Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003339

Physical Location & Seq

Genomic Coordinates Forward (+)

3104907 .. 3107327

Gene Structure 2421 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1042400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCGGCGACAGCTCGCGCCGTCATTCTCTCCCGCTTCACCGACCTGTCTCTCAAGCCTTCCCAGCCGCCGCCCCCGATTACCGGCCACCTCCTCGTCCGCCCCTTACTCCCCTCCTCCTTCCGGCGGCGTCGTTTGTCCGCCAGCTCGACTTCCGCCGTCCGATGCCTCATGTCCGGCGTCGACGGCGGCGGCGTGTCGGACGAGTTCGTCTCGACTCGGAAGTCCGGCTTCGACCGTGGCTTCTCCGTGATTGCGAACATGCTCAAGAAAATTGAGCCCCTCGACACCTCCGTTATCTCCAAGGGCGTTACGGATTCCGCCAGGGACTCCATGAAGCAGACCATTTCTACTATGCTGGGGTTGCTCCCGTCCTATCAGTTCTCCGTCACCGTTAGGGTTTCCAAAGCCCCTCTCCATCGCCTCCTCACATCCTCGATAATCACCGGATATACACTGTGGAACGCGGAGTATCGGATATCGTTGATGAGGAATTTCGACAAATCCACGGAGAATTCTGTGCCGTTGGATCGGTCGGAGATCGATGGGGTGTCGGATAGGGTGGAGAGTGAGGAAAGGGATGATGGAAATGGTATCGGGGTGAGTGGCGAACTCTTGGATTCAGCAACTCCCCATGTTTTTGGCGATTTGCCTCCGGAGGCTTTGAATTGTATCCAGAGGTTGGAGTCAGAGTTGACAAATGTGAAGGAGGAACTGAAGGCGCTAAAGCAGGAAAATATGCAATTAGAATATGACAGAGGACCTAGGAACGATTTATTGGAGTATCTACGGTCTCTAGATTCTGATATGGTGACTGAACTATCTCGACCGACATCATTTGAGGTGGAGGAAATTATACACCAGCTTGTTCAAAATGTATTGCAGCGATTCTTCAAGGACGGTACTTCCTCAGACTTTGTGGAAGATTTGGTGACAGGGGACAGTGAGAATGGCCTAGATGCTGATGGCGAACTTGACACCATAGGAACTTCACGAGATTACCTAGCGAAGCTGCTTTTCTGGTGTATGTTGTTAGGTCATCATTTAAGAGGGTTGGAGAACCGATTGCATTTGAGTTGCGTTGTTGGATTATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

366

Amino Acids

40.44

Weight (kDa)

5.17

Isoelectric Point (pI)

