Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003339

Physical Location & Seq

Genomic Coordinates Reverse (-)

67414950 .. 67424722

Gene Structure 9773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0544900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2964 bp

ATGGATTCGGGGAGGCAGGTTTTCACGGTGGACCTTCTAGAAAGGTACGCCGCGAAGGGACGCGGAGTCATCACGTGTATGGCGGCCGGAAACGACGTCATTGTGCTCGGAACTAGTAAAGGATGGATAATCCGGCACGATTTTGGGGTCGGCGATTCGTTCGATATTGATCTCTCTGCGGGTCGTCCCGGGGAGCATTCAATTCATAGAGTTTTTGTTGATCCTGGAGGGAGCCACTGTATTGCCAACATTTCTGGTACCGGGGGTGCTGATACTTTCTATACTCATGCGAAATGGAGCAAGCCGCGTCCTTTGGCCAAGTTGAAAGGTCTTGTTGTGAATGCTGTTGCCTGGAATAGACAGCTGATAACAGAAGTTTCGACAAAGGAAGTTATTCTCGGTACAGACAATGGCCAACTTTATGAGATTGCTGTGGATGAGAAGGATAAGAAGGAGAAGTATGTGAAGTTTCTGTATGAACTAACTGAACTTCCAGAGGCTTTCATGAGTTTGCAGATGGAAACTGCGACAATTCTGAATGGAACTAGATACTATGTGATGGCTGTTACTCCTACACGACTGTATTCTTATACGGGAATTGGATTGTTGGATGCTATTTTTGCTAGTTACTTGGAGCATCCGGTGCGTTTCATGGAACTTCCTGGTGAAATACCTAACAGTGAATTGCATTTCTATATCAAGCAAAGACGAGCAGTACATTTTGCATGGCTTTCTGGAGCTGGAATCTATAATGGCGGTTTAAATTTTGGTTCTCAGCATAGTTCTTCAACTGGAGATGAAAATTTTGTGGAGAACAAGGCTCTTCTGGCATATTCAAAATTGTCTGAGAGTACTGAAGTTGCGGTGCCCAGTTCTATGGCCGTTTCGGAATTTCATTTCTTGCTTCTTATCGGGAATAAGGTTAAGGTTGTGAATAGAATAAGTGAGCAAATTATAGAGGAACTTCAGTTTGATCAAACATCCGAATCAGCTTCAAGGGGTATCATTGGATTATGTAGTGATGCCACAGCTGGACTGTTCTATGCTTATGACCAGAACTCTGTATTTCAGGTTTCTGTTAATGATGAAGGCCGAGATATGTGGAAAGTTTATCTGGACATGAAAGAGTATGCTGCTGCTTTGGCAAATTGTCGCGACCCACTTCAGAGGGACCAAGTATATTTAGTACAGGCTGAGGCTGCATTTGCCTCAAAAGATTATCTCAGAGCAGCATCTTTCTATGCAAAGATAAACTACATATTATCATTCGAGGAGATCACTCTGAAGTTTATCACTGTCAATGAACAGGACGCTTTGAGAACCTTTTTGTTACGGAAACTTGACTGTCTTGCGAAGGATGACAAGTGCCAAATAACCATGATTTCAACGTGGGCAACTGAATTGTACTTGGATAAGATAAATCGCCTACTATTAGAAGATGACACTGCATTGGAAAATCGGAATTCAGAGTATCAATCGATTATTAAAGAGTTTCGTGCATTTCTGAGTGACTCCAAGGATGTATTGGATGAAGCAACCACGATGAGACTATTAGAAAGTTATGGTCGAGTTGAAGAGTTGGTATTTTTTGCTAGTCTGAAGGAACAATATGAAATTGTAGTGCACCATTATATTCAGCAAGGAGAGGCGAAGAAAGCATTGGAGGTTCTTCAAAAACCTTCTGTTCCTATTGATCTTCAGTATAAGTTTGCTCCTGACCTAATCATGCTTGATGCATACGAAGCTGTGGAGTCATGGATGGCGACGAACAACCTCAACCCTAGGAAACTCATTCCGGCAATGATGCGTTATTCGAGTGAACCACATGCAAAAAATGAAACACATGAAGTCATCAAATACTTGGAATATTGTGTTCACCGTTTGCACAATGAGGACCCTGGAGTTCACAACTTGCTTTTATCACTATATGCCAAGCAGGAAGATGATAGTGCACTTTTGCGTTTCCTACAATTCAAGTTTGGAAAAGGACGGGAAAGTGGCCCTGAATTCTTCTATGATCCCAAGTATGCTTTACGCCTTTGCCTTAAAGAAAAGCGAATGCGTGCCTGCGTTCATATATACAGTATGATGTCCATGCATGAAGAAGCAGTTGCTCTCGCCCTACAGGTTGATCCTGAGCTTGCTATGGCTGAAGCTGACAAGGTTGAAGACGATGAGGACTTGAGAAAGAAGCTCTGGCTCATGGTTGCGAAGCATGTAATAGAACAGGAGAAGGGAGCTAAGAGGGAGAACATACGGAAGGCAATAGCGTTTCTTAAAGAAACAGATGGCCTTTTAAAGATAGAGGATATATTACCATTCTTTCCGGACTTTGCCCTGATTGATGACTTTAAGGAGGCAATTTGCTCATCATTAGAGGATTACAATAATCAAATCGAACAACTGAAACAAGAGATGAATGATGCGACACATGGTGCCGACAACATCAGAAATGACATTAGTGCTCTTGCTCAAAGATATGCTGTGATTGATCGTGATGAAGAATGTGGGGTGTGTCGGCGTAAAATTTTAACTGTTGGTAGGGAGTATCAGATGACTAGGGGCTATTCATCAGTAGGGCAAATGGCCCCCTTTTATGTCTTTCCTTGTGGACACGCCTTCCATGCACAATGCCTGATTGCCCATGTTACACGTAGCACAAATGAAGCTCAAGCAGAGTATATTCTGGATCTGCAGAAGCAACTCACTCTATTGGACGGAGAGGCTAGGAAGGATTCAAATGGTCCCCTGAGTGACGAAACCATAACAAGCATGGCCCCAGTAGACAAGCTCCGATCACAGTTGGATGATGCTGTGGCCAGCGAATGCCCATTTTGTGGGGACTTAATGATTCGCGAGATCTCTCTGCCTTTCATTCTTCCTGAGGAACAGTTTCAGAGTACTTCATGGGATATACAATCGCGTAATCTTGGAAACCAGAGGAGTCTTTCTTTGACTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

987

Amino Acids

111.87

Weight (kDa)

5.17

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pep3_Vps18	PF05131	18 - 360	7.6e-82	Pep3/Vps18/deep orange beta-propeller domain
Clathrin	PF00637	611 - 744	8e-08	Region in Clathrin and VPS
VPS18_RING_C	PF26148	865 - 952	2e-06	VPS18 RING C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14970
fragaria_vesca	FvH4_6g49830 FvH4_6g49830 FvH4_6g49830 FvH4_6g49830
malus_domestica	MD09G1041100.v1.1 MD17G1042400.v1.1
prunus_persica	Prupe.3G276600_v2.0.a1 Prupe.3G276600_v2.0.a1
pyrus_communis	pycom17g03800
rosa_chinensis	RchiOBHm_Chr2g0169981 RchiOBHm_Chr4g0386121 RchiOBHm_Chr4g0386261 RchiOBHm_Chr4g0386271
rosa_laevigata	RLG00000021916
rosa_multiflora	Rmu_sc0002862.1_g000014 Rmu_sc0003415.1_g000008 Rmu_sc0013078.1_g000018 Rmu_ssc0000389.1_g000006
rosa_roxburghii	Rroxscaffold_2G00081690 Rroxscaffold_5G00333850
rosa_rugosa	Rorug02G0544900
rosa_samantha	Rh2AG616900 Rh2CG598000 Rh2DG639900 Rh3CG265700 Rh4AG010800 Rh4BG007900 Rh4DG118700 Rh5DG240500 Rh7DG285000 Rh7DG341500
