Rh4DG118700

Protein of unknown function (DUF760)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0003339
Physical Location & Seq
Forward (+)
18778269 .. 18779314
1046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG118700.1

Sequence Viewer

Length: 879 bp
ATGGCCGAAGCTCAAGAATCCGATCAAAAGAGTGAAGAAGAAGAAGAAGAGGAACACTATGGAAGCCGAAGCTCAAGAATCGAGCCCCCAAGATTTGAGAGGCACCACACGAGGCCACAAGTCTCTCGTGGTTGTTCCATAGCGGCCGCAGCTCGGGCTTTCACTCTCTCTCGCCTCACCGACCTGTCACTCAAGCCCCGCCACCCACAACCACCACCGCCTCCCGTTTCCCGCCACCACCTCCTCGCCCACCCATTACTTCCCTCCTTCCGAGCCCAACGGCGTCGTCTGGCCTGGTCGGCTTCCACAATCCGATGCCTCATCTCCGGCGTCGGCGGCGGCCGCGTGTCCTACGAGTTAGTCTCGACGCGGAAGTCCGGCTTCGACCGCGGATTCTTCGTTATCGCCAATATGCTGAAGCGGATTGAGCCGCTTGACAGCTCCGTTATCTCCAAAGGCGTTTCCGATTCTGCTAAGGACTCGATGAAGCAGACCATCTCTACTATGCTTGGATTGCTGCCGTCCGATCAGTTCTCCGTCACCGTTAGGGTTTGCAGAGCTCCCCTTGATCGCCTCCTCGCCTCTTCCATAATCACCGGGTATACACTGTGGAACTCGGAGTATCGGATATCGTTGATAAGGAATTTTGACATTTCTACGGAGAATTCTGTGGCTTTGTATGGGTCGAAGATAGATGGGAGTTCGGAGATGGTGGATGGTGAGGAAAGGGGTAGCGAGAATGGATTTGGGGCGAGAAATCAATACCTGGGCTCAACAACTCCTCAAGTTTTCGGGGATTTGTCTCCGGAGGCTTTGAATTACATCCAGAGGTTGCAATCGGAGTTAACTAATGTTAAGGAGGTGAGCCTTTTCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

292

Amino Acids

32.44

Weight (kDa)

8.43

Isoelectric Point (pI)