42.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	87 - 165	3.8e-21	Protein of unknown function (DUF760)
DUF760	PF05542	258 - 361	1.2e-22	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14970
fragaria_vesca	FvH4_6g49830 FvH4_6g49830 FvH4_6g49830 FvH4_6g49830
malus_domestica	MD09G1041100.v1.1 MD17G1042400.v1.1
prunus_persica	Prupe.3G276600_v2.0.a1 Prupe.3G276600_v2.0.a1
pyrus_communis	pycom17g03800
rosa_chinensis	RchiOBHm_Chr2g0169981 RchiOBHm_Chr4g0386121 RchiOBHm_Chr4g0386261 RchiOBHm_Chr4g0386271
rosa_laevigata	RLG00000021916
rosa_multiflora	Rmu_sc0002862.1_g000014 Rmu_sc0003415.1_g000008 Rmu_sc0013078.1_g000018 Rmu_ssc0000389.1_g000006
rosa_roxburghii	Rroxscaffold_2G00081690 Rroxscaffold_5G00333850
rosa_rugosa	Rorug02G0544900
rosa_samantha	Rh2AG616900 Rh2CG598000 Rh2DG639900 Rh3CG265700 Rh4AG010800 Rh4BG007900 Rh4DG118700 Rh5DG240500 Rh7DG285000 Rh7DG341500
rosa_wichuraiana	Rw2G029160 Rw2G034420 Rw2G051100 Rw3G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	209, 223
AccB7I	CCANNNNNTGG	1 cut(s)	682
AccI	GTMKAC	1 cut(s)	183
AccII	CGCG	2 cut(s)	18, 467
AccIII	TCCGGA	1 cut(s)	655
AclWI	GGATC	1 cut(s)	537
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	2 cut(s)	493, 514
AcuI	CTGAAG	1 cut(s)	737
AcyI	GRCGYC	2 cut(s)	130, 180
AfaI	GTAC	1 cut(s)	904
AfiI	CCNNNNNNNGG	4 cut(s)	83, 123, 126, 682
AgsI	TTSAA	3 cut(s)	667, 872, 895
AjnI	CCWGG	1 cut(s)	323
AjuI	GAANNNNNNNTTGG	2 cut(s)	761, 793
AluBI	AGCT	4 cut(s)	14, 147, 865, 1012
AluI	AGCT	4 cut(s)	14, 147, 865, 1012
Alw26I	GTCTC	3 cut(s)	54, 217, 798
AlwI	GGATC	1 cut(s)	537
Aor13HI	TCCGGA	1 cut(s)	655
AoxI	GGCC	2 cut(s)	85, 952
ApeKI	GCWGC	2 cut(s)	883, 1012
ApoI	RAATTY	2 cut(s)	493, 514
AspA2I	CCTAGG	1 cut(s)	764
AspLEI	GCGC	2 cut(s)	20, 724
AspS9I	GGNCC	1 cut(s)	761
AsuHPI	GGTGA	6 cut(s)	31, 382, 436, 613, 823, 943
AvaII	GGWCC	1 cut(s)	761
AvrII	CCTAGG	1 cut(s)	764
BanII	GRGCYC	1 cut(s)	282
BauI	CACGAG	1 cut(s)	993
BbvI	GCAGC	2 cut(s)	895, 999
BccI	CCATC	4 cut(s)	426, 539, 578, 959
BceAI	ACGGC	4 cut(s)	5, 143, 202, 508
BciT130I	CCWGG	1 cut(s)	325
BciVI	GTATCC	1 cut(s)	683
BcoDI	GTCTC	3 cut(s)	54, 217, 798
BfaI	CTAG	4 cut(s)	765, 797, 956, 1004
BfoI	RGCGCY	1 cut(s)	725
BfuI	GTATCC	1 cut(s)	683
BisI	GCNGC	8 cut(s)	6, 68, 71, 128, 190, 193, 884, 1013
BlnI	CCTAGG	1 cut(s)	764
BlsI	GCNGC	8 cut(s)	7, 69, 72, 129, 191, 194, 885, 1014
Bme1390I	CCNGG	1 cut(s)	325
Bme18I	GGWCC	1 cut(s)	761
BmgT120I	GGNCC	1 cut(s)	761
BmrFI	CCNGG	1 cut(s)	325
BmsI	GCATC	2 cut(s)	155, 949
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
BpuEI	CTTGAG	2 cut(s)	38, 251