rosa_wichuraiana	Rw2G029160 Rw2G034420 Rw2G051100 Rw3G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	99
Acc36I	ACCTGC	1 cut(s)	7
Acc65I	GGTACC	1 cut(s)	257
AccB1I	GGYRCC	3 cut(s)	257, 865, 2435
AccB7I	CCANNNNNTGG	1 cut(s)	2837
AccI	GTMKAC	1 cut(s)	2784
AccII	CGCG	6 cut(s)	53, 63, 307, 1155, 2856, 2923
AccIII	TCCGGA	1 cut(s)	2326
AciI	CCGC	7 cut(s)	51, 63, 83, 179, 305, 756, 863
AclWI	GGATC	4 cut(s)	215, 2012, 2126, 2697
AcoI	YGGCCR	5 cut(s)	84, 315, 412, 879, 2817
AcsI	RAATTY	6 cut(s)	763, 802, 890, 1462, 2006, 2526
AcuI	CTGAAG	7 cut(s)	876, 950, 1148, 1304, 1619, 1682, 2172
AcvI	CACGTG	1 cut(s)	75
AcyI	GRCGYC	1 cut(s)	96
AdeI	CACNNNGTG	1 cut(s)	2435
AfaI	GTAC	8 cut(s)	47, 259, 403, 717, 853, 1188, 1406, 2902
AfiI	CCNNNNNNNGG	1 cut(s)	2837
AflIII	ACRYGT	2 cut(s)	74, 2651
AhdI	GACNNNNNGTC	1 cut(s)	65
AhlI	ACTAGT	1 cut(s)	113
AjnI	CCWGG	4 cut(s)	223, 350, 661, 1897
AjuI	GAANNNNNNNTTGG	2 cut(s)	1643, 1675
Alw21I	GWGCWC	4 cut(s)	108, 1626, 1954, 2467
Alw26I	GTCTC	1 cut(s)	1540
Alw44I	GTGCAC	2 cut(s)	1622, 1950
AlwI	GGATC	4 cut(s)	215, 2012, 2126, 2697
Ama87I	CYCGRG	1 cut(s)	188
Aor13HI	TCCGGA	1 cut(s)	2326
ApaLI	GTGCAC	2 cut(s)	1622, 1950
ApeKI	GCWGC	4 cut(s)	1133, 1136, 1199, 1229
ApoI	RAATTY	6 cut(s)	763, 802, 890, 1462, 2006, 2526
Asp700I	GAANNNNTTC	2 cut(s)	393, 2892
Asp718I	GGTACC	1 cut(s)	257
AspA2I	CCTAGG	1 cut(s)	1781
AspS9I	GGNCC	7 cut(s)	31, 1171, 1894, 2000, 2587, 2744, 2776
AsuC2I	CCSGG	3 cut(s)	189, 190, 262
AsuHPI	GGTGA	2 cut(s)	677, 1868
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	4 cut(s)	31, 1171, 1894, 2744
AvrII	CCTAGG	1 cut(s)	1781
AxyI	CCTNAGG	1 cut(s)	2883
BaeGI	GKGCMC	3 cut(s)	870, 1626, 1954
BalI	TGGCCA	3 cut(s)	317, 414, 2819
BanI	GGYRCC	3 cut(s)	257, 865, 2435
BbrPI	CACGTG	1 cut(s)	75
BbsI	GAAGAC	1 cut(s)	2175
Bbv12I	GWGCWC	4 cut(s)	108, 1626, 1954, 2467
BbvCI	CCTCAGC	1 cut(s)	1194
BbvI	GCAGC	4 cut(s)	1120, 1123, 1186, 1241
BccI	CCATC	5 cut(s)	117, 511, 553, 1753, 2282
BceAI	ACGGC	1 cut(s)	866
BciT130I	CCWGG	4 cut(s)	225, 352, 663, 1899
BclI	TGATCA	1 cut(s)	973
BcnI	CCSGG	3 cut(s)	189, 190, 262
BcoDI	GTCTC	1 cut(s)	1540
BcuI	ACTAGT	1 cut(s)	113
BfaI	CTAG	8 cut(s)	38, 114, 546, 624, 1593, 1782, 2559, 2727
BfmI	CTRYAG	2 cut(s)	2123, 2693
