Rw3G016760

Protein of unknown function (DUF760)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0003339
Physical Location & Seq
Reverse (-)
17941333 .. 17945352
4020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G016760.1

Sequence Viewer

Length: 774 bp
ATGCTGAAGCGGATTGAGCCGTTTGACAGCTCCGTTATCTCCAAAGGCGTTTCCGTTTCCGCTAAGGACTCGATGAAGCAGACCATCTCTACTATGCTTGGATTGCTGCCGTCCGATCAGTTCTCCGTCACCGTTAGGGTTTGCAGAGCTCCCCTTGATCGCCTCCTCGCCTCTTCCATAATCACCGGGTATACACTGTGGAACGCGGAGTATCGGATATCGTTGATAAGGAATTTTGACATTTCTACGGAGAATTCTGTGGCTTTGTATGGGTCGAAGATAGAGGGGAGTTCGGAGACGGTGGATGGTGAGGAAAGGGGTAGCGAGAATGGATTTGGGGCGAGTAATCAATACCTGGGCTCAACAACTCGTCAAGTTTTCGGGGATTTGTCTCCGGAGGCTTTGAATTACATCCAGAGGTTGCAATCGGAGTTAACTAATGTTAAGGAGTCTTTTTATCTATCCAATTCATCACTTGAAATGAAATTGATGCTCAATTCTAATCTTTATATCTGCCTGGTTGTCTATGCTATCTCTACTATGCGGTCATATATACTATCATATCGGTTTTCCTGCCAACCAGCGGCTGTAGAAGTCGAGTGCCTCCCGTGGCTTGTATTCAGGGACGGTGTGTCCAGCTCCCTGTGTCCCTTAATATCTGTTGTGTGTTATGAATCTCAGACAACAAAGAATGAGTTATATCTGTTTGTTTGCTTGTGCTTTGGCAACTTCAACAGGGGTGATCATCAAGAGATCTGTCTCTCCTGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

257

Amino Acids

28.65

Weight (kDa)

5.07

Isoelectric Point (pI)