Bsa29I	ATCGAT	1 cut(s)	543
BsaHI	GRCGYC	2 cut(s)	130, 180
BsaI	GGTCTC	1 cut(s)	798
BsaJI	CCNNGG	5 cut(s)	238, 303, 324, 507, 764
BsaWI	WCCGGW	2 cut(s)	446, 655
BsaXI	ACNNNNNCTCC	2 cut(s)	677, 707
Bsc4I	CCNNNNNNNGG	4 cut(s)	83, 123, 126, 682
Bse118I	RCCGGY	1 cut(s)	83
BseAI	TCCGGA	1 cut(s)	655
BseBI	CCWGG	1 cut(s)	325
BseCI	ATCGAT	1 cut(s)	543
BseDI	CCNNGG	5 cut(s)	238, 303, 324, 507, 764
BseGI	GGATG	2 cut(s)	431, 586
BseLI	CCNNNNNNNGG	4 cut(s)	83, 123, 126, 682
BseMII	CTCAG	1 cut(s)	924
BseRI	GAGGAG	3 cut(s)	83, 106, 416
BseXI	GCAGC	2 cut(s)	895, 999
BseYI	CCCAGC	2 cut(s)	63, 358
Bsh1236I	CGCG	2 cut(s)	18, 467
Bsh1285I	CGRYCG	3 cut(s)	238, 536, 830
BshFI	GGCC	2 cut(s)	87, 954
BshVI	ATCGAT	1 cut(s)	543
BsiEI	CGRYCG	3 cut(s)	238, 536, 830
BsiSI	CCGG	6 cut(s)	84, 124, 177, 228, 447, 656
BslFI	GGGAC	2 cut(s)	341, 953
BslI	CCNNNNNNNGG	4 cut(s)	83, 123, 126, 682
BsmAI	GTCTC	3 cut(s)	54, 217, 798
BsmBI	CGTCTC	1 cut(s)	217
BsmFI	GGGAC	2 cut(s)	341, 953
BsnI	GGCC	2 cut(s)	87, 954
Bso31I	GGTCTC	1 cut(s)	798
Bsp1286I	GDGCHC	1 cut(s)	282
Bsp13I	TCCGGA	1 cut(s)	655
Bsp143I	GATC	2 cut(s)	529, 540
BspANI	GGCC	2 cut(s)	87, 954
BspCNI	CTCAG	1 cut(s)	923
BspDI	ATCGAT	1 cut(s)	543
BspEI	TCCGGA	1 cut(s)	655
BspFNI	CGCG	2 cut(s)	18, 467
BspPI	GGATC	1 cut(s)	537
BspTNI	GGTCTC	1 cut(s)	798
BsrFI	RCCGGY	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	83
BssECI	CCNNGG	5 cut(s)	238, 303, 324, 507, 764
BssMI	GATC	2 cut(s)	529, 540
BssNI	GRCGYC	2 cut(s)	130, 180
BssSI	CACGAG	1 cut(s)	993
BssT1I	CCWWGG	2 cut(s)	303, 764
Bst2BI	CACGAG	1 cut(s)	993
Bst2UI	CCWGG	1 cut(s)	325
Bst4CI	ACNGT	6 cut(s)	239, 394, 459, 792, 902, 944
BstACI	GRCGYC	2 cut(s)	130, 180
BstC8I	GCNNGC	2 cut(s)	16, 145
BstDEI	CTNAG	1 cut(s)	910
BstDSI	CCRYGG	2 cut(s)	238, 507
BstF5I	GGATG	2 cut(s)	431, 586
BstFNI	CGCG	2 cut(s)	18, 467
BstH2I	RGCGCY	1 cut(s)	725
BstHHI	GCGC	2 cut(s)	20, 724
BstKTI	GATC	2 cut(s)	532, 543
BstMAI	GTCTC	3 cut(s)	54, 217, 798
BstMBI	GATC	2 cut(s)	529, 540
BstMCI	CGRYCG	3 cut(s)	238, 536, 830
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 64, 186, 364
BstNI	CCWGG	1 cut(s)	325
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	1 cut(s)	323
BstUI	CGCG	2 cut(s)	18, 467
BstV1I	GCAGC	2 cut(s)	895, 999
BstXI	CCANNNNNNTGG	1 cut(s)	641
Bsu15I	ATCGAT	1 cut(s)	543
BsuI	GTATCC	1 cut(s)	683
BsuRI	GGCC	2 cut(s)	87, 954
BsuTUI	ATCGAT	1 cut(s)	543
BtgI	CCRYGG	2 cut(s)	238, 507
BtgZI	GCGATG	1 cut(s)	404
BtsCI	GGATG	2 cut(s)	431, 586
BtsIMutI	CAGTG	2 cut(s)	455, 949
Cac8I	GCNNGC	2 cut(s)	16, 145
CfoI	GCGC	2 cut(s)	20, 724