BfuAI	ACCTGC	1 cut(s)	7
BglII	AGATCT	1 cut(s)	2859
BisI	GCNGC	7 cut(s)	51, 84, 305, 1134, 1137, 1200, 1230
BlnI	CCTAGG	1 cut(s)	1781
BlsI	GCNGC	7 cut(s)	52, 85, 306, 1135, 1138, 1201, 1231
BmcAI	AGTACT	2 cut(s)	853, 2902
Bme1390I	CCNGG	7 cut(s)	189, 190, 225, 262, 352, 663, 1899
Bme18I	GGWCC	4 cut(s)	31, 1171, 1894, 2744
BmeRI	GACNNNNNGTC	1 cut(s)	65
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	7 cut(s)	31, 1171, 1894, 2000, 2587, 2744, 2776
BmiI	GGNNCC	9 cut(s)	233, 259, 867, 1172, 1896, 2437, 2589, 2746, 2778
BmrFI	CCNGG	7 cut(s)	189, 190, 225, 262, 352, 663, 1899
BmrI	ACTGGG	2 cut(s)	864, 2774
BmsI	GCATC	8 cut(s)	601, 646, 1012, 1241, 1723, 1794, 2413, 2800
BmuI	ACTGGG	2 cut(s)	864, 2774
BpiI	GAAGAC	1 cut(s)	2175
BpmI	CTGGAG	4 cut(s)	246, 756, 813, 1920
Bpu10I	CCTNAGC	2 cut(s)	1194, 2136
BpuEI	CTTGAG	2 cut(s)	2203, 2655
BpuMI	CCSGG	3 cut(s)	189, 190, 262
Bsa29I	ATCGAT	1 cut(s)	1478
BsaAI	YACGTR	2 cut(s)	75, 2654
BsaBI	GATNNNNATC	1 cut(s)	168
BsaHI	GRCGYC	1 cut(s)	96
BsaJI	CCNNGG	6 cut(s)	188, 189, 261, 1515, 1781, 1897
BsaWI	WCCGGW	2 cut(s)	640, 2326
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bsc4I	CCNNNNNNNGG	1 cut(s)	2837
Bse1I	ACTGG	3 cut(s)	796, 870, 2780
Bse21I	CCTNAGG	1 cut(s)	2883
Bse3DI	GCAATG	1 cut(s)	1806
Bse8I	GATNNNNATC	1 cut(s)	168
BseAI	TCCGGA	1 cut(s)	2326
BseBI	CCWGG	4 cut(s)	225, 352, 663, 1899
BseCI	ATCGAT	1 cut(s)	1478
BseDI	CCNNGG	6 cut(s)	188, 189, 261, 1515, 1781, 1897
BseJI	GATNNNNATC	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	2837
BseMI	GCAATG	1 cut(s)	1806
BseMII	CTCAG	8 cut(s)	788, 837, 1185, 1237, 1496, 2127, 2741, 2874
BseNI	ACTGG	3 cut(s)	796, 870, 2780
BseRI	GAGGAG	2 cut(s)	1286, 2956
BseSI	GKGCMC	3 cut(s)	870, 1626, 1954
BseX3I	CGGCCG	1 cut(s)	84
BseXI	GCAGC	4 cut(s)	1120, 1123, 1186, 1241
Bsh1236I	CGCG	6 cut(s)	53, 63, 307, 1155, 2856, 2923
Bsh1285I	CGRYCG	1 cut(s)	87
BshNI	GGYRCC	3 cut(s)	257, 865, 2435
BshVI	ATCGAT	1 cut(s)	1478
BsiEI	CGRYCG	1 cut(s)	87
BsiHKAI	GWGCWC	4 cut(s)	108, 1626, 1954, 2467
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	7 cut(s)	87, 133, 189, 261, 641, 1796, 2327
BslFI	GGGAC	5 cut(s)	72, 171, 1184, 2730, 2855
BslI	CCNNNNNNNGG	1 cut(s)	2837
