Rw2G034420

Protein of unknown function (DUF760)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0003339
Physical Location & Seq
Forward (+)
56640536 .. 56642658
2123 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G034420.1

Sequence Viewer

Length: 723 bp
ATGCTGAAGCGGATTGAGCCGCTTGACAGCTCCGTTATCTCCAAAGGCGTTTCCGATTCCGCTAAGGACTCGATGAAGCAGACCATCTCTACTATGCTTGGATTGCTGCCGTCCGATCAGTTCTCCGCCACCGTTAGGGTTTGCAGAGCTCCCCTTGATCGCCTCCTCGCCTCTTCCATAATCACCGGGTATACACTGTGGAACGCGGAGTATCGGATATCGTTGATAAGGAATTTTGACATTTCTACGGAGAATTCTGTGGCTTTGTATGGGTCGAAGATAGATGGGAGTTCGGAGACGGTGGATGGTGAGGAAAGGGGTAGCGAGAATGGATTTGGGGCGAGTAATCAATACCTGGGCTCAACAACTCCTCAAGTTTTCGGGGATTTGTCTCCGGAGGCTTTGAATTACATCCAGAGGTTGCAATCGGAGTTAACTAATGTTAAGGAGTCTATGAAGAAGGAGAAGAAGTACAGTGGGGTTTTTGGGGACATGTACACCAGTGTGGCCATTATTCCCAATGACCTTGAGCTTGACAAGGAGGCCCACCCATCACCCTTTGAGCTCCACTTCCAATTCCCTGACCTCTCCCAACCCATCAGAGGATTCTTGAGGACAAGAGAAGTTGGAGAGTTCCTTAGTGGGGCTTTAGCAGGGGCAATGACCAAAGCTGTTCTTGCTCCTCTTGAGACCATCAGTCCGCGCGGAGGCACCTGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

240

Amino Acids

26.2

Weight (kDa)

5.09

Isoelectric Point (pI)

