Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003339

Physical Location & Seq

Genomic Coordinates Forward (+)

4697738 .. 4700315

Gene Structure 2578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00081690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCGGCCGCAGCTCGGGCTTTCACTCTCTCTCGCCTCACCGACCTGTCACTCAAGCCCCGCCACCCACAACCTCCACCGCCTCCCGTTTCCCGCCACCACCTCCTCGCCCGCCCATTACTCCCCTCGTTCCGCGCCCAACGGCGTCGTTTGGCCTGCTCGGCTTCCACAATCCGATGCCTCATCTCCGGCGTCGACGGCGGCGGCGTGTCCGACGAGTTCGTCTCGACGCGGAAGTCCGGCTTCGATCGCGGATTCTCTGTTATCGCCAATATGCTGAAGCGGATTGAGCCGCTTGACAGCTCCGTTATCTCCAAAGGTGTTTCCGATTCCGCTAAGGACTCGATGAAGCAGACCATCTCTACTATGCTGGGATTGCTGCCGTCCGATCAGTTCTCCGTCACCGTTAGGGTTTGCAGAGCGCCTCTTGATCGCCTCCTCGCCTCTTCCATAATCACCGGGTATACACTGTGGAACGCGGAATATCGGATATCGTTGATGAGGAATTTCGACATTTCTACGGAGAATTCTGTGGCTTTGGATGGGTTGAAGATCGATGGGAGTTCGGAGACGGTGGATGGTGAGGAAAGGGGTAGCGAGAATGGATTTGGGGCGAGTAATCAATACCTGGGCTCAACAACTCCTCAAGTTTTCGGGGATTTGTCTCCGGAGGCTTTGAATTACATCCAGAGGTTGCAATCAGAGTTAACTAATGTTAAGGAGGAACTGAAAGCTCAAAAGCAGGAAAATATGCGATTAGAATATGACACAGGACACAGAAATGATTTGTTGGATTATCTCCGGTCATTGGATTCTAGAATGGTGACTGAGCTATCTCGGCCCTCATCATTAGAGGTGGAGGAGATTATACACCAACTTGTTCAAAATATATTGCAGAGATTCTTCAAAGATGGAGAATCCTCAGAATTCGAGGAAGATTTAGTTAAAGCGAATATAGAGAATGTTCTAGATTCTGATGGCGAACTTTGTGATACTGTAGGAACTTCACGAGATTACCTAGCGAAGCTTCTTTTCTGGTGTATGTTATTAGGTCATCATTTGAGAGGCTTGGAGAACAGATTACATTTGAGTTGTGTTGTTGGATTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

370

Amino Acids

41.15

Weight (kDa)

