Rh4AG010800

Protein of unknown function (DUF760)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0003339
Physical Location & Seq
Forward (+)
1750640 .. 1750831
192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG010800.1

Sequence Viewer

Length: 192 bp
ATGCTGAAGCGGATTGAGCCGCTTGACAGCTCCGTCATCTCCAAAGGCGTTTCGGATTCCGCTAAGGACTCGATGAAGCAGACCATCTCTACTATGCTGGGATTGCTGCCGTCCGATCAGTTCTCCGTCACCGTTAGGGTTTGCAGAGCTCCCCTTGATCGCCTCCTCGCCTCTTCCATAATCACCGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

63

Amino Acids

6.76

Weight (kDa)

9.1

Isoelectric Point (pI)

45.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 1 - 63 2.5e-14 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 32
AciI CCGC 3 cut(s) 10, 20, 60
AcuI CTGAAG 1 cut(s) 26
AluBI AGCT 2 cut(s) 30, 149
AluI AGCT 2 cut(s) 30, 149
Alw21I GWGCWC 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 106
AsuC2I CCSGG 1 cut(s) 187
AsuHPI GGTGA 2 cut(s) 121, 175
BanII GRGCYC 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 93
BccI CCATC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 94
BcnI CCSGG 1 cut(s) 187
BisI GCNGC 2 cut(s) 20, 107
BlsI GCNGC 2 cut(s) 21, 108
Bme1390I CCNGG 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 187
Bpu10I CCTNAGC 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 187
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 93
BseYI CCCAGC 1 cut(s) 97
BsiHKAI GWGCWC 1 cut(s) 151
BsiSI CCGG 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 2 cut(s) 115, 157
BspACI CCGC 3 cut(s) 10, 20, 60
BssMI GATC 2 cut(s) 115, 157
Bst4CI ACNGT 1 cut(s) 133
Bst6I CTCTTC 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 63
BstKTI GATC 2 cut(s) 118, 160
BstMBI GATC 2 cut(s) 115, 157
BstMWI GCNNNNNNNGC 2 cut(s) 16, 103
BstSCI CCNGG 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 93
CviJI RGCY 3 cut(s) 19, 30, 149
CviKI_1 RGCY 3 cut(s) 19, 30, 149
DdeI CTNAG 1 cut(s) 63
DpnI GATC 2 cut(s) 117, 159
DpnII GATC 2 cut(s) 115, 157
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
Ecl136II GAGCTC 1 cut(s) 149
Eco24I GRGCYC 1 cut(s) 151
Eco53kI GAGCTC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 26
EcoICRI GAGCTC 1 cut(s) 149
EcoT38I GRGCYC 1 cut(s) 151
FaiI YATR 2 cut(s) 95, 179
Fnu4HI GCNGC 2 cut(s) 20, 107
FriOI GRGCYC 1 cut(s) 151
Fsp4HI GCNGC 2 cut(s) 20, 107
GluI GCNGC 2 cut(s) 20, 107
GsaI CCCAGC 1 cut(s) 101
HapII CCGG 1 cut(s) 186
HinfI GANTC 2 cut(s) 56, 68
HpaII CCGG 1 cut(s) 186
HphI GGTGA 2 cut(s) 121, 175
Hpy188I TCNGA 2 cut(s) 55, 115
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4V TGCA 1 cut(s) 144
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 103
HpyF3I CTNAG 1 cut(s) 63
Kzo9I GATC 2 cut(s) 115, 157
LmnI GCTCC 2 cut(s) 35, 154
LpnPI CCDG 1 cut(s) 83
Lsp1109I GCAGC 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 127
MalI GATC 2 cut(s) 117, 159
MboI GATC 2 cut(s) 115, 157
MboII GAAGA 1 cut(s) 165
MhlI GDGCHC 1 cut(s) 151
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 3 cut(s) 173, 176, 181
MspI CCGG 1 cut(s) 186
MspR9I CCNGG 1 cut(s) 187
MwoI GCNNNNNNNGC 2 cut(s) 16, 103
NciI CCSGG 1 cut(s) 187
NdeII GATC 2 cut(s) 115, 157
NmuCI GTSAC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 2 cut(s) 21, 108
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
Psp124BI GAGCTC 1 cut(s) 151
PspFI CCCAGC 1 cut(s) 97
SacI GAGCTC 1 cut(s) 151
SatI GCNGC 2 cut(s) 20, 107
Sau3AI GATC 2 cut(s) 115, 157
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 1 cut(s) 187
SduI GDGCHC 1 cut(s) 151
SetI ASST 2 cut(s) 32, 151
SgeI CNNG 5 cut(s) 35, 82, 110, 167, 179
SsiI CCGC 3 cut(s) 10, 20, 60
SstI GAGCTC 1 cut(s) 151
StyD4I CCNGG 1 cut(s) 185
TaaI ACNGT 1 cut(s) 133
TaqI TCGA 1 cut(s) 71
TauI GCSGC 1 cut(s) 22
TfiI GAWTC 1 cut(s) 56
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 89
TspGWI ACGGA 2 cut(s) 22, 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.