Rw2G029160

Protein of unknown function (DUF760)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0003339
Physical Location & Seq
Forward (+)
47128401 .. 47131320
2920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G029160.1

Sequence Viewer

Length: 885 bp
ATGGCGGCCGCAGCTCGGGCTTTCACTCTCTCTCGCCTCACCGACCTGTCACTCAAGGCCCGCCACCCACAACCACCACCGCCTCCCGTTTCCCGCCACCACCTCCTCGCCCGCCAATTACTTCCCTCCTTCCGCGCCCAACAGCGTCGTCTGGCCTGCTCAGCTTCCACAATCCGATGCCTCATCTCCGGCGTCGGCGGCGGCGGCGTGTCCGACGAGTTCGTCTCGACGCGGAAGTCCGGCTTCGACCGCGGATTCTCCGTTATCGCCAATATGCTGAAGCGGATTGAGCCGCTTGACAGCTCCGTTATCTCCAAAGGCGTTTCCAATTCCGCTAAGGACTCGATGAAGCAGACCATCTCTACTATGCTTGGATTGCTGCCGTCCGATCAGTTCTCCGTCACCGTTAGGGTTTGCAGAGCTCCCCTTGATCGCCTCCTCGCCTCTTCCATAATCACCGGGTATACACTGTGGAACGCGGAGTATCGGATATTGTTGATAAGGAATTTTGACATTTCTACGGAGAATTCTATGGCTTTGTATGGGTCGAAGATAGATGGGAGTTCGGAGACGGTGGATGGTGAGGAAAGGGGTAGCAAAGATGGATTTGGGGCGAGTAATCAATACCTGGGCTCAACAACTCCTCAAGTTTTCGGGGATTTGTCTCCGGAGGCTTTGAATTACATCCAGAGGTTGCAATCGGAGTTAACTAATGTTAAGGAGCGCGGAATCAAAGACCTTTCTTTCCTTCGATCCCTTTCTTTTCAATTGAAAAATGCTACATTTAAAATACAGTCATGGCATCAGATATTCCAAAAAGAAAAGCGAAAATATCTTTGCAAGCTAATTGTTCTTTTTATCTATCCAATTCATCACTTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

294

Amino Acids

32.68

Weight (kDa)

9.88

Isoelectric Point (pI)

