCTAGA	1 cut(s)	796
XceI	RCATGY	1 cut(s)	265
XmaJI	CCTAGG	1 cut(s)	764
XmiI	GTMKAC	1 cut(s)	183
XspI	CTAG	5 cut(s)	746, 765, 797, 956, 1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.