Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002862.1

Orthogroup ID

OG0003339

Physical Location & Seq

Genomic Coordinates Forward (+)

36666 .. 37432

Gene Structure 767 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002862.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

atggcggccgcagctcgggctttcactctctctcgcctcaccgacttgtcactcaagccccgccacccacaaccaccaccgcctcctgtttcccaccaccaactcctcgcccgccaattacttccctccttccgcgcccaacggcgtcgtctggcctgctcggcttccacaatccgatgcctcatctccggcgtcggcggcggcggcgtgtccgacgagttcgtctcgacgcggaagtccagcttccaccgcggattctccgttatcgccaatatgctaaagcggattaagctgcttgacagctccgttatctctaaaggcatttccgattccgctaaggactcgatgaagcagaccatctctactatgcttggattgctgtcgtccgatcagttctccgtcaccgttagggtttgcagagctccccttgatcgcctcatcgcctcttccataatcactgggtatacactgtggaacgcggagtatcggatatcgttgataaggaattttgacatttctacggagaattctgtggctttggatgggtcgaagatagatgggagttcggagacggtggatggtgaggaaaggggtagctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

199

Amino Acids

21.59

Weight (kDa)

10.01

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14970
fragaria_vesca	FvH4_6g49830 FvH4_6g49830 FvH4_6g49830 FvH4_6g49830
malus_domestica	MD09G1041100.v1.1 MD17G1042400.v1.1
prunus_persica	Prupe.3G276600_v2.0.a1 Prupe.3G276600_v2.0.a1
pyrus_communis	pycom17g03800
rosa_chinensis	RchiOBHm_Chr2g0169981 RchiOBHm_Chr4g0386121 RchiOBHm_Chr4g0386261 RchiOBHm_Chr4g0386271
rosa_laevigata	RLG00000021916
rosa_multiflora	Rmu_sc0002862.1_g000014 Rmu_sc0003415.1_g000008 Rmu_sc0013078.1_g000018 Rmu_ssc0000389.1_g000006
rosa_roxburghii	Rroxscaffold_2G00081690 Rroxscaffold_5G00333850
rosa_rugosa	Rorug02G0544900
rosa_samantha	Rh2AG616900 Rh2CG598000 Rh2DG639900 Rh3CG265700 Rh4AG010800 Rh4BG007900 Rh4DG118700 Rh5DG240500 Rh7DG285000 Rh7DG341500
rosa_wichuraiana	Rw2G029160 Rw2G034420 Rw2G051100 Rw3G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	221, 235
AccI	GTMKAC	1 cut(s)	464
AccII	CGCG	4 cut(s)	135, 232, 252, 479
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	2 cut(s)	505, 526
AcyI	GRCGYC	2 cut(s)	145, 192
AfiI	CCNNNNNNNGG	1 cut(s)	15
AluBI	AGCT	6 cut(s)	14, 243, 292, 303, 422, 597
AluI	AGCT	6 cut(s)	14, 243, 292, 303, 422, 597
Alw21I	GWGCWC	1 cut(s)	424
Alw26I	GTCTC	2 cut(s)	229, 563
Ama87I	CYCGRG	1 cut(s)	15
AoxI	GGCC	2 cut(s)	6, 153
ApeKI	GCWGC	2 cut(s)	11, 292
ApoI	RAATTY	2 cut(s)	505, 526
AspLEI	GCGC	1 cut(s)	137
AsuHPI	GGTGA	3 cut(s)	31, 394, 593
AvaI	CYCGRG	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	424
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	2 cut(s)	23, 279
BccI	CCATC	4 cut(s)	365, 536, 551, 572
BceAI	ACGGC	1 cut(s)	158
BcoDI	GTCTC	2 cut(s)	229, 563
BfaI	CTAG	1 cut(s)	598
BglI	GCCNNNNNGGC	1 cut(s)	161
BisI	GCNGC	7 cut(s)	6, 9, 12, 199, 202, 205, 293
BlsI	GCNGC	7 cut(s)	7, 10, 13, 200, 203, 206, 294
BmeT110I	CYCGRG	1 cut(s)	15
BmrI	ACTGGG	1 cut(s)	468
BmsI	GCATC	1 cut(s)	167
BmuI	ACTGGG	1 cut(s)	468
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
Bpu10I	CCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	38
BsaHI	GRCGYC	2 cut(s)	145, 192
BsaJI	CCNNGG	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse1I	ACTGG	1 cut(s)	463
BseDI	CCNNGG	1 cut(s)	250
BseGI	GGATG	2 cut(s)	547, 583
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseNI	ACTGG	1 cut(s)	463
BseRI	GAGGAG	1 cut(s)	95
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	2 cut(s)	23, 279
Bsh1236I	CGCG	4 cut(s)	135, 232, 252, 479
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	8, 155
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	424
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	2 cut(s)	229, 563
BsmBI	CGTCTC	2 cut(s)	229, 563
BsnI	GGCC	2 cut(s)	8, 155
BsoBI	CYCGRG	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp143I	GATC	2 cut(s)	388, 430
BspANI	GGCC	2 cut(s)	8, 155
BspFNI	CGCG	4 cut(s)	135, 232, 252, 479
BsrI	ACTGG	1 cut(s)	463
BssECI	CCNNGG	1 cut(s)	250
BssMI	GATC	2 cut(s)	388, 430
BssNAI	GTATAC	1 cut(s)	465
BssNI	GRCGYC	2 cut(s)	145, 192
Bst1107I	GTATAC	1 cut(s)	465
Bst4CI	ACNGT	3 cut(s)	406, 471, 574
Bst6I	CTCTTC	1 cut(s)	451
BstACI	GRCGYC	2 cut(s)	145, 192
BstC8I	GCNNGC	2 cut(s)	112, 157
BstDEI	CTNAG	1 cut(s)	336
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	2 cut(s)	547, 583
BstFNI	CGCG	4 cut(s)	135, 232, 252, 479
BstHHI	GCGC	1 cut(s)	137
BstKTI	GATC	2 cut(s)	391, 433
BstMAI	GTCTC	2 cut(s)	229, 563
BstMBI	GATC	2 cut(s)	388, 430
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 17, 161, 198, 204, 249, 289, 376
BstUI	CGCG	4 cut(s)	135, 232, 252, 479
BstV1I	GCAGC	2 cut(s)	23, 279
BstZ17I	GTATAC	1 cut(s)	465
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	8, 155
BtgI	CCRYGG	1 cut(s)	250
BtgZI	GCGATG	1 cut(s)	424
BtsCI	GGATG	2 cut(s)	547, 583
BtsIMutI	CAGTG	2 cut(s)	456, 467
Cac8I	GCNNGC	2 cut(s)	112, 157
CciNI	GCGGCCGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	137
Cfr42I	CCGCGG	1 cut(s)	253
CseI	GACGC	3 cut(s)	134, 181, 238
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	2 cut(s)	390, 432
DpnII	GATC	2 cut(s)	388, 430
DrdI	GACNNNNNNGTC	2 cut(s)	221, 235
DseDI	GACNNNNNNGTC	2 cut(s)	221, 235
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	451
EarI	CTCTTC	1 cut(s)	451
Ecl136II	GAGCTC	1 cut(s)	422
EclXI	CGGCCG	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	424
Eco32I	GATATC	1 cut(s)	492
Eco52I	CGGCCG	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	422
Eco88I	CYCGRG	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	422
EcoRI	GAATTC	1 cut(s)	526
EcoRV	GATATC	1 cut(s)	492
EcoT38I	GRGCYC	1 cut(s)	424
Esp3I	CGTCTC	2 cut(s)	229, 563
FaiI	YATR	4 cut(s)	275, 368, 452, 465
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FauI	CCCGC	2 cut(s)	68, 119
FblI	GTMKAC	1 cut(s)	464
Fnu4HI	GCNGC	7 cut(s)	6, 9, 12, 199, 202, 205, 293
FokI	GGATG	2 cut(s)	554, 590
FriOI	GRGCYC	1 cut(s)	424
Fsp4HI	GCNGC	7 cut(s)	6, 9, 12, 199, 202, 205, 293
FspBI	CTAG	1 cut(s)	598
GlaI	GCGC	1 cut(s)	136
GluI	GCNGC	7 cut(s)	6, 9, 12, 199, 202, 205, 293
HaeIII	GGCC	2 cut(s)	8, 155
HapII	CCGG	1 cut(s)	189
HgaI	GACGC	3 cut(s)	134, 181, 238
HhaI	GCGC	1 cut(s)	137
Hin1I	GRCGYC	2 cut(s)	145, 192
Hin6I	GCGC	1 cut(s)	135
HinP1I	GCGC	1 cut(s)	135
HinfI	GANTC	3 cut(s)	255, 329, 341
HpaII	CCGG	1 cut(s)	189
HphI	GGTGA	3 cut(s)	31, 394, 593
Hpy166II	GTNNAC	1 cut(s)	465
Hpy188I	TCNGA	6 cut(s)	176, 214, 328, 388, 489, 568
Hpy188III	TCNNGA	1 cut(s)	226
Hpy8I	GTNNAC	1 cut(s)	465
Hpy99I	CGWCG	4 cut(s)	150, 197, 218, 232
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	3 cut(s)	406, 471, 574
HpyCH4V	TGCA	1 cut(s)	417
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 17, 161, 198, 204, 249, 289, 376
HpyF3I	CTNAG	1 cut(s)	336
Hsp92I	GRCGYC	2 cut(s)	145, 192
HspAI	GCGC	1 cut(s)	135
KspI	CCGCGG	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	388, 430
LmnI	GCTCC	2 cut(s)	308, 427
LpnPI	CCDG	6 cut(s)	99, 137, 169, 202, 253, 444
Lsp1109I	GCAGC	2 cut(s)	23, 279
LweI	GCATC	1 cut(s)	167
MaeI	CTAG	1 cut(s)	598
MaeIII	GTNAC	2 cut(s)	48, 400
MalI	GATC	2 cut(s)	390, 432
MboI	GATC	2 cut(s)	388, 430
MboII	GAAGA	2 cut(s)	438, 562
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	3 cut(s)	116, 505, 526
MlyI	GAGTC	1 cut(s)	335
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	8 cut(s)	47, 93, 116, 136, 191, 446, 454, 577
MseI	TTAA	1 cut(s)	288
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	1 cut(s)	189
MvnI	CGCG	4 cut(s)	135, 232, 252, 479
MwoI	GCNNNNNNNGC	8 cut(s)	11, 17, 161, 198, 204, 249, 289, 376
NdeII	GATC	2 cut(s)	388, 430
NmeAIII	GCCGAG	1 cut(s)	140
NmuCI	GTSAC	2 cut(s)	48, 400
NotI	GCGGCCGC	1 cut(s)	6
PfeI	GAWTC	2 cut(s)	255, 329
PkrI	GCNGC	7 cut(s)	7, 10, 13, 200, 203, 206, 294
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
Psp124BI	GAGCTC	1 cut(s)	424
SacI	GAGCTC	1 cut(s)	424
SacII	CCGCGG	1 cut(s)	253
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	7 cut(s)	6, 9, 12, 199, 202, 205, 293
Sau3AI	GATC	2 cut(s)	388, 430
SchI	GAGTC	1 cut(s)	335
SduI	GDGCHC	1 cut(s)	424
SetI	ASST	6 cut(s)	16, 245, 294, 305, 424, 599
SfaNI	GCATC	1 cut(s)	167
Sfr303I	CCGCGG	1 cut(s)	253
SgrBI	CCGCGG	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	3 cut(s)	116, 505, 526
SspMI	CTAG	1 cut(s)	598
SstI	GAGCTC	1 cut(s)	424
TaaI	ACNGT	3 cut(s)	406, 471, 574
TaqI	TCGA	3 cut(s)	227, 344, 548
TasI	AATT	3 cut(s)	116, 505, 526
TauI	GCSGC	5 cut(s)	8, 11, 201, 204, 207
TfiI	GAWTC	2 cut(s)	255, 329
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	2 cut(s)	463, 474
TseFI	GTSAC	2 cut(s)	48, 400
TseI	GCWGC	2 cut(s)	11, 292
Tsp45I	GTSAC	2 cut(s)	48, 400
TspDTI	ATGAA	1 cut(s)	362
TspGWI	ACGGA	4 cut(s)	250, 295, 388, 536
TspRI	CASTG	2 cut(s)	463, 474
XapI	RAATTY	2 cut(s)	505, 526
XmiI	GTMKAC	1 cut(s)	464
XspI	CTAG	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.