55.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 137 - 215 1.8e-20 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 373
AccB1I GGYRCC 1 cut(s) 102
AccI GTMKAC 1 cut(s) 602
AccII CGCG 3 cut(s) 345, 370, 390
AccIII TCCGGA 1 cut(s) 805
AcoI YGGCCR 3 cut(s) 3, 144, 340
AcsI RAATTY 2 cut(s) 643, 664
AcuI CTGAAG 1 cut(s) 437
AcyI GRCGYC 2 cut(s) 283, 330
AfiI CCNNNNNNNGG 1 cut(s) 153
AgsI TTSAA 1 cut(s) 817
AjnI CCWGG 2 cut(s) 293, 765
AluBI AGCT 5 cut(s) 11, 72, 152, 441, 560
AluI AGCT 5 cut(s) 11, 72, 152, 441, 560
Alw21I GWGCWC 1 cut(s) 562
Alw26I GTCTC 3 cut(s) 127, 367, 807
Ama87I CYCGRG 1 cut(s) 153
Aor13HI TCCGGA 1 cut(s) 805
AoxI GGCC 5 cut(s) 3, 113, 144, 291, 340
ApeKI GCWGC 2 cut(s) 149, 517
ApoI RAATTY 2 cut(s) 643, 664
AsuC2I CCSGG 1 cut(s) 598
AsuHPI GGTGA 5 cut(s) 169, 532, 586, 731, 874
AvaI CYCGRG 1 cut(s) 153
BanI GGYRCC 1 cut(s) 102
BanII GRGCYC 4 cut(s) 87, 277, 562, 773
BauI CACGAG 2 cut(s) 109, 126
Bbv12I GWGCWC 1 cut(s) 562
BbvI GCAGC 2 cut(s) 161, 504
BccI CCATC 4 cut(s) 503, 689, 703, 710
BceAI ACGGC 2 cut(s) 296, 505
BciT130I CCWGG 2 cut(s) 295, 767
BcnI CCSGG 1 cut(s) 598
BcoDI GTCTC 3 cut(s) 127, 367, 807
BglI GCCNNNNNGGC 1 cut(s) 299
BisI GCNGC 8 cut(s) 144, 147, 150, 337, 340, 343, 431, 518
BlsI GCNGC 8 cut(s) 145, 148, 151, 338, 341, 344, 432, 519
Bme1390I CCNGG 3 cut(s) 295, 598, 767
BmeT110I CYCGRG 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 104
BmrFI CCNGG 3 cut(s) 295, 598, 767
BmsI GCATC 1 cut(s) 305
BplI GAGNNNNNCTC 2 cut(s) 347, 379
Bpu10I CCTNAGC 1 cut(s) 474
BpuEI CTTGAG 3 cut(s) 58, 176, 768
BpuMI CCSGG 1 cut(s) 598
BsaHI GRCGYC 2 cut(s) 283, 330
BsaJI CCNNGG 2 cut(s) 388, 766
BsaWI WCCGGW 1 cut(s) 805
Bsc4I CCNNNNNNNGG 1 cut(s) 153
BseAI TCCGGA 1 cut(s) 805
BseBI CCWGG 2 cut(s) 295, 767
BseDI CCNNGG 2 cut(s) 388, 766
BseGI GGATG 2 cut(s) 721, 822
BseLI CCNNNNNNNGG 1 cut(s) 153
BseRI GAGGAG 3 cut(s) 233, 566, 771
BseX3I CGGCCG 2 cut(s) 144, 340
BseXI GCAGC 2 cut(s) 161, 504
Bsh1236I CGCG 3 cut(s) 345, 370, 390
Bsh1285I CGRYCG 3 cut(s) 147, 343, 388
BshFI GGCC 5 cut(s) 5, 115, 146, 293, 342
BshNI GGYRCC 1 cut(s) 102
BsiEI CGRYCG 3 cut(s) 147, 343, 388
BsiHKAI GWGCWC 1 cut(s) 562
BsiHKCI CYCGRG 1 cut(s) 153
BsiSI CCGG 4 cut(s) 327, 378, 597, 806
BslI CCNNNNNNNGG 1 cut(s) 153
BsmAI GTCTC 3 cut(s) 127, 367, 807
BsnI GGCC 5 cut(s) 5, 115, 146, 293, 342
BsoBI CYCGRG 1 cut(s) 153
Bsp1286I GDGCHC 4 cut(s) 87, 277, 562, 773
Bsp13I TCCGGA 1 cut(s) 805
Bsp143I GATC 3 cut(s) 22, 526, 568
BspANI GGCC 5 cut(s) 5, 115, 146, 293, 342
BspEI TCCGGA 1 cut(s) 805
BspFNI CGCG 3 cut(s) 345, 370, 390