42.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 91 - 169 9.7e-21 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 221, 235
AccI GTMKAC 1 cut(s) 464
AccII CGCG 5 cut(s) 135, 232, 252, 479, 726
AccIII TCCGGA 1 cut(s) 667
AclWI GGATC 1 cut(s) 747
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 2 cut(s) 505, 526
AcuI CTGAAG 1 cut(s) 299
AcyI GRCGYC 1 cut(s) 192
AfiI CCNNNNNNNGG 1 cut(s) 15
AgsI TTSAA 4 cut(s) 679, 767, 772, 880
AjnI CCWGG 1 cut(s) 627
AluBI AGCT 5 cut(s) 14, 164, 303, 422, 844
AluI AGCT 5 cut(s) 14, 164, 303, 422, 844
Alw21I GWGCWC 1 cut(s) 424
Alw26I GTCTC 3 cut(s) 229, 563, 669
AlwI GGATC 1 cut(s) 747
Ama87I CYCGRG 1 cut(s) 15
Aor13HI TCCGGA 1 cut(s) 667
AoxI GGCC 3 cut(s) 6, 57, 153
ApeKI GCWGC 2 cut(s) 11, 379
ApoI RAATTY 2 cut(s) 505, 526
AspLEI GCGC 2 cut(s) 137, 726
AspS9I GGNCC 1 cut(s) 58
AsuC2I CCSGG 1 cut(s) 460
AsuHPI GGTGA 4 cut(s) 31, 394, 448, 593
AvaI CYCGRG 1 cut(s) 15
BanII GRGCYC 2 cut(s) 424, 635
Bbv12I GWGCWC 1 cut(s) 424
BbvI GCAGC 2 cut(s) 23, 366
BccI CCATC 4 cut(s) 365, 551, 572, 596
BceAI ACGGC 1 cut(s) 367
BciT130I CCWGG 1 cut(s) 629
BcnI CCSGG 1 cut(s) 460
BcoDI GTCTC 3 cut(s) 229, 563, 669
BisI GCNGC 8 cut(s) 6, 9, 12, 199, 202, 205, 293, 380
BlpI GCTNAGC 1 cut(s) 160
BlsI GCNGC 8 cut(s) 7, 10, 13, 200, 203, 206, 294, 381
Bme1390I CCNGG 2 cut(s) 460, 629
BmeT110I CYCGRG 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 58
BmrFI CCNGG 2 cut(s) 460, 629
BmsI GCATC 2 cut(s) 167, 811
BplI GAGNNNNNCTC 2 cut(s) 209, 241
Bpu10I CCTNAGC 1 cut(s) 336
Bpu1102I GCTNAGC 1 cut(s) 160
BpuEI CTTGAG 2 cut(s) 38, 630
BpuMI CCSGG 1 cut(s) 460
BsaHI GRCGYC 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 250, 628
BsaWI WCCGGW 1 cut(s) 667
Bsc4I CCNNNNNNNGG 1 cut(s) 15
BseAI TCCGGA 1 cut(s) 667
BseBI CCWGG 1 cut(s) 629
BseDI CCNNGG 2 cut(s) 250, 628
BseGI GGATG 2 cut(s) 583, 684
BseLI CCNNNNNNNGG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 174
BseRI GAGGAG 3 cut(s) 95, 428, 633
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 2 cut(s) 23, 366
Bsh1236I CGCG 5 cut(s) 135, 232, 252, 479, 726
Bsh1285I CGRYCG 2 cut(s) 9, 250
BshFI GGCC 3 cut(s) 8, 59, 155
BsiEI CGRYCG 2 cut(s) 9, 250
BsiHKAI GWGCWC 1 cut(s) 424
BsiHKCI CYCGRG 1 cut(s) 15
BsiSI CCGG 4 cut(s) 189, 240, 459, 668
BslI CCNNNNNNNGG 1 cut(s) 15
BsmAI GTCTC 3 cut(s) 229, 563, 669
BsmBI CGTCTC 2 cut(s) 229, 563
BsnI GGCC 3 cut(s) 8, 59, 155
BsoBI CYCGRG 1 cut(s) 15
Bsp1286I GDGCHC 2 cut(s) 424, 635
Bsp13I TCCGGA 1 cut(s) 667
Bsp143I GATC 3 cut(s) 388, 430, 752
Bsp1720I GCTNAGC 1 cut(s) 160
BspANI GGCC 3 cut(s) 8, 59, 155
BspCNI CTCAG 1 cut(s) 173
BspEI TCCGGA 1 cut(s) 667
BspFNI CGCG 5 cut(s) 135, 232, 252, 479, 726
BspPI GGATC 1 cut(s) 747
BssECI CCNNGG 2 cut(s) 250, 628