5.71

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	91 - 169	1.2e-21	Protein of unknown function (DUF760)
DUF760	PF05542	262 - 366	4.3e-22	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14970
fragaria_vesca	FvH4_6g49830 FvH4_6g49830 FvH4_6g49830 FvH4_6g49830
malus_domestica	MD09G1041100.v1.1 MD17G1042400.v1.1
prunus_persica	Prupe.3G276600_v2.0.a1 Prupe.3G276600_v2.0.a1
pyrus_communis	pycom17g03800
rosa_chinensis	RchiOBHm_Chr2g0169981 RchiOBHm_Chr4g0386121 RchiOBHm_Chr4g0386261 RchiOBHm_Chr4g0386271
rosa_laevigata	RLG00000021916
rosa_multiflora	Rmu_sc0002862.1_g000014 Rmu_sc0003415.1_g000008 Rmu_sc0013078.1_g000018 Rmu_ssc0000389.1_g000006
rosa_roxburghii	Rroxscaffold_2G00081690 Rroxscaffold_5G00333850
rosa_rugosa	Rorug02G0544900
rosa_samantha	Rh2AG616900 Rh2CG598000 Rh2DG639900 Rh3CG265700 Rh4AG010800 Rh4BG007900 Rh4DG118700 Rh5DG240500 Rh7DG285000 Rh7DG341500
rosa_wichuraiana	Rw2G029160 Rw2G034420 Rw2G051100 Rw3G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	221, 235
AccI	GTMKAC	2 cut(s)	195, 464
AccII	CGCG	4 cut(s)	135, 232, 252, 479
AccIII	TCCGGA	1 cut(s)	667
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	3 cut(s)	505, 526, 926
AcuI	CTGAAG	1 cut(s)	299
AcyI	GRCGYC	2 cut(s)	145, 192
AfiI	CCNNNNNNNGG	2 cut(s)	15, 808
AgsI	TTSAA	4 cut(s)	550, 679, 884, 907
AjnI	CCWGG	1 cut(s)	627
AluBI	AGCT	5 cut(s)	14, 303, 734, 832, 1027
AluI	AGCT	5 cut(s)	14, 303, 734, 832, 1027
Alw26I	GTCTC	3 cut(s)	229, 563, 669
Ama87I	CYCGRG	1 cut(s)	15
Aor13HI	TCCGGA	1 cut(s)	667
AoxI	GGCC	3 cut(s)	6, 153, 839
ApeKI	GCWGC	2 cut(s)	11, 379
ApoI	RAATTY	3 cut(s)	505, 526, 926
AspLEI	GCGC	2 cut(s)	137, 424
AspS9I	GGNCC	1 cut(s)	840
AsuC2I	CCSGG	1 cut(s)	460
AsuHPI	GGTGA	5 cut(s)	31, 394, 448, 593, 835
AvaI	CYCGRG	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	635
BauI	CACGAG	1 cut(s)	1008
BbvI	GCAGC	2 cut(s)	23, 366
BccI	CCATC	6 cut(s)	365, 536, 551, 572, 905, 971
BceAI	ACGGC	3 cut(s)	158, 214, 367
BciT130I	CCWGG	1 cut(s)	629
BcnI	CCSGG	1 cut(s)	460
BcoDI	GTCTC	3 cut(s)	229, 563, 669
BfaI	CTAG	3 cut(s)	816, 968, 1019
BfmI	CTRYAG	1 cut(s)	996
BfoI	RGCGCY	1 cut(s)	425
BglI	GCCNNNNNGGC	1 cut(s)	161
BisI	GCNGC	7 cut(s)	6, 9, 12, 202, 205, 293, 380
BlsI	GCNGC	7 cut(s)	7, 10, 13, 203, 206, 294, 381
Bme1390I	CCNGG	2 cut(s)	460, 629
BmeT110I	CYCGRG	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	840
BmrFI	CCNGG	2 cut(s)	460, 629
BmsI	GCATC	1 cut(s)	167
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
Bpu10I	CCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	2 cut(s)	38, 630
BpuMI	CCSGG	1 cut(s)	460
Bsa29I	ATCGAT	1 cut(s)	555
BsaHI	GRCGYC	2 cut(s)	145, 192
BsaJI	CCNNGG	1 cut(s)	628
BsaWI	WCCGGW	2 cut(s)	667, 801
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 808
BseAI	TCCGGA	1 cut(s)	667
BseBI	CCWGG	1 cut(s)	629
BseCI	ATCGAT	1 cut(s)	555
BseDI	CCNNGG	1 cut(s)	628
BseGI	GGATG	3 cut(s)	547, 583, 684
BseLI	CCNNNNNNNGG	2 cut(s)	15, 808
BseMII	CTCAG	2 cut(s)	819, 936
BseRI	GAGGAG	4 cut(s)	95, 428, 633, 875
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	2 cut(s)	23, 366
BseYI	CCCAGC	1 cut(s)	370
Bsh1236I	CGCG	4 cut(s)	135, 232, 252, 479
Bsh1285I	CGRYCG	2 cut(s)	9, 250
BshFI	GGCC	3 cut(s)	8, 155, 841
BshVI	ATCGAT	1 cut(s)	555