BspLI GGNNCC 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 102
BssECI CCNNGG 2 cut(s) 388, 766
BssMI GATC 3 cut(s) 22, 526, 568
BssNAI GTATAC 1 cut(s) 603
BssNI GRCGYC 2 cut(s) 283, 330
BssSI CACGAG 2 cut(s) 109, 126
Bst1107I GTATAC 1 cut(s) 603
Bst2BI CACGAG 2 cut(s) 109, 126
Bst2UI CCWGG 2 cut(s) 295, 767
Bst4CI ACNGT 2 cut(s) 544, 609
Bst6I CTCTTC 2 cut(s) 42, 589
BstACI GRCGYC 2 cut(s) 283, 330
BstDEI CTNAG 1 cut(s) 474
BstDSI CCRYGG 1 cut(s) 388
BstF5I GGATG 2 cut(s) 721, 822
BstFNI CGCG 3 cut(s) 345, 370, 390
BstKTI GATC 3 cut(s) 25, 529, 571
BstMAI GTCTC 3 cut(s) 127, 367, 807
BstMBI GATC 3 cut(s) 22, 526, 568
BstMCI CGRYCG 3 cut(s) 147, 343, 388
BstMWI GCNNNNNNNGC 8 cut(s) 149, 155, 299, 336, 342, 387, 427, 514
BstNI CCWGG 2 cut(s) 295, 767
BstSCI CCNGG 3 cut(s) 293, 596, 765
BstUI CGCG 3 cut(s) 345, 370, 390
BstV1I GCAGC 2 cut(s) 161, 504
BstZ17I GTATAC 1 cut(s) 603
BstZI CGGCCG 2 cut(s) 144, 340
BsuRI GGCC 5 cut(s) 5, 115, 146, 293, 342
BtgI CCRYGG 1 cut(s) 388
BtsCI GGATG 2 cut(s) 721, 822
BtsIMutI CAGTG 1 cut(s) 605
CciNI GCGGCCGC 2 cut(s) 144, 340
Cfr42I CCGCGG 1 cut(s) 391
CseI GACGC 3 cut(s) 272, 319, 376
DdeI CTNAG 1 cut(s) 474
DpnI GATC 3 cut(s) 24, 528, 570
DpnII GATC 3 cut(s) 22, 526, 568
DrdI GACNNNNNNGTC 1 cut(s) 373
DseDI GACNNNNNNGTC 1 cut(s) 373
EaeI YGGCCR 3 cut(s) 3, 144, 340
EagI CGGCCG 2 cut(s) 144, 340
Eam1104I CTCTTC 2 cut(s) 42, 589
EarI CTCTTC 2 cut(s) 42, 589
Ecl136II GAGCTC 1 cut(s) 560
EclXI CGGCCG 2 cut(s) 144, 340
Eco24I GRGCYC 4 cut(s) 87, 277, 562, 773
Eco32I GATATC 1 cut(s) 630
Eco52I CGGCCG 2 cut(s) 144, 340
Eco53kI GAGCTC 1 cut(s) 560
Eco57I CTGAAG 1 cut(s) 437
Eco88I CYCGRG 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 560
EcoRI GAATTC 1 cut(s) 664
EcoRII CCWGG 2 cut(s) 293, 765
EcoRV GATATC 1 cut(s) 630
EcoT38I GRGCYC 4 cut(s) 87, 277, 562, 773
FaiI YATR 7 cut(s) 60, 140, 413, 506, 590, 603, 681
FalI AAGNNNNNCTT 2 cut(s) 365, 397
FauI CCCGC 2 cut(s) 206, 239
FblI GTMKAC 1 cut(s) 602
Fnu4HI GCNGC 8 cut(s) 144, 147, 150, 337, 340, 343, 431, 518
FokI GGATG 2 cut(s) 728, 809
FriOI GRGCYC 4 cut(s) 87, 277, 562, 773
Fsp4HI GCNGC 8 cut(s) 144, 147, 150, 337, 340, 343, 431, 518
GluI GCNGC 8 cut(s) 144, 147, 150, 337, 340, 343, 431, 518
HaeIII GGCC 5 cut(s) 5, 115, 146, 293, 342
HapII CCGG 4 cut(s) 327, 378, 597, 806
HgaI GACGC 3 cut(s) 272, 319, 376
Hin1I GRCGYC 2 cut(s) 283, 330
HincII GTYRAC 1 cut(s) 846
HindII GTYRAC 1 cut(s) 846
HinfI GANTC 5 cut(s) 17, 78, 393, 467, 479
HpaI GTTAAC 1 cut(s) 846
HpaII CCGG 4 cut(s) 327, 378, 597, 806
HphI GGTGA 5 cut(s) 169, 532, 586, 731, 874
Hpy166II GTNNAC 2 cut(s) 603, 846