BsmAI	GTCTC	1 cut(s)	1540
BsmFI	GGGAC	5 cut(s)	72, 171, 1184, 2730, 2855
BsmI	GAATGC	4 cut(s)	196, 346, 2064, 2831
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	5 cut(s)	108, 870, 1626, 1954, 2467
Bsp13I	TCCGGA	1 cut(s)	2326
Bsp68I	TCGCGA	2 cut(s)	1155, 2856
BspACI	CCGC	7 cut(s)	51, 63, 83, 179, 305, 756, 863
BspCNI	CTCAG	8 cut(s)	787, 838, 1186, 1236, 1497, 2128, 2742, 2875
BspDI	ATCGAT	1 cut(s)	1478
BspEI	TCCGGA	1 cut(s)	2326
BspFNI	CGCG	6 cut(s)	53, 63, 307, 1155, 2856, 2923
BspHI	TCATGA	1 cut(s)	504
BspLI	GGNNCC	9 cut(s)	233, 259, 867, 1172, 1896, 2437, 2589, 2746, 2778
BspMAI	CTGCAG	1 cut(s)	2697
BspMI	ACCTGC	1 cut(s)	7
BspPI	GGATC	4 cut(s)	215, 2012, 2126, 2697
BspQI	GCTCTTC	1 cut(s)	828
BspT107I	GGYRCC	3 cut(s)	257, 865, 2435
BsrDI	GCAATG	1 cut(s)	1806
BsrI	ACTGG	3 cut(s)	796, 870, 2780
BssECI	CCNNGG	6 cut(s)	188, 189, 261, 1515, 1781, 1897
BssNI	GRCGYC	1 cut(s)	96
BssT1I	CCWWGG	2 cut(s)	1515, 1781
Bst2UI	CCWGG	4 cut(s)	225, 352, 663, 1899
Bst6I	CTCTTC	2 cut(s)	828, 1569
BstACI	GRCGYC	1 cut(s)	96
BstAPI	GCANNNNNTGC	1 cut(s)	643
BstBAI	YACGTR	2 cut(s)	75, 2654
BstC8I	GCNNGC	5 cut(s)	302, 2064, 2068, 2142, 2821
BstDEI	CTNAG	9 cut(s)	774, 846, 1194, 1223, 1505, 2136, 2241, 2750, 2883
BstFNI	CGCG	6 cut(s)	53, 63, 307, 1155, 2856, 2923
BstMAI	GTCTC	1 cut(s)	1540
BstMCI	CGRYCG	1 cut(s)	87
BstMWI	GCNNNNNNNGC	9 cut(s)	620, 643, 827, 1142, 1199, 1205, 1655, 1742, 2624
BstNI	CCWGG	4 cut(s)	225, 352, 663, 1899
BstNSI	RCATGY	2 cut(s)	1829, 2219
BstSCI	CCNGG	7 cut(s)	187, 188, 223, 260, 350, 661, 1897
BstSFI	CTRYAG	2 cut(s)	2123, 2693
BstSLI	GKGCMC	3 cut(s)	870, 1626, 1954
BstUI	CGCG	6 cut(s)	53, 63, 307, 1155, 2856, 2923
BstV1I	GCAGC	4 cut(s)	1120, 1123, 1186, 1241
BstV2I	GAAGAC	1 cut(s)	2175
BstX2I	RGATCY	2 cut(s)	2689, 2859
BstXI	CCANNNNNNTGG	1 cut(s)	877
BstYI	RGATCY	2 cut(s)	2689, 2859
BstZI	CGGCCG	1 cut(s)	84
Bsu15I	ATCGAT	1 cut(s)	1478
Bsu36I	CCTNAGG	1 cut(s)	2883
BsuTUI	ATCGAT	1 cut(s)	1478
BtsI	GCAGTG	1 cut(s)	1443
BtsIMutI	CAGTG	4 cut(s)	235, 685, 1293, 1443
BtuMI	TCGCGA	2 cut(s)	1155, 2856
BveI	ACCTGC	1 cut(s)	7
Cac8I	GCNNGC	5 cut(s)	302, 2064, 2068, 2142, 2821
CciI	TCATGA	1 cut(s)	504
Cfr13I	GGNCC	7 cut(s)	31, 1171, 1894, 2000, 2587, 2744, 2776