BsiEI	CGRYCG	2 cut(s)	9, 250
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	5 cut(s)	189, 240, 459, 668, 802
BslI	CCNNNNNNNGG	2 cut(s)	15, 808
BsmAI	GTCTC	3 cut(s)	229, 563, 669
BsmBI	CGTCTC	2 cut(s)	229, 563
BsnI	GGCC	3 cut(s)	8, 155, 841
BsoBI	CYCGRG	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	635
Bsp13I	TCCGGA	1 cut(s)	667
Bsp143I	GATC	4 cut(s)	247, 388, 430, 552
BspANI	GGCC	3 cut(s)	8, 155, 841
BspCNI	CTCAG	2 cut(s)	820, 935
BspDI	ATCGAT	1 cut(s)	555
BspEI	TCCGGA	1 cut(s)	667
BspFNI	CGCG	4 cut(s)	135, 232, 252, 479
BssECI	CCNNGG	1 cut(s)	628
BssMI	GATC	4 cut(s)	247, 388, 430, 552
BssNAI	GTATAC	1 cut(s)	465
BssNI	GRCGYC	2 cut(s)	145, 192
BssSI	CACGAG	1 cut(s)	1008
Bst1107I	GTATAC	1 cut(s)	465
Bst2BI	CACGAG	1 cut(s)	1008
Bst2UI	CCWGG	1 cut(s)	629
Bst4CI	ACNGT	4 cut(s)	406, 471, 574, 997
Bst6I	CTCTTC	1 cut(s)	451
BstACI	GRCGYC	2 cut(s)	145, 192
BstC8I	GCNNGC	2 cut(s)	112, 157
BstDEI	CTNAG	3 cut(s)	336, 828, 922
BstF5I	GGATG	3 cut(s)	547, 583, 684
BstFNI	CGCG	4 cut(s)	135, 232, 252, 479
BstH2I	RGCGCY	1 cut(s)	425
BstHHI	GCGC	2 cut(s)	137, 424
BstKTI	GATC	4 cut(s)	250, 391, 433, 555
BstMAI	GTCTC	3 cut(s)	229, 563, 669
BstMBI	GATC	4 cut(s)	247, 388, 430, 552
BstMCI	CGRYCG	2 cut(s)	9, 250
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 17, 161, 198, 249, 289, 376, 838
BstNI	CCWGG	1 cut(s)	629
BstSCI	CCNGG	2 cut(s)	458, 627
BstSFI	CTRYAG	1 cut(s)	996
BstUI	CGCG	4 cut(s)	135, 232, 252, 479
BstV1I	GCAGC	2 cut(s)	23, 366
BstZ17I	GTATAC	1 cut(s)	465
BstZI	CGGCCG	1 cut(s)	6
Bsu15I	ATCGAT	1 cut(s)	555
BsuRI	GGCC	3 cut(s)	8, 155, 841
BsuTUI	ATCGAT	1 cut(s)	555
BtsCI	GGATG	3 cut(s)	547, 583, 684
BtsIMutI	CAGTG	1 cut(s)	467
Cac8I	GCNNGC	2 cut(s)	112, 157
CciNI	GCGGCCGC	1 cut(s)	6
CfoI	GCGC	2 cut(s)	137, 424
Cfr13I	GGNCC	1 cut(s)	840
ClaI	ATCGAT	1 cut(s)	555
CseI	GACGC	3 cut(s)	134, 181, 238
DdeI	CTNAG	3 cut(s)	336, 828, 922
DpnI	GATC	4 cut(s)	249, 390, 432, 554
DpnII	GATC	4 cut(s)	247, 388, 430, 552
DrdI	GACNNNNNNGTC	2 cut(s)	221, 235
DseDI	GACNNNNNNGTC	2 cut(s)	221, 235
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	451
EarI	CTCTTC	1 cut(s)	451
EclXI	CGGCCG	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	635
Eco32I	GATATC	1 cut(s)	492
Eco52I	CGGCCG	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	299
Eco88I	CYCGRG	1 cut(s)	15
EcoRI	GAATTC	2 cut(s)	526, 926
EcoRII	CCWGG	1 cut(s)	627
EcoRV	GATATC	1 cut(s)	492
EcoT38I	GRGCYC	1 cut(s)	635
Esp3I	CGTCTC	2 cut(s)	229, 563
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FauI	CCCGC	3 cut(s)	68, 101, 119
FblI	GTMKAC	2 cut(s)	195, 464
Fnu4HI	GCNGC	7 cut(s)	6, 9, 12, 202, 205, 293, 380
FokI	GGATG	3 cut(s)	554, 590, 671
FriOI	GRGCYC	1 cut(s)	635
Fsp4HI	GCNGC	7 cut(s)	6, 9, 12, 202, 205, 293, 380
FspBI	CTAG	3 cut(s)	816, 968, 1019
GlaI	GCGC	2 cut(s)	136, 423
GluI	GCNGC	7 cut(s)	6, 9, 12, 202, 205, 293, 380
GsaI	CCCAGC	1 cut(s)	374
HaeII	RGCGCY	1 cut(s)	425
HaeIII	GGCC	3 cut(s)	8, 155, 841
HapII	CCGG	5 cut(s)	189, 240, 459, 668, 802
HgaI	GACGC	3 cut(s)	134, 181, 238
HhaI	GCGC	2 cut(s)	137, 424
Hin1I	GRCGYC	2 cut(s)	145, 192
Hin6I	GCGC	2 cut(s)	135, 422
HinP1I	GCGC	2 cut(s)	135, 422
HincII	GTYRAC	2 cut(s)	196, 708
HindII	GTYRAC	2 cut(s)	196, 708
HindIII	AAGCTT	1 cut(s)	1025