Hpy188I TCNGA 9 cut(s) 22, 272, 314, 466, 526, 619, 627, 706, 841
Hpy188III TCNNGA 5 cut(s) 14, 75, 364, 806, 826
Hpy8I GTNNAC 2 cut(s) 603, 846
Hpy99I CGWCG 3 cut(s) 288, 335, 370
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 2 cut(s) 544, 609
HpyCH4V TGCA 2 cut(s) 555, 835
HpyF10VI GCNNNNNNNGC 8 cut(s) 149, 155, 299, 336, 342, 387, 427, 514
HpyF3I CTNAG 1 cut(s) 474
Hsp92I GRCGYC 2 cut(s) 283, 330
Kpn2I TCCGGA 1 cut(s) 805
KspAI GTTAAC 1 cut(s) 846
KspI CCGCGG 1 cut(s) 391
Kzo9I GATC 3 cut(s) 22, 526, 568
LmnI GCTCC 2 cut(s) 446, 565
Lsp1109I GCAGC 2 cut(s) 161, 504
LweI GCATC 1 cut(s) 305
MaeIII GTNAC 2 cut(s) 186, 538
MalI GATC 3 cut(s) 24, 528, 570
MboI GATC 3 cut(s) 22, 526, 568
MboII GAAGA 8 cut(s) 47, 50, 53, 56, 59, 388, 576, 700
MhlI GDGCHC 4 cut(s) 87, 277, 562, 773
MluCI AATT 3 cut(s) 643, 664, 817
MlyI GAGTC 1 cut(s) 473
MroI TCCGGA 1 cut(s) 805
MseI TTAA 3 cut(s) 845, 855, 877
MspA1I CMGCKG 1 cut(s) 390
MspI CCGG 4 cut(s) 327, 378, 597, 806
MspR9I CCNGG 3 cut(s) 295, 598, 767
MvaI CCWGG 2 cut(s) 295, 767
MvnI CGCG 3 cut(s) 345, 370, 390
MwoI GCNNNNNNNGC 8 cut(s) 149, 155, 299, 336, 342, 387, 427, 514
NciI CCSGG 1 cut(s) 598
NdeII GATC 3 cut(s) 22, 526, 568
NlaIV GGNNCC 1 cut(s) 104
NmuCI GTSAC 2 cut(s) 186, 538
NotI GCGGCCGC 2 cut(s) 144, 340
PfeI GAWTC 4 cut(s) 17, 78, 393, 467
PkrI GCNGC 8 cut(s) 145, 148, 151, 338, 341, 344, 432, 519
PleI GAGTC 1 cut(s) 473
PpsI GAGTC 1 cut(s) 473
Psp124BI GAGCTC 1 cut(s) 562
Psp6I CCWGG 2 cut(s) 293, 765
PspGI CCWGG 2 cut(s) 293, 765
PspN4I GGNNCC 1 cut(s) 104
SacI GAGCTC 1 cut(s) 562
SacII CCGCGG 1 cut(s) 391
SaqAI TTAA 3 cut(s) 845, 855, 877
SatI GCNGC 8 cut(s) 144, 147, 150, 337, 340, 343, 431, 518
Sau3AI GATC 3 cut(s) 22, 526, 568
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 3 cut(s) 295, 598, 767
SduI GDGCHC 4 cut(s) 87, 277, 562, 773
SfaNI GCATC 1 cut(s) 305
Sfr303I CCGCGG 1 cut(s) 391
SgrBI CCGCGG 1 cut(s) 391
SmlI CTYRAG 4 cut(s) 12, 73, 191, 783
SmoI CTYRAG 4 cut(s) 12, 73, 191, 783
Sse9I AATT 3 cut(s) 643, 664, 817
SstI GAGCTC 1 cut(s) 562
StyD4I CCNGG 3 cut(s) 293, 596, 765
TaaI ACNGT 2 cut(s) 544, 609
TaqI TCGA 5 cut(s) 81, 365, 384, 482, 686
TasI AATT 3 cut(s) 643, 664, 817
TauI GCSGC 6 cut(s) 146, 149, 339, 342, 345, 433
TfiI GAWTC 4 cut(s) 17, 78, 393, 467
Tru1I TTAA 3 cut(s) 845, 855, 877
Tru9I TTAA 3 cut(s) 845, 855, 877
TscAI CASTG 1 cut(s) 612
TseFI GTSAC 2 cut(s) 186, 538
TseI GCWGC 2 cut(s) 149, 517
Tsp45I GTSAC 2 cut(s) 186, 538
TspDTI ATGAA 1 cut(s) 500
TspGWI ACGGA 3 cut(s) 433, 526, 674
TspRI CASTG 1 cut(s) 612
XapI RAATTY 2 cut(s) 643, 664
XmiI GTMKAC 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.