RchiOBHm_Chr4g0386121

Protein of unknown function (DUF760)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0003339
Physical Location & Seq
Forward (+)
1729680 .. 1731168
1489 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35951

Sequence Viewer

Length: 570 bp
ATGCTGAAGCGGATTGAGCCGCTTGACAGCTCCGTCATCTCCAAAGGCGTTTCGGATTCCGCTAAGGACTCGATGAAGCAGACCATCTCTACTATGCTGGGATTGCTGCCGTCCGATCAGTTCTCCGTCACCGTTAGGGTTTGCAGAGCTCCCCTTGATCGCTTCCTCGCCTCTTCCATAATCACCGGGTATACACTGTGGAACGCGGAGTATCGGATATCGTTGATGAGGAATTTTGACATTTCTACAGAGAATTCTGTGGCTTTGGATGGGTCGAAGATCGATGGGAGTTCGGAGACGGGGGATAGTGAGGAAAGGGATAGCGAGAATGGATTTGGGGCGAGTAATCAATACCTGGGCTCAACAAGTCCTCAAGTTTTCGGGGATTTGTCTCCGGAGGCTTTGAATTACATCCAGAGGTTGCAATCAGAGTTAACTAATGTTAAGGAGATTTCAAGAACTTCACGAGATTACCTAGCGAAGGTTCTTTTCTGGTGTATGTTATTAGGTCATCATTTGAGAGGCTTGGAGAACAGATTACATTTGAGTTGTGTTGTTGGATTGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF760

Protein Analysis

189

Amino Acids

20.93

Weight (kDa)

5.4

Isoelectric Point (pI)