33.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 1 - 78 1.4e-20 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 710
AccI GTMKAC 1 cut(s) 191
AccII CGCG 3 cut(s) 206, 703, 705
AccIII TCCGGA 1 cut(s) 394
AciI CCGC 7 cut(s) 10, 20, 60, 126, 206, 701, 705
AcoI YGGCCR 1 cut(s) 507
AcsI RAATTY 2 cut(s) 232, 253
AcuI CTGAAG 1 cut(s) 26
AfaI GTAC 2 cut(s) 473, 497
AfiI CCNNNNNNNGG 4 cut(s) 135, 602, 643, 707
AflIII ACRYGT 1 cut(s) 492
AgsI TTSAA 1 cut(s) 406
AhdI GACNNNNNGTC 1 cut(s) 696
AjnI CCWGG 1 cut(s) 354
AleI CACNNNNGTG 1 cut(s) 503
AluBI AGCT 5 cut(s) 30, 149, 532, 565, 671
AluI AGCT 5 cut(s) 30, 149, 532, 565, 671
Alw21I GWGCWC 2 cut(s) 151, 567
Alw26I GTCTC 3 cut(s) 290, 396, 683
Aor13HI TCCGGA 1 cut(s) 394
AoxI GGCC 2 cut(s) 507, 543
ApeKI GCWGC 1 cut(s) 106
ApoI RAATTY 2 cut(s) 232, 253
AspLEI GCGC 1 cut(s) 705
AspS9I GGNCC 1 cut(s) 544
AsuC2I CCSGG 1 cut(s) 187
AsuHPI GGTGA 3 cut(s) 175, 320, 546
BalI TGGCCA 1 cut(s) 509
BanI GGYRCC 1 cut(s) 710
BanII GRGCYC 3 cut(s) 151, 362, 567
Bbv12I GWGCWC 2 cut(s) 151, 567
BbvI GCAGC 1 cut(s) 93
BccI CCATC 6 cut(s) 92, 278, 299, 559, 605, 701
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 356
BcnI CCSGG 1 cut(s) 187
BcoDI GTCTC 3 cut(s) 290, 396, 683
BisI GCNGC 2 cut(s) 20, 107
BlsI GCNGC 2 cut(s) 21, 108
Bme1390I CCNGG 2 cut(s) 187, 356
BmeRI GACNNNNNGTC 1 cut(s) 696
BmgT120I GGNCC 1 cut(s) 544
BmiI GGNNCC 1 cut(s) 712
BmrFI CCNGG 2 cut(s) 187, 356
Bpu10I CCTNAGC 1 cut(s) 63
BpuEI CTTGAG 4 cut(s) 357, 548, 631, 707
BpuMI CCSGG 1 cut(s) 187
BsaI GGTCTC 1 cut(s) 683
BsaJI CCNNGG 1 cut(s) 355
BsaWI WCCGGW 1 cut(s) 394
BsaXI ACNNNNNCTCC 2 cut(s) 455, 485
Bsc4I CCNNNNNNNGG 4 cut(s) 135, 602, 643, 707
Bse1I ACTGG 1 cut(s) 501
Bse3DI GCAATG 1 cut(s) 666
BseAI TCCGGA 1 cut(s) 394
BseBI CCWGG 1 cut(s) 356
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 2 cut(s) 310, 411
BseLI CCNNNNNNNGG 4 cut(s) 135, 602, 643, 707
BseMI GCAATG 1 cut(s) 666
BseNI ACTGG 1 cut(s) 501
BseRI GAGGAG 3 cut(s) 155, 360, 672
BseXI GCAGC 1 cut(s) 93
Bsh1236I CGCG 3 cut(s) 206, 703, 705
BshFI GGCC 2 cut(s) 509, 545
BshNI GGYRCC 1 cut(s) 710
BsiHKAI GWGCWC 2 cut(s) 151, 567
BsiSI CCGG 2 cut(s) 186, 395
BslFI GGGAC 1 cut(s) 503
BslI CCNNNNNNNGG 4 cut(s) 135, 602, 643, 707
BsmAI GTCTC 3 cut(s) 290, 396, 683
BsmBI CGTCTC 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 503
BsnI GGCC 2 cut(s) 509, 545
Bso31I GGTCTC 1 cut(s) 683
Bsp1286I GDGCHC 3 cut(s) 151, 362, 567
Bsp13I TCCGGA 1 cut(s) 394
Bsp1407I TGTACA 1 cut(s) 495
Bsp143I GATC 2 cut(s) 115, 157
BspACI CCGC 7 cut(s) 10, 20, 60, 126, 206, 701, 705
BspANI GGCC 2 cut(s) 509, 545