HinfI	GANTC	7 cut(s)	255, 329, 341, 812, 900, 917, 971
HpaI	GTTAAC	1 cut(s)	708
HpaII	CCGG	5 cut(s)	189, 240, 459, 668, 802
HphI	GGTGA	5 cut(s)	31, 394, 448, 593, 835
Hpy166II	GTNNAC	3 cut(s)	196, 465, 708
Hpy188I	TCNGA	9 cut(s)	176, 214, 328, 388, 489, 568, 703, 925, 976
Hpy188III	TCNNGA	7 cut(s)	226, 428, 668, 688, 816, 968, 1008
Hpy8I	GTNNAC	3 cut(s)	196, 465, 708
Hpy99I	CGWCG	5 cut(s)	150, 197, 200, 218, 232
HpyCH4III	ACNGT	4 cut(s)	406, 471, 574, 997
HpyCH4V	TGCA	3 cut(s)	417, 697, 895
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 17, 161, 198, 249, 289, 376, 838
HpyF3I	CTNAG	3 cut(s)	336, 828, 922
Hsp92I	GRCGYC	2 cut(s)	145, 192
HspAI	GCGC	2 cut(s)	135, 422
Kpn2I	TCCGGA	1 cut(s)	667
KspAI	GTTAAC	1 cut(s)	708
Kzo9I	GATC	4 cut(s)	247, 388, 430, 552
LmnI	GCTCC	1 cut(s)	308
Lsp1109I	GCAGC	2 cut(s)	23, 366
LweI	GCATC	1 cut(s)	167
MaeI	CTAG	3 cut(s)	816, 968, 1019
MaeIII	GTNAC	3 cut(s)	48, 400, 823
MalI	GATC	4 cut(s)	249, 390, 432, 554
MboI	GATC	4 cut(s)	247, 388, 430, 552
MboII	GAAGA	4 cut(s)	438, 562, 895, 947
MhlI	GDGCHC	1 cut(s)	635
MluCI	AATT	4 cut(s)	505, 526, 679, 926
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	3 cut(s)	237, 771, 1081
MroI	TCCGGA	1 cut(s)	667
MseI	TTAA	3 cut(s)	707, 717, 945
MslI	CAYNNNNRTG	1 cut(s)	780
MspI	CCGG	5 cut(s)	189, 240, 459, 668, 802
MspR9I	CCNGG	2 cut(s)	460, 629
MvaI	CCWGG	1 cut(s)	629
MvnI	CGCG	4 cut(s)	135, 232, 252, 479
MwoI	GCNNNNNNNGC	8 cut(s)	11, 17, 161, 198, 249, 289, 376, 838
NciI	CCSGG	1 cut(s)	460
NdeII	GATC	4 cut(s)	247, 388, 430, 552
NmeAIII	GCCGAG	2 cut(s)	140, 817
NmuCI	GTSAC	3 cut(s)	48, 400, 823
NotI	GCGGCCGC	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PfeI	GAWTC	6 cut(s)	255, 329, 812, 900, 917, 971
PkrI	GCNGC	7 cut(s)	7, 10, 13, 203, 206, 294, 381
Ple19I	CGATCG	1 cut(s)	250
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	627
PspFI	CCCAGC	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	627
PspPI	GGNCC	1 cut(s)	840
PvuI	CGATCG	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	780
SalI	GTCGAC	1 cut(s)	194
SaqAI	TTAA	3 cut(s)	707, 717, 945
SatI	GCNGC	7 cut(s)	6, 9, 12, 202, 205, 293, 380
Sau3AI	GATC	4 cut(s)	247, 388, 430, 552
Sau96I	GGNCC	1 cut(s)	840
SchI	GAGTC	1 cut(s)	335
ScrFI	CCNGG	2 cut(s)	460, 629
SduI	GDGCHC	1 cut(s)	635
SfaNI	GCATC	1 cut(s)	167
SfcI	CTRYAG	1 cut(s)	996
SgrDI	CGTCGACG	1 cut(s)	194
SmiMI	CAYNNNNRTG	1 cut(s)	780
SmlI	CTYRAG	2 cut(s)	53, 645
SmoI	CTYRAG	2 cut(s)	53, 645
Sse9I	AATT	4 cut(s)	505, 526, 679, 926
SspMI	CTAG	3 cut(s)	816, 968, 1019
StyD4I	CCNGG	2 cut(s)	458, 627
TaaI	ACNGT	4 cut(s)	406, 471, 574, 997
TaqI	TCGA	7 cut(s)	195, 227, 246, 344, 510, 555, 930
TasI	AATT	4 cut(s)	505, 526, 679, 926
TauI	GCSGC	5 cut(s)	8, 11, 204, 207, 295
TfiI	GAWTC	6 cut(s)	255, 329, 812, 900, 917, 971
Tru1I	TTAA	3 cut(s)	707, 717, 945
Tru9I	TTAA	3 cut(s)	707, 717, 945
TscAI	CASTG	1 cut(s)	474
TseFI	GTSAC	3 cut(s)	48, 400, 823
TseI	GCWGC	2 cut(s)	11, 379
Tsp45I	GTSAC	3 cut(s)	48, 400, 823
TspDTI	ATGAA	1 cut(s)	362
TspGWI	ACGGA	3 cut(s)	295, 388, 536
TspRI	CASTG	1 cut(s)	474
XapI	RAATTY	3 cut(s)	505, 526, 926
XbaI	TCTAGA	2 cut(s)	815, 967
XmiI	GTMKAC	2 cut(s)	195, 464
XspI	CTAG	3 cut(s)	816, 968, 1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.