Cfr10I	RCCGGY	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	761
ClaI	ATCGAT	1 cut(s)	543
CseI	GACGC	2 cut(s)	119, 169
Csp6I	GTAC	1 cut(s)	903
CviAII	CATG	4 cut(s)	172, 262, 334, 635
CviQI	GTAC	1 cut(s)	903
DdeI	CTNAG	1 cut(s)	910
DpnI	GATC	2 cut(s)	531, 542
DpnII	GATC	2 cut(s)	529, 540
DrdI	GACNNNNNNGTC	2 cut(s)	209, 223
DseDI	GACNNNNNNGTC	2 cut(s)	209, 223
EaeI	YGGCCR	1 cut(s)	85
EciI	GGCGGA	4 cut(s)	89, 130, 145, 310
Eco130I	CCWWGG	2 cut(s)	303, 764
Eco24I	GRGCYC	1 cut(s)	282
Eco31I	GGTCTC	1 cut(s)	798
Eco32I	GATATC	1 cut(s)	480
Eco47I	GGWCC	1 cut(s)	761
Eco57I	CTGAAG	1 cut(s)	737
EcoO109I	RGGNCCY	1 cut(s)	761
EcoRI	GAATTC	1 cut(s)	514
EcoRII	CCWGG	1 cut(s)	323
EcoRV	GATATC	1 cut(s)	480
EcoT14I	CCWWGG	2 cut(s)	303, 764
EcoT38I	GRGCYC	1 cut(s)	282
ErhI	CCWWGG	2 cut(s)	303, 764
Esp3I	CGTCTC	1 cut(s)	217
FaeI	CATG	4 cut(s)	175, 265, 337, 638
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FaqI	GGGAC	2 cut(s)	341, 953
FatI	CATG	4 cut(s)	171, 261, 333, 634
FauI	CCCGC	1 cut(s)	41
FblI	GTMKAC	1 cut(s)	183
Fnu4HI	GCNGC	8 cut(s)	6, 68, 71, 128, 190, 193, 884, 1013
FokI	GGATG	2 cut(s)	418, 593
FriOI	GRGCYC	1 cut(s)	282
Fsp4HI	GCNGC	8 cut(s)	6, 68, 71, 128, 190, 193, 884, 1013
FspBI	CTAG	4 cut(s)	765, 797, 956, 1004
GlaI	GCGC	2 cut(s)	19, 723
GluI	GCNGC	8 cut(s)	6, 68, 71, 128, 190, 193, 884, 1013
GsaI	CCCAGC	2 cut(s)	67, 362
HaeII	RGCGCY	1 cut(s)	725
HaeIII	GGCC	2 cut(s)	87, 954
HapII	CCGG	6 cut(s)	84, 124, 177, 228, 447, 656
HgaI	GACGC	2 cut(s)	119, 169
HhaI	GCGC	2 cut(s)	20, 724
Hin1I	GRCGYC	2 cut(s)	130, 180
Hin1II	CATG	4 cut(s)	175, 265, 337, 638
Hin6I	GCGC	2 cut(s)	18, 722
HinP1I	GCGC	2 cut(s)	18, 722
HincII	GTYRAC	2 cut(s)	184, 696
HindII	GTYRAC	2 cut(s)	184, 696
HinfI	GANTC	7 cut(s)	217, 317, 329, 620, 686, 800, 888
HpaII	CCGG	6 cut(s)	84, 124, 177, 228, 447, 656
HphI	GGTGA	6 cut(s)	31, 382, 436, 613, 823, 943
Hpy166II	GTNNAC	2 cut(s)	184, 696
Hpy188I	TCNGA	9 cut(s)	164, 202, 222, 477, 538, 556, 691, 805, 913
Hpy188III	TCNNGA	7 cut(s)	214, 268, 656, 676, 797, 825, 993
Hpy8I	GTNNAC	2 cut(s)	184, 696
Hpy99I	CGWCG	3 cut(s)	135, 185, 188
HpyAV	CCTTC	4 cut(s)	69, 130, 700, 712
HpyCH4III	ACNGT	6 cut(s)	239, 394, 459, 792, 902, 944
HpyCH4V	TGCA	3 cut(s)	742, 883, 1069
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 64, 186, 364
HpyF3I	CTNAG	1 cut(s)	910
Hsp92I	GRCGYC	2 cut(s)	130, 180
Hsp92II	CATG	4 cut(s)	175, 265, 337, 638
HspAI	GCGC	2 cut(s)	18, 722
Kpn2I	TCCGGA	1 cut(s)	655
Kzo9I	GATC	2 cut(s)	529, 540
LmnI	GCTCC	1 cut(s)	372
Lsp1109I	GCAGC	2 cut(s)	895, 999
LweI	GCATC	2 cut(s)	155, 949