44.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF760 PF05542 1 - 78 7.3e-21 Protein of unknown function (DUF760)
DUF760 PF05542 136 - 185 8.2e-11 Protein of unknown function (DUF760)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 32
AccI GTMKAC 1 cut(s) 191
AccII CGCG 1 cut(s) 206
AccIII TCCGGA 1 cut(s) 394
AciI CCGC 4 cut(s) 10, 20, 60, 206
AcsI RAATTY 2 cut(s) 232, 253
AcuI CTGAAG 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 481
AgsI TTSAA 2 cut(s) 406, 456
AjnI CCWGG 1 cut(s) 354
AluBI AGCT 2 cut(s) 30, 149
AluI AGCT 2 cut(s) 30, 149
Alw21I GWGCWC 1 cut(s) 151
Alw26I GTCTC 2 cut(s) 290, 396
Aor13HI TCCGGA 1 cut(s) 394
ApeKI GCWGC 1 cut(s) 106
ApoI RAATTY 2 cut(s) 232, 253
AsuC2I CCSGG 1 cut(s) 187
AsuHPI GGTGA 2 cut(s) 121, 175
BanII GRGCYC 2 cut(s) 151, 362
BauI CACGAG 1 cut(s) 465
Bbv12I GWGCWC 1 cut(s) 151
BbvI GCAGC 1 cut(s) 93
BccI CCATC 3 cut(s) 92, 263, 278
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 1 cut(s) 356
BcnI CCSGG 1 cut(s) 187
BcoDI GTCTC 2 cut(s) 290, 396
BfaI CTAG 1 cut(s) 476
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 2 cut(s) 20, 107
BlsI GCNGC 2 cut(s) 21, 108
Bme1390I CCNGG 2 cut(s) 187, 356
BmrFI CCNGG 2 cut(s) 187, 356
Bpu10I CCTNAGC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 357
BpuMI CCSGG 1 cut(s) 187
Bsa29I ATCGAT 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 355
BsaWI WCCGGW 1 cut(s) 394
Bsc4I CCNNNNNNNGG 1 cut(s) 481
BseAI TCCGGA 1 cut(s) 394
BseBI CCWGG 1 cut(s) 356
BseCI ATCGAT 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 355
BseGI GGATG 2 cut(s) 274, 411
BseLI CCNNNNNNNGG 1 cut(s) 481
BseXI GCAGC 1 cut(s) 93
BseYI CCCAGC 1 cut(s) 97
Bsh1236I CGCG 1 cut(s) 206
BshVI ATCGAT 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 151
BsiSI CCGG 2 cut(s) 186, 395
BslI CCNNNNNNNGG 1 cut(s) 481
BsmAI GTCTC 2 cut(s) 290, 396
BsmBI CGTCTC 1 cut(s) 290
Bsp1286I GDGCHC 2 cut(s) 151, 362
Bsp13I TCCGGA 1 cut(s) 394
Bsp143I GATC 3 cut(s) 115, 157, 279
BspACI CCGC 4 cut(s) 10, 20, 60, 206
BspDI ATCGAT 1 cut(s) 282
BspEI TCCGGA 1 cut(s) 394
BspFNI CGCG 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 355
BssMI GATC 3 cut(s) 115, 157, 279
BssNAI GTATAC 1 cut(s) 192
BssSI CACGAG 1 cut(s) 465
Bst1107I GTATAC 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 465
Bst2UI CCWGG 1 cut(s) 356
Bst4CI ACNGT 2 cut(s) 133, 198
Bst6I CTCTTC 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 63
BstENI CCTNNNNNAGG 1 cut(s) 479
BstF5I GGATG 2 cut(s) 274, 411
BstFNI CGCG 1 cut(s) 206
BstKTI GATC 3 cut(s) 118, 160, 282
BstMAI GTCTC 2 cut(s) 290, 396
BstMBI GATC 3 cut(s) 115, 157, 279
BstMWI GCNNNNNNNGC 2 cut(s) 16, 103
BstNI CCWGG 1 cut(s) 356
BstSCI CCNGG 2 cut(s) 185, 354
BstSFI CTRYAG 1 cut(s) 246
BstUI CGCG 1 cut(s) 206
BstV1I GCAGC 1 cut(s) 93
BstZ17I GTATAC 1 cut(s) 192
Bsu15I ATCGAT 1 cut(s) 282
BsuTUI ATCGAT 1 cut(s) 282
BtsCI GGATG 2 cut(s) 274, 411
BtsIMutI CAGTG 1 cut(s) 194
ClaI ATCGAT 1 cut(s) 282
CviJI RGCY 7 cut(s) 19, 30, 149, 263, 360, 401, 525
CviKI_1 RGCY 7 cut(s) 19, 30, 149, 263, 360, 401, 525
DdeI CTNAG 1 cut(s) 63
DpnI GATC 3 cut(s) 117, 159, 281
DpnII GATC 3 cut(s) 115, 157, 279
DrdI GACNNNNNNGTC 1 cut(s) 32
DseDI GACNNNNNNGTC 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
Ecl136II GAGCTC 1 cut(s) 149
Eco24I GRGCYC 2 cut(s) 151, 362
Eco32I GATATC 1 cut(s) 219
Eco53kI GAGCTC 1 cut(s) 149
Eco57I CTGAAG 1 cut(s) 26
EcoICRI GAGCTC 1 cut(s) 149
EcoNI CCTNNNNNAGG 1 cut(s) 479
EcoRI GAATTC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 354
EcoRV GATATC 1 cut(s) 219
EcoT38I GRGCYC 2 cut(s) 151, 362
Esp3I CGTCTC 1 cut(s) 290
FaiI YATR 4 cut(s) 95, 179, 192, 500
FblI GTMKAC 1 cut(s) 191
Fnu4HI GCNGC 2 cut(s) 20, 107
FokI GGATG 2 cut(s) 281, 398
FriOI GRGCYC 2 cut(s) 151, 362
Fsp4HI GCNGC 2 cut(s) 20, 107
FspBI CTAG 1 cut(s) 476
GluI GCNGC 2 cut(s) 20, 107
GsaI CCCAGC 1 cut(s) 101
HapII CCGG 2 cut(s) 186, 395
HincII GTYRAC 1 cut(s) 435
HindII GTYRAC 1 cut(s) 435
HinfI GANTC 2 cut(s) 56, 68
HpaI GTTAAC 1 cut(s) 435
HpaII CCGG 2 cut(s) 186, 395
HphI GGTGA 2 cut(s) 121, 175
Hpy166II GTNNAC 2 cut(s) 192, 435
Hpy188I TCNGA 5 cut(s) 55, 115, 216, 295, 430
Hpy188III TCNNGA 4 cut(s) 395, 415, 456, 465
Hpy8I GTNNAC 2 cut(s) 192, 435
HpyAV CCTTC 1 cut(s) 475
HpyCH4III ACNGT 2 cut(s) 133, 198
HpyCH4V TGCA 2 cut(s) 144, 424
HpyF10VI GCNNNNNNNGC 2 cut(s) 16, 103
HpyF3I CTNAG 1 cut(s) 63
Kpn2I TCCGGA 1 cut(s) 394
KspAI GTTAAC 1 cut(s) 435
Kzo9I GATC 3 cut(s) 115, 157, 279
LmnI GCTCC 2 cut(s) 35, 154
LpnPI CCDG 7 cut(s) 83, 199, 341, 368, 408, 428, 478
Lsp1109I GCAGC 1 cut(s) 93
MaeI CTAG 1 cut(s) 476
MaeIII GTNAC 1 cut(s) 127
MalI GATC 3 cut(s) 117, 159, 281
MboI GATC 3 cut(s) 115, 157, 279
MboII GAAGA 2 cut(s) 165, 289
MhlI GDGCHC 2 cut(s) 151, 362
MluCI AATT 3 cut(s) 232, 253, 406
MlyI GAGTC 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 538
MnlI CCTC 8 cut(s) 176, 181, 222, 304, 381, 391, 411, 515
MroI TCCGGA 1 cut(s) 394
MseI TTAA 2 cut