BssMI GATC 3 cut(s) 388, 430, 752
BssNAI GTATAC 1 cut(s) 465
BssNI GRCGYC 1 cut(s) 192
Bst1107I GTATAC 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 629
Bst4CI ACNGT 4 cut(s) 406, 471, 574, 795
Bst6I CTCTTC 1 cut(s) 451
BstACI GRCGYC 1 cut(s) 192
BstC8I GCNNGC 4 cut(s) 61, 112, 157, 842
BstDEI CTNAG 2 cut(s) 160, 336
BstDSI CCRYGG 1 cut(s) 250
BstF5I GGATG 2 cut(s) 583, 684
BstFNI CGCG 5 cut(s) 135, 232, 252, 479, 726
BstHHI GCGC 2 cut(s) 137, 726
BstKTI GATC 3 cut(s) 391, 433, 755
BstMAI GTCTC 3 cut(s) 229, 563, 669
BstMBI GATC 3 cut(s) 388, 430, 752
BstMCI CGRYCG 2 cut(s) 9, 250
BstMWI GCNNNNNNNGC 8 cut(s) 11, 17, 161, 198, 204, 249, 289, 376
BstNI CCWGG 1 cut(s) 629
BstSCI CCNGG 2 cut(s) 458, 627
BstUI CGCG 5 cut(s) 135, 232, 252, 479, 726
BstV1I GCAGC 2 cut(s) 23, 366
BstZ17I GTATAC 1 cut(s) 465
BstZI CGGCCG 1 cut(s) 6
BsuRI GGCC 3 cut(s) 8, 59, 155
BtgI CCRYGG 1 cut(s) 250
BtsCI GGATG 2 cut(s) 583, 684
BtsIMutI CAGTG 1 cut(s) 467
Cac8I GCNNGC 4 cut(s) 61, 112, 157, 842
CciNI GCGGCCGC 1 cut(s) 6
CfoI GCGC 2 cut(s) 137, 726
Cfr13I GGNCC 1 cut(s) 58
Cfr42I CCGCGG 1 cut(s) 253
CseI GACGC 3 cut(s) 134, 181, 238
CviAII CATG 1 cut(s) 798
DdeI CTNAG 2 cut(s) 160, 336
DpnI GATC 3 cut(s) 390, 432, 754
DpnII GATC 3 cut(s) 388, 430, 752
DraI TTTAAA 1 cut(s) 787
DrdI GACNNNNNNGTC 2 cut(s) 221, 235
DseDI GACNNNNNNGTC 2 cut(s) 221, 235
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 451
EarI CTCTTC 1 cut(s) 451
Ecl136II GAGCTC 1 cut(s) 422
EclXI CGGCCG 1 cut(s) 6
Eco24I GRGCYC 2 cut(s) 424, 635
Eco52I CGGCCG 1 cut(s) 6
Eco53kI GAGCTC 1 cut(s) 422
Eco57I CTGAAG 1 cut(s) 299
Eco88I CYCGRG 1 cut(s) 15
EcoICRI GAGCTC 1 cut(s) 422
EcoRI GAATTC 1 cut(s) 526
EcoRII CCWGG 1 cut(s) 627
EcoT38I GRGCYC 2 cut(s) 424, 635
Esp3I CGTCTC 2 cut(s) 229, 563
FaeI CATG 1 cut(s) 801
FaiI YATR 7 cut(s) 275, 368, 452, 465, 533, 543, 799
FalI AAGNNNNNCTT 2 cut(s) 227, 259
FatI CATG 1 cut(s) 797
FauI CCCGC 3 cut(s) 68, 101, 119
FblI GTMKAC 1 cut(s) 464
Fnu4HI GCNGC 8 cut(s) 6, 9, 12, 199, 202, 205, 293, 380
FokI GGATG 2 cut(s) 590, 671
FriOI GRGCYC 2 cut(s) 424, 635
Fsp4HI GCNGC 8 cut(s) 6, 9, 12, 199, 202, 205, 293, 380
GlaI GCGC 2 cut(s) 136, 725
GluI GCNGC 8 cut(s) 6, 9, 12, 199, 202, 205, 293, 380
HaeIII GGCC 3 cut(s) 8, 59, 155
HapII CCGG 4 cut(s) 189, 240, 459, 668
HgaI GACGC 3 cut(s) 134, 181, 238
HhaI GCGC 2 cut(s) 137, 726
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 1 cut(s) 801
Hin6I GCGC 2 cut(s) 135, 724
HinP1I GCGC 2 cut(s) 135, 724
HincII GTYRAC 1 cut(s) 708
HindII GTYRAC 1 cut(s) 708
HinfI GANTC 3 cut(s) 255, 341, 729
HpaI GTTAAC 1 cut(s) 708
HpaII CCGG 4 cut(s) 189, 240, 459, 668
HphI GGTGA 4 cut(s) 31, 394, 448, 593
Hpy166II GTNNAC 2 cut(s) 465, 708
Hpy188I TCNGA 7 cut(s) 176, 214, 388, 489, 568, 703, 807