BspEI TCCGGA 1 cut(s) 394
BspFNI CGCG 3 cut(s) 206, 703, 705
BspLI GGNNCC 1 cut(s) 712
BspT107I GGYRCC 1 cut(s) 710
BspTNI GGTCTC 1 cut(s) 683
BsrDI GCAATG 1 cut(s) 666
BsrGI TGTACA 1 cut(s) 495
BsrI ACTGG 1 cut(s) 501
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 2 cut(s) 115, 157
BssNAI GTATAC 1 cut(s) 192
Bst1107I GTATAC 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 4 cut(s) 133, 198, 301, 476
Bst6I CTCTTC 1 cut(s) 178
BstAUI TGTACA 1 cut(s) 495
BstDEI CTNAG 2 cut(s) 63, 638
BstF5I GGATG 2 cut(s) 310, 411
BstFNI CGCG 3 cut(s) 206, 703, 705
BstHHI GCGC 1 cut(s) 705
BstKTI GATC 2 cut(s) 118, 160
BstMAI GTCTC 3 cut(s) 290, 396, 683
BstMBI GATC 2 cut(s) 115, 157
BstMWI GCNNNNNNNGC 3 cut(s) 16, 103, 677
BstNI CCWGG 1 cut(s) 356
BstNSI RCATGY 1 cut(s) 496
BstSCI CCNGG 2 cut(s) 185, 354
BstUI CGCG 3 cut(s) 206, 703, 705
BstV1I GCAGC 1 cut(s) 93
BstZ17I GTATAC 1 cut(s) 192
BsuRI GGCC 2 cut(s) 509, 545
BtsCI GGATG 2 cut(s) 310, 411
BtsIMutI CAGTG 3 cut(s) 194, 481, 508
CfoI GCGC 1 cut(s) 705
Cfr13I GGNCC 1 cut(s) 544
Csp6I GTAC 2 cut(s) 472, 496
CviAII CATG 1 cut(s) 493
CviQI GTAC 2 cut(s) 472, 496
DdeI CTNAG 2 cut(s) 63, 638
DpnI GATC 2 cut(s) 117, 159
DpnII GATC 2 cut(s) 115, 157
DriI GACNNNNNGTC 1 cut(s) 696
EaeI YGGCCR 1 cut(s) 507
Eam1104I CTCTTC 1 cut(s) 178
Eam1105I GACNNNNNGTC 1 cut(s) 696
EarI CTCTTC 1 cut(s) 178
EciI GGCGGA 1 cut(s) 115
Ecl136II GAGCTC 2 cut(s) 149, 565
Eco24I GRGCYC 3 cut(s) 151, 362, 567
Eco31I GGTCTC 1 cut(s) 683
Eco32I GATATC 1 cut(s) 219
Eco53kI GAGCTC 2 cut(s) 149, 565
Eco57I CTGAAG 1 cut(s) 26
EcoICRI GAGCTC 2 cut(s) 149, 565
EcoRI GAATTC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 354
EcoRV GATATC 1 cut(s) 219
EcoT38I GRGCYC 3 cut(s) 151, 362, 567
Esp3I CGTCTC 1 cut(s) 290
FaeI CATG 1 cut(s) 496
FaiI YATR 6 cut(s) 95, 179, 192, 270, 455, 494
FalI AAGNNNNNCTT 2 cut(s) 660, 692
FaqI GGGAC 1 cut(s) 503
FatI CATG 1 cut(s) 492
FblI GTMKAC 1 cut(s) 191
Fnu4HI GCNGC 2 cut(s) 20, 107
FokI GGATG 2 cut(s) 317, 398
FriOI GRGCYC 3 cut(s) 151, 362, 567
Fsp4HI GCNGC 2 cut(s) 20, 107
GlaI GCGC 1 cut(s) 704
GluI GCNGC 2 cut(s) 20, 107
HaeIII GGCC 2 cut(s) 509, 545
HapII CCGG 2 cut(s) 186, 395
HhaI GCGC 1 cut(s) 705
Hin1II CATG 1 cut(s) 496
Hin6I GCGC 1 cut(s) 703
HinP1I GCGC 1 cut(s) 703
HincII GTYRAC 1 cut(s) 435
HindII GTYRAC 1 cut(s) 435
HinfI GANTC 4 cut(s) 56, 68, 449, 606
HpaI GTTAAC 1 cut(s) 435
HpaII CCGG 2 cut(s) 186, 395
HphI GGTGA 3 cut(s) 175, 320, 546
Hpy166II GTNNAC 3 cut(s) 192, 435, 498
Hpy188I TCNGA 6 cut(s) 55, 115, 216, 295, 430, 602
Hpy188III TCNNGA 4 cut(s) 395, 415, 610, 686
Hpy8I GTNNAC 3 cut(s) 192, 435, 498