Cfr9I	CCCGGG	1 cut(s)	188
ClaI	ATCGAT	1 cut(s)	1478
CseI	GACGC	3 cut(s)	69, 296, 1319
Csp6I	GTAC	8 cut(s)	46, 258, 402, 716, 852, 1187, 1405, 2901
CviQI	GTAC	8 cut(s)	46, 258, 402, 716, 852, 1187, 1405, 2901
DdeI	CTNAG	9 cut(s)	774, 846, 1194, 1223, 1505, 2136, 2241, 2750, 2883
DraI	TTTAAA	2 cut(s)	762, 2298
DraIII	CACNNNGTG	1 cut(s)	2435
DriI	GACNNNNNGTC	1 cut(s)	65
EaeI	YGGCCR	5 cut(s)	84, 315, 412, 879, 2817
EagI	CGGCCG	1 cut(s)	84
Eam1104I	CTCTTC	2 cut(s)	828, 1569
Eam1105I	GACNNNNNGTC	1 cut(s)	65
EarI	CTCTTC	2 cut(s)	828, 1569
EclXI	CGGCCG	1 cut(s)	84
Eco130I	CCWWGG	2 cut(s)	1515, 1781
Eco47I	GGWCC	4 cut(s)	31, 1171, 1894, 2744
Eco52I	CGGCCG	1 cut(s)	84
Eco57I	CTGAAG	7 cut(s)	876, 950, 1148, 1304, 1619, 1682, 2172
Eco72I	CACGTG	1 cut(s)	75
Eco81I	CCTNAGG	1 cut(s)	2883
Eco88I	CYCGRG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	1894
EcoRI	GAATTC	2 cut(s)	1462, 2006
EcoRII	CCWGG	4 cut(s)	223, 350, 661, 1897
EcoT14I	CCWWGG	2 cut(s)	1515, 1781
EcoT22I	ATGCAT	2 cut(s)	1738, 2100
ErhI	CCWWGG	2 cut(s)	1515, 1781
FaqI	GGGAC	5 cut(s)	72, 171, 1184, 2730, 2855
FauI	CCCGC	1 cut(s)	172
FbaI	TGATCA	1 cut(s)	973
FblI	GTMKAC	1 cut(s)	2784
Fnu4HI	GCNGC	7 cut(s)	51, 84, 305, 1134, 1137, 1200, 1230
Fsp4HI	GCNGC	7 cut(s)	51, 84, 305, 1134, 1137, 1200, 1230
FspBI	CTAG	8 cut(s)	38, 114, 546, 624, 1593, 1782, 2559, 2727
GluI	GCNGC	7 cut(s)	51, 84, 305, 1134, 1137, 1200, 1230
GsuI	CTGGAG	4 cut(s)	246, 756, 813, 1920
HapII	CCGG	7 cut(s)	87, 133, 189, 261, 641, 1796, 2327
HgaI	GACGC	3 cut(s)	69, 296, 1319
Hin1I	GRCGYC	1 cut(s)	96
HpaII	CCGG	7 cut(s)	87, 133, 189, 261, 641, 1796, 2327
HphI	GGTGA	2 cut(s)	677, 1868
Hpy166II	GTNNAC	8 cut(s)	31, 1624, 1820, 1876, 1906, 1952, 2612, 2785
Hpy8I	GTNNAC	8 cut(s)	31, 1624, 1820, 1876, 1906, 1952, 2612, 2785
Hpy99I	CGWCG	2 cut(s)	98, 1768
HpyCH4IV	ACGT	4 cut(s)	74, 96, 1388, 2653
HpyF10VI	GCNNNNNNNGC	9 cut(s)	620, 643, 827, 1142, 1199, 1205, 1655, 1742, 2624
HpyF3I	CTNAG	9 cut(s)	774, 846, 1194, 1223, 1505, 2136, 2241, 2750, 2883
HpySE526I	ACGT	4 cut(s)	74, 96, 1388, 2653
Hsp92I	GRCGYC	1 cut(s)	96
Kpn2I	TCCGGA	1 cut(s)	2326
KpnI	GGTACC	1 cut(s)	261
Ksp22I	TGATCA	1 cut(s)	973
LguI	GCTCTTC	1 cut(s)	828