Hpy188III TCNNGA 3 cut(s) 226, 668, 688
Hpy8I GTNNAC 2 cut(s) 465, 708
Hpy99I CGWCG 4 cut(s) 150, 197, 218, 232
HpyAV CCTTC 2 cut(s) 139, 758
HpyCH4III ACNGT 4 cut(s) 406, 471, 574, 795
HpyCH4V TGCA 3 cut(s) 417, 697, 840
HpyF10VI GCNNNNNNNGC 8 cut(s) 11, 17, 161, 198, 204, 249, 289, 376
HpyF3I CTNAG 2 cut(s) 160, 336
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 1 cut(s) 801
HspAI GCGC 2 cut(s) 135, 724
Kpn2I TCCGGA 1 cut(s) 667
KspAI GTTAAC 1 cut(s) 708
KspI CCGCGG 1 cut(s) 253
Kzo9I GATC 3 cut(s) 388, 430, 752
LmnI GCTCC 3 cut(s) 308, 427, 721
Lsp1109I GCAGC 2 cut(s) 23, 366
LweI GCATC 2 cut(s) 167, 811
MaeIII GTNAC 2 cut(s) 48, 400
MalI GATC 3 cut(s) 390, 432, 754
MboI GATC 3 cut(s) 388, 430, 752
MboII GAAGA 2 cut(s) 438, 562
MfeI CAATTG 1 cut(s) 767
MhlI GDGCHC 2 cut(s) 424, 635
MluCI AATT 8 cut(s) 116, 328, 505, 526, 679, 767, 846, 867
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 237
MroI TCCGGA 1 cut(s) 667
MseI TTAA 3 cut(s) 707, 717, 786
MspA1I CMGCKG 1 cut(s) 252
MspI CCGG 4 cut(s) 189, 240, 459, 668
MspR9I CCNGG 2 cut(s) 460, 629
MunI CAATTG 1 cut(s) 767
MvaI CCWGG 1 cut(s) 629
MvnI CGCG 5 cut(s) 135, 232, 252, 479, 726
MwoI GCNNNNNNNGC 8 cut(s) 11, 17, 161, 198, 204, 249, 289, 376
NciI CCSGG 1 cut(s) 460
NdeII GATC 3 cut(s) 388, 430, 752
NlaIII CATG 1 cut(s) 801
NmuCI GTSAC 2 cut(s) 48, 400
NotI GCGGCCGC 1 cut(s) 6
PfeI GAWTC 2 cut(s) 255, 729
PkrI GCNGC 8 cut(s) 7, 10, 13, 200, 203, 206, 294, 381
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
Psp124BI GAGCTC 1 cut(s) 424
Psp6I CCWGG 1 cut(s) 627
PspGI CCWGG 1 cut(s) 627
PspPI GGNCC 1 cut(s) 58
SacI GAGCTC 1 cut(s) 424
SacII CCGCGG 1 cut(s) 253
SaqAI TTAA 3 cut(s) 707, 717, 786
SatI GCNGC 8 cut(s) 6, 9, 12, 199, 202, 205, 293, 380
Sau3AI GATC 3 cut(s) 388, 430, 752
Sau96I GGNCC 1 cut(s) 58
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 2 cut(s) 460, 629
SduI GDGCHC 2 cut(s) 424, 635
SfaNI GCATC 2 cut(s) 167, 811
Sfr303I CCGCGG 1 cut(s) 253
SgrBI CCGCGG 1 cut(s) 253
SmlI CTYRAG 2 cut(s) 53, 645
SmoI CTYRAG 2 cut(s) 53, 645
Sse9I AATT 8 cut(s) 116, 328, 505, 526, 679, 767, 846, 867
SstI GAGCTC 1 cut(s) 424
StyD4I CCNGG 2 cut(s) 458, 627
TaaI ACNGT 4 cut(s) 406, 471, 574, 795
TaqI TCGA 5 cut(s) 227, 246, 344, 548, 751
TasI AATT 8 cut(s) 116, 328, 505, 526, 679, 767, 846, 867
TauI GCSGC 6 cut(s) 8, 11, 201, 204, 207, 295
TfiI GAWTC 2 cut(s) 255, 729
Tru1I TTAA 3 cut(s) 707, 717, 786
Tru9I TTAA 3 cut(s) 707, 717, 786
TscAI CASTG 1 cut(s) 474
TseFI GTSAC 2 cut(s) 48, 400
TseI GCWGC 2 cut(s) 11, 379
Tsp45I GTSAC 2 cut(s) 48, 400
TspDTI ATGAA 2 cut(s) 362, 860
TspGWI ACGGA 4 cut(s) 250, 295, 388, 536
TspRI CASTG 1 cut(s) 474
XapI RAATTY 2 cut(s) 505, 526
XmiI GTMKAC 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.