MaeI	CTAG	4 cut(s)	765, 797, 956, 1004
MaeIII	GTNAC	4 cut(s)	310, 388, 811, 931
MalI	GATC	2 cut(s)	531, 542
MboI	GATC	2 cut(s)	529, 540
MboII	GAAGA	2 cut(s)	883, 935
MhlI	GDGCHC	1 cut(s)	282
MluCI	AATT	6 cut(s)	273, 493, 514, 667, 743, 852
MlyI	GAGTC	3 cut(s)	211, 323, 695
MmeI	TCCRAC	7 cut(s)	180, 507, 516, 534, 663, 1035, 1066
MroI	TCCGGA	1 cut(s)	655
MseI	TTAA	1 cut(s)	1046
MspI	CCGG	6 cut(s)	84, 124, 177, 228, 447, 656
MspR9I	CCNGG	1 cut(s)	325
MvaI	CCWGG	1 cut(s)	325
MvnI	CGCG	2 cut(s)	18, 467
MwoI	GCNNNNNNNGC	4 cut(s)	11, 64, 186, 364
NdeII	GATC	2 cut(s)	529, 540
NlaIII	CATG	4 cut(s)	175, 265, 337, 638
NmuCI	GTSAC	3 cut(s)	388, 811, 931
NspI	RCATGY	1 cut(s)	265
PcsI	WCGNNNNNNNCGW	2 cut(s)	192, 291
PfeI	GAWTC	4 cut(s)	317, 620, 800, 888
PflMI	CCANNNNNTGG	1 cut(s)	682
PkrI	GCNGC	8 cut(s)	7, 69, 72, 129, 191, 194, 885, 1014
PleI	GAGTC	3 cut(s)	211, 323, 694
PpsI	GAGTC	3 cut(s)	211, 323, 694
PpuMI	RGGWCCY	1 cut(s)	761
Psp5II	RGGWCCY	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	323
PspFI	CCCAGC	2 cut(s)	63, 358
PspGI	CCWGG	1 cut(s)	323
PspPI	GGNCC	1 cut(s)	761
PspPPI	RGGWCCY	1 cut(s)	761
RsaI	GTAC	1 cut(s)	904
RsaNI	GTAC	1 cut(s)	903
SalI	GTCGAC	1 cut(s)	182
SaqAI	TTAA	1 cut(s)	1046
SatI	GCNGC	8 cut(s)	6, 68, 71, 128, 190, 193, 884, 1013
Sau3AI	GATC	2 cut(s)	529, 540
Sau96I	GGNCC	1 cut(s)	761
SchI	GAGTC	3 cut(s)	211, 323, 695
ScrFI	CCNGG	1 cut(s)	325
SduI	GDGCHC	1 cut(s)	282
SfaNI	GCATC	2 cut(s)	155, 949
SgrDI	CGTCGACG	1 cut(s)	182
SinI	GGWCC	1 cut(s)	761
SmlI	CTYRAG	2 cut(s)	53, 266
SmoI	CTYRAG	2 cut(s)	53, 266
Sse9I	AATT	6 cut(s)	273, 493, 514, 667, 743, 852
SspMI	CTAG	4 cut(s)	765, 797, 956, 1004
StyD4I	CCNGG	1 cut(s)	323
StyI	CCWWGG	2 cut(s)	303, 764
TaaI	ACNGT	6 cut(s)	239, 394, 459, 792, 902, 944
TaqI	TCGA	9 cut(s)	149, 183, 215, 234, 285, 437, 498, 543, 826
TaqII	GACCGA	2 cut(s)	522, 844
TasI	AATT	6 cut(s)	273, 493, 514, 667, 743, 852
TauI	GCSGC	6 cut(s)	8, 70, 73, 130, 192, 195
TfiI	GAWTC	4 cut(s)	317, 620, 800, 888
Tru1I	TTAA	1 cut(s)	1046
Tru9I	TTAA	1 cut(s)	1046
TscAI	CASTG	2 cut(s)	462, 949
TseFI	GTSAC	3 cut(s)	388, 811, 931
TseI	GCWGC	2 cut(s)	883, 1012
Tsp45I	GTSAC	3 cut(s)	388, 811, 931
TspDTI	ATGAA	1 cut(s)	350
TspGWI	ACGGA	5 cut(s)	238, 283, 329, 376, 524
TspRI	CASTG	2 cut(s)	462, 949
Van91I	CCANNNNNTGG	1 cut(s)	682
VpaK11BI	GGWCC	1 cut(s)	761
XapI	RAATTY	2 cut(s)	493, 514
XbaI	TCTAGA	1 cut(s)	796
XceI	RCATGY	1 cut(s)	265
XmaJI	CCTAGG	1 cut(s)	764
XmiI	GTMKAC	1 cut(s)	183
XspI	CTAG	4 cut(s)	765, 797, 956, 1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.