LmnI	GCTCC	8 cut(s)	193, 231, 297, 634, 737, 1717, 2237, 2796
Lsp1109I	GCAGC	4 cut(s)	1120, 1123, 1186, 1241
LweI	GCATC	8 cut(s)	601, 646, 1012, 1241, 1723, 1794, 2413, 2800
MaeI	CTAG	8 cut(s)	38, 114, 546, 624, 1593, 1782, 2559, 2727
MaeII	ACGT	4 cut(s)	74, 96, 1388, 2653
MaeIII	GTNAC	6 cut(s)	565, 626, 1329, 1508, 2647, 2753
MflI	RGATCY	2 cut(s)	2689, 2859
MhlI	GDGCHC	5 cut(s)	108, 870, 1626, 1954, 2467
MlsI	TGGCCA	3 cut(s)	317, 414, 2819
MluNI	TGGCCA	3 cut(s)	317, 414, 2819
MlyI	GAGTC	4 cut(s)	75, 1505, 1760, 2953
MmeI	TCCRAC	2 cut(s)	588, 2784
Mox20I	TGGCCA	3 cut(s)	317, 414, 2819
Mph1103I	ATGCAT	2 cut(s)	1738, 2100
MroI	TCCGGA	1 cut(s)	2326
MroXI	GAANNNNTTC	2 cut(s)	393, 2892
MscI	TGGCCA	3 cut(s)	317, 414, 2819
MslI	CAYNNNNRTG	1 cut(s)	77
Msp20I	TGGCCA	3 cut(s)	317, 414, 2819
MspA1I	CMGCKG	2 cut(s)	364, 1031
MspI	CCGG	7 cut(s)	87, 133, 189, 261, 641, 1796, 2327
MspR9I	CCNGG	7 cut(s)	189, 190, 225, 262, 352, 663, 1899
Mva1269I	GAATGC	4 cut(s)	196, 346, 2064, 2831
MvaI	CCWGG	4 cut(s)	225, 352, 663, 1899
MvnI	CGCG	6 cut(s)	53, 63, 307, 1155, 2856, 2923
MwoI	GCNNNNNNNGC	9 cut(s)	620, 643, 827, 1142, 1199, 1205, 1655, 1742, 2624
NciI	CCSGG	3 cut(s)	189, 190, 262
NlaIV	GGNNCC	9 cut(s)	233, 259, 867, 1172, 1896, 2437, 2589, 2746, 2778
NmeAIII	GCCGAG	1 cut(s)	1118
NmuCI	GTSAC	2 cut(s)	1508, 2753
NruI	TCGCGA	2 cut(s)	1155, 2856
NsiI	ATGCAT	2 cut(s)	1738, 2100
NspI	RCATGY	2 cut(s)	1829, 2219
PagI	TCATGA	1 cut(s)	504
PciSI	GCTCTTC	1 cut(s)	828
PctI	GAATGC	4 cut(s)	196, 346, 2064, 2831
PdmI	GAANNNNTTC	2 cut(s)	393, 2892
PfeI	GAWTC	6 cut(s)	5, 155, 744, 986, 2735, 2851
PflMI	CCANNNNNTGG	1 cut(s)	2837
PfoI	TCCNGGA	1 cut(s)	223
PkrI	GCNGC	7 cut(s)	52, 85, 306, 1135, 1138, 1201, 1231
PleI	GAGTC	4 cut(s)	74, 1505, 1759, 2952
PmaCI	CACGTG	1 cut(s)	75
PmlI	CACGTG	1 cut(s)	75
PpsI	GAGTC	4 cut(s)	74, 1505, 1759, 2952
Ppu21I	YACGTR	2 cut(s)	75, 2654
PpuMI	RGGWCCY	1 cut(s)	1894
Psp5II	RGGWCCY	1 cut(s)	1894
Psp6I	CCWGG	4 cut(s)	223, 350, 661, 1897
PspCI	CACGTG	1 cut(s)	75
PspGI	CCWGG	4 cut(s)	223, 350, 661, 1897
PspN4I	GGNNCC	9 cut(s)	233, 259, 867, 1172, 1896, 2437, 2589, 2746, 2778
PspPI	GGNCC	7 cut(s)	31, 1171, 1894, 2000, 2587, 2744, 2776
PspPPI	RGGWCCY	1 cut(s)	1894