HpyAV CCTTC 1 cut(s) 454
HpyCH4III ACNGT 4 cut(s) 133, 198, 301, 476
HpyCH4V TGCA 2 cut(s) 144, 424
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 103, 677
HpyF3I CTNAG 2 cut(s) 63, 638
Hsp92II CATG 1 cut(s) 496
HspAI GCGC 1 cut(s) 703
Kpn2I TCCGGA 1 cut(s) 394
KspAI GTTAAC 1 cut(s) 435
Kzo9I GATC 2 cut(s) 115, 157
LmnI GCTCC 4 cut(s) 35, 154, 570, 685
LpnPI CCDG 8 cut(s) 199, 341, 368, 408, 428, 514, 594, 639
Lsp1109I GCAGC 1 cut(s) 93
MalI GATC 2 cut(s) 117, 159
MboI GATC 2 cut(s) 115, 157
MboII GAAGA 4 cut(s) 165, 289, 469, 478
MhlI GDGCHC 3 cut(s) 151, 362, 567
MlsI TGGCCA 1 cut(s) 509
MluCI AATT 5 cut(s) 232, 253, 406, 575, 718
MluNI TGGCCA 1 cut(s) 509
MlyI GAGTC 2 cut(s) 62, 458
MmeI TCCRAC 1 cut(s) 607
Mox20I TGGCCA 1 cut(s) 509
MroI TCCGGA 1 cut(s) 394
MscI TGGCCA 1 cut(s) 509
MseI TTAA 2 cut(s) 434, 444
MslI CAYNNNNRTG 1 cut(s) 503
Msp20I TGGCCA 1 cut(s) 509
MspI CCGG 2 cut(s) 186, 395
MspR9I CCNGG 2 cut(s) 187, 356
MvaI CCWGG 1 cut(s) 356
MvnI CGCG 3 cut(s) 206, 703, 705
MwoI GCNNNNNNNGC 3 cut(s) 16, 103, 677
NciI CCSGG 1 cut(s) 187
NdeII GATC 2 cut(s) 115, 157
NlaIII CATG 1 cut(s) 496
NlaIV GGNNCC 1 cut(s) 712
NspI RCATGY 1 cut(s) 496
OliI CACNNNNGTG 1 cut(s) 503
PciI ACATGT 1 cut(s) 492
PfeI GAWTC 2 cut(s) 56, 606
PkrI GCNGC 2 cut(s) 21, 108
PleI GAGTC 2 cut(s) 62, 457
PpsI GAGTC 2 cut(s) 62, 457
PscI ACATGT 1 cut(s) 492
Psp124BI GAGCTC 2 cut(s) 151, 567
Psp6I CCWGG 1 cut(s) 354
PspGI CCWGG 1 cut(s) 354
PspN4I GGNNCC 1 cut(s) 712
PspPI GGNCC 1 cut(s) 544
RsaI GTAC 2 cut(s) 473, 497
RsaNI GTAC 2 cut(s) 472, 496
RseI CAYNNNNRTG 1 cut(s) 503
SacI GAGCTC 2 cut(s) 151, 567
SaqAI TTAA 2 cut(s) 434, 444
SatI GCNGC 2 cut(s) 20, 107
Sau3AI GATC 2 cut(s) 115, 157
Sau96I GGNCC 1 cut(s) 544
SchI GAGTC 2 cut(s) 62, 458
ScrFI CCNGG 2 cut(s) 187, 356
SduI GDGCHC 3 cut(s) 151, 362, 567
SmiMI CAYNNNNRTG 1 cut(s) 503
SmlI CTYRAG 4 cut(s) 372, 527, 610, 686
SmoI CTYRAG 4 cut(s) 372, 527, 610, 686
Sse9I AATT 5 cut(s) 232, 253, 406, 575, 718
SsiI CCGC 7 cut(s) 10, 20, 60, 126, 206, 701, 705
SstI GAGCTC 2 cut(s) 151, 567
StyD4I CCNGG 2 cut(s) 185, 354
TaaI ACNGT 4 cut(s) 133, 198, 301, 476
TaqI TCGA 2 cut(s) 71, 275
TasI AATT 5 cut(s) 232, 253, 406, 575, 718
TatI WGTACW 2 cut(s) 471, 495
TauI GCSGC 1 cut(s) 22
TfiI GAWTC 2 cut(s) 56, 606
Tru1I TTAA 2 cut(s) 434, 444
Tru9I TTAA 2 cut(s) 434, 444
TscAI CASTG 3 cut(s) 201, 481, 508
TseI GCWGC 1 cut(s) 106
TspDTI ATGAA 2 cut(s) 89, 470
TspGWI ACGGA 2 cut(s) 22, 263
TspRI CASTG 3 cut(s) 201, 481, 508
XapI RAATTY 2 cut(s) 232, 253
XceI RCATGY 1 cut(s) 496
XmiI GTMKAC 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.