45.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 2 - 78 1.5e-20 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 191
AccII CGCG 1 cut(s) 206
AccIII TCCGGA 1 cut(s) 394
AciI CCGC 5 cut(s) 10, 60, 206, 544, 584
AcsI RAATTY 2 cut(s) 232, 253
AcuI CTGAAG 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 583
AgsI TTSAA 3 cut(s) 406, 479, 733
AhdI GACNNNNNGTC 1 cut(s) 631
AjnI CCWGG 2 cut(s) 354, 516
AluBI AGCT 3 cut(s) 30, 149, 639
AluI AGCT 3 cut(s) 30, 149, 639
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 3 cut(s) 290, 396, 764
AlwNI CAGNNNCTG 1 cut(s) 587
Aor13HI TCCGGA 1 cut(s) 394
ApeKI GCWGC 1 cut(s) 106
ApoI RAATTY 2 cut(s) 232, 253
AsuC2I CCSGG 1 cut(s) 187
AsuHPI GGTGA 4 cut(s) 121, 175, 320, 752
BanII GRGCYC 2 cut(s) 151, 362
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 93
BccI CCATC 2 cut(s) 92, 299
BceAI ACGGC 2 cut(s) 4, 94
BciT130I CCWGG 2 cut(s) 356, 518
BclI TGATCA 1 cut(s) 742
BcnI CCSGG 1 cut(s) 187
BcoDI GTCTC 3 cut(s) 290, 396, 764
BfmI CTRYAG 1 cut(s) 588
BglII AGATCT 1 cut(s) 753
BisI GCNGC 2 cut(s) 107, 585
BlsI GCNGC 2 cut(s) 108, 586
Bme1390I CCNGG 3 cut(s) 187, 356, 518
BmeRI GACNNNNNGTC 1 cut(s) 631
BmrFI CCNGG 3 cut(s) 187, 356, 518
BmsI GCATC 1 cut(s) 480
Bpu10I CCTNAGC 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 187
BsaJI CCNNGG 2 cut(s) 355, 608
BsaWI WCCGGW 1 cut(s) 394
Bsc4I CCNNNNNNNGG 1 cut(s) 583
BseAI TCCGGA 1 cut(s) 394
BseBI CCWGG 2 cut(s) 356, 518
BseDI CCNNGG 2 cut(s) 355, 608
BseGI GGATG 2 cut(s) 310, 411
BseLI CCNNNNNNNGG 1 cut(s) 583
BseMII CTCAG 1 cut(s) 692
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 93
Bsh1236I CGCG 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 151
BsiSI CCGG 2 cut(s) 186, 395
BslFI GGGAC 2 cut(s) 633, 638
BslI CCNNNNNNNGG 1 cut(s) 583
BsmAI GTCTC 3 cut(s) 290, 396, 764
BsmBI CGTCTC 1 cut(s) 290
BsmFI GGGAC 2 cut(s) 633, 638
Bsp1286I GDGCHC 2 cut(s) 151, 362
Bsp13I TCCGGA 1 cut(s) 394
Bsp143I GATC 4 cut(s) 115, 157, 742, 753
BspACI CCGC 5 cut(s) 10, 60, 206, 544, 584
BspCNI CTCAG 1 cut(s) 691
BspEI TCCGGA 1 cut(s) 394
BspFNI CGCG 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 355, 608
BssMI GATC 4 cut(s) 115, 157, 742, 753
BssNAI GTATAC 1 cut(s) 192
Bst1107I GTATAC 1 cut(s) 192
Bst2UI CCWGG 2 cut(s) 356, 518
Bst4CI ACNGT 4 cut(s) 133, 198, 301, 629
Bst6I CTCTTC 1 cut(s) 178
BstDEI CTNAG 2 cut(s) 63, 678
BstDSI CCRYGG 1 cut(s) 608
BstF5I GGATG 2 cut(s) 310, 411
BstFNI CGCG 1 cut(s) 206
BstKTI GATC 4 cut(s) 118, 160, 745, 756
BstMAI GTCTC 3 cut(s) 290, 396, 764
BstMBI GATC 4 cut(s) 115, 157, 742, 753
BstMWI GCNNNNNNNGC 2 cut(s) 16, 103
BstNI CCWGG 2 cut(s) 356, 518
BstSCI CCNGG 3 cut(s) 185, 354, 516
BstSFI CTRYAG 1 cut(s) 588
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 93
BstX2I RGATCY 1 cut(s) 753
BstYI RGATCY 1 cut(s) 753
BstZ17I GTATAC 1 cut(s) 192
BtgI CCRYGG 1 cut(s) 608
BtsCI GGATG 2 cut(s) 310, 411
BtsIMutI CAGTG 1 cut(s) 194
CaiI CAGNNNCTG 1 cut(s) 587
CviJI RGCY 9 cut(s) 19, 30, 149, 263, 360, 401, 587, 613, 639
CviKI_1 RGCY 9 cut(s) 19, 30, 149, 263, 360, 401, 587, 613, 639
DdeI CTNAG 2 cut(s) 63, 678
DpnI GATC 4 cut(s) 117, 159, 744, 755
DpnII GATC 4 cut(s) 115, 157, 742, 753
DriI GACNNNNNGTC 1 cut(s) 631
Eam1104I CTCTTC 1 cut(s) 178
Eam1105I GACNNNNNGTC 1 cut(s) 631
EarI CTCTTC 1 cut(s) 178
Ecl136II GAGCTC 1 cut(s) 149
Eco24I GRGCYC 2 cut(s) 151, 362
Eco32I GATATC 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 26
EcoICRI GAGCTC 1 cut(s) 149
EcoRI GAATTC 1 cut(s) 253
EcoRII CCWGG 2 cut(s) 354, 516
EcoRV GATATC 1 cut(s) 219
EcoT38I GRGCYC 2 cut(s) 151, 362
Esp3I CGTCTC 1 cut(s) 290
FaqI GGGAC 2 cut(s) 633, 638
FbaI TGATCA 1 cut(s) 742
FblI GTMKAC 1 cut(s) 191
Fnu4HI GCNGC 2 cut(s) 107, 585
FokI GGATG 2 cut(s) 317, 398
FriOI GRGCYC 2 cut(s) 151, 362
Fsp4HI GCNGC 2 cut(s) 107, 585
GluI GCNGC 2 cut(s) 107, 585
HapII CCGG 2 cut(s) 186, 395
HincII GTYRAC 1 cut(s) 435
HindII GTYRAC 1 cut(s) 435
HinfI GANTC 3 cut(s) 68, 449, 674
HpaI GTTAAC 1 cut(s) 435
HpaII CCGG 2 cut(s) 186, 395
HphI GGTGA 4 cut(s) 121, 175, 320, 752
Hpy166II GTNNAC 2 cut(s) 192, 435
Hpy188I TCNGA 5 cut(s) 115, 216, 295, 430, 681
Hpy188III TCNNGA 3 cut(s) 395, 415, 749
Hpy8I GTNNAC 2 cut(s) 192, 435
HpyCH4III ACNGT 4 cut(s) 133, 198, 301, 629
HpyCH4V TGCA 2 cut(s) 144, 424
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 103
HpyF3I CTNAG 2 cut(s) 63, 678
Kpn2I TCCGGA 1 cut(s) 394
Ksp22I TGATCA 1 cut(s) 742
KspAI GTTAAC 1 cut(s) 435
Kzo9I GATC 4 cut(s) 115, 157, 742, 753
LmnI GCTCC 3 cut(s) 35, 154, 644
Lsp1109I GCAGC 1 cut(s) 93
LweI GCATC 1 cut(s) 480
MaeIII GTNAC 1 cut(s) 127
MalI GATC 4 cut(s) 117, 159, 744, 755
MboI GATC 4 cut(s) 115, 157, 742, 753
MboII GAAGA 2 cut(s) 165, 289
MflI RGATCY 1 cut(s) 753
MhlI GDGCHC 2 cut(s) 151, 362
MluCI AATT 6 cut(s) 232, 253, 406, 466, 485, 496
MlyI GAGTC 2 cut(s) 62, 458
MnlI CCTC 8 cut(s) 173, 176, 181, 277, 304, 391, 411, 614
MroI TCCGGA 1 cut(s) 394
MseI TTAA 3 cut(s) 434, 444, 653
MspA1I CMGCKG 1 cut(s) 584
MspI CCGG 2 cut(s) 186, 395
MspR9I CCNGG 3 cut(s) 187, 356, 518
MvaI CCWGG 2 cut(s) 356, 518
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 16, 103
NciI CCSGG 1 cut(s) 187
NdeII GATC 4 cut(s) 115, 157, 742, 753
NmuCI GTSAC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 674
PkrI GCNGC 2 cut(s) 108, 586
PleI GAGTC 2 cut(s) 62, 457
PpsI GAGTC 2 cut(s) 62, 457
Psp124BI GAGCTC 1 cut(s) 151
Psp6I CCWGG 2 cut(s) 354, 516
PspGI CCWGG 2 cut(s) 354, 516
PstNI CAGNNNCTG 1 cut(s) 587
PsuI RGATCY 1 cut(s) 753
SacI GAGCTC 1 cut(s) 151
SaqAI TTAA 3 cut(s) 434, 444, 653
SatI GCNGC 2 cut(s) 107, 585
Sau3AI GATC 4 cut(s) 115, 157, 742, 753
SchI GAGTC 2 cut(s) 62, 458
ScrFI CCNGG 3 cut(s) 187, 356, 518
SduI GDGCHC 2 cut(s) 151, 362
SetI ASST 5 cut(s) 32, 151, 357, 422, 641
SfaNI GCATC 1 cut(s) 480
SfcI CTRYAG 1 cut(s) 588
Sse9I AATT 6 cut(s) 232, 253, 406, 466, 485, 496
SsiI CCGC 5 cut(s) 10, 60, 206, 544, 584
SstI GAGCTC 1 cut(s) 151
StyD4I CCNGG 3 cut(s) 185, 354, 516
TaaI ACNGT 4 cut(s) 133, 198, 301, 629
TaqI TCGA 3 cut(s) 71, 275, 597
TasI AATT 6 cut(s) 232, 253, 406, 466, 485, 496
TauI GCSGC 1 cut(s) 587
TfiI GAWTC 1 cut(s) 674
Tru1I TTAA 3 cut(s) 434, 444, 653
Tru9I TTAA 3 cut(s) 434, 444, 653
TscAI CASTG 1 cut(s) 201
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 4 cut(s) 89, 459, 497, 687
TspGWI ACGGA 4 cut(s) 22, 43, 115, 263
TspRI CASTG 1 cut(s) 201
XapI RAATTY 2 cut(s) 232, 253
XmiI GTMKAC 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.