PstI	CTGCAG	1 cut(s)	2697
PsuI	RGATCY	2 cut(s)	2689, 2859
PvuII	CAGCTG	2 cut(s)	364, 1031
RruI	TCGCGA	2 cut(s)	1155, 2856
RsaI	GTAC	8 cut(s)	47, 259, 403, 717, 853, 1188, 1406, 2902
RsaNI	GTAC	8 cut(s)	46, 258, 402, 716, 852, 1187, 1405, 2901
RseI	CAYNNNNRTG	1 cut(s)	77
SapI	GCTCTTC	1 cut(s)	828
SatI	GCNGC	7 cut(s)	51, 84, 305, 1134, 1137, 1200, 1230
Sau96I	GGNCC	7 cut(s)	31, 1171, 1894, 2000, 2587, 2744, 2776
ScaI	AGTACT	2 cut(s)	853, 2902
SchI	GAGTC	4 cut(s)	75, 1505, 1760, 2953
ScrFI	CCNGG	7 cut(s)	189, 190, 225, 262, 352, 663, 1899
SduI	GDGCHC	5 cut(s)	108, 870, 1626, 1954, 2467
SfaNI	GCATC	8 cut(s)	601, 646, 1012, 1241, 1723, 1794, 2413, 2800
SfcI	CTRYAG	2 cut(s)	2123, 2693
SinI	GGWCC	4 cut(s)	31, 1171, 1894, 2744
SmaI	CCCGGG	1 cut(s)	190
SmiMI	CAYNNNNRTG	1 cut(s)	77
SmlI	CTYRAG	2 cut(s)	2182, 2670
SmoI	CTYRAG	2 cut(s)	2182, 2670
SpeI	ACTAGT	1 cut(s)	113
SsiI	CCGC	7 cut(s)	51, 63, 83, 179, 305, 756, 863
SspI	AATATT	1 cut(s)	1868
SspMI	CTAG	8 cut(s)	38, 114, 546, 624, 1593, 1782, 2559, 2727
StyD4I	CCNGG	7 cut(s)	187, 188, 223, 260, 350, 661, 1897
StyI	CCWWGG	2 cut(s)	1515, 1781
TaiI	ACGT	4 cut(s)	77, 99, 1391, 2656
TaqI	TCGA	7 cut(s)	162, 380, 1269, 1478, 1567, 1814, 2397
TatI	WGTACW	5 cut(s)	715, 851, 1186, 1404, 2900
TauI	GCSGC	3 cut(s)	53, 86, 307
TfiI	GAWTC	6 cut(s)	5, 155, 744, 986, 2735, 2851
TscAI	CASTG	4 cut(s)	242, 685, 1300, 1450
TseFI	GTSAC	2 cut(s)	1508, 2753
TseI	GCWGC	4 cut(s)	1133, 1136, 1199, 1229
Tsp45I	GTSAC	2 cut(s)	1508, 2753
TspGWI	ACGGA	3 cut(s)	1348, 2272, 2733
TspMI	CCCGGG	1 cut(s)	188
TspRI	CASTG	4 cut(s)	242, 685, 1300, 1450
Van91I	CCANNNNNTGG	1 cut(s)	2837
VneI	GTGCAC	2 cut(s)	1622, 1950
VpaK11BI	GGWCC	4 cut(s)	31, 1171, 1894, 2744
XapI	RAATTY	6 cut(s)	763, 802, 890, 1462, 2006, 2526
XbaI	TCTAGA	1 cut(s)	37
XceI	RCATGY	2 cut(s)	1829, 2219
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1522, 2770
XmaI	CCCGGG	1 cut(s)	188
XmaJI	CCTAGG	1 cut(s)	1781
XmiI	GTMKAC	1 cut(s)	2784
XmnI	GAANNNNTTC	2 cut(s)	393, 2892
XspI	CTAG	8 cut(s)	38, 114, 546, 624, 1593, 1782, 2559, 2727
ZraI	GACGTC	1 cut(s)	97
ZrmI	AGTACT	2 cut(s)	853, 2902
Zsp2I	ATGCAT	2 cut(s)	1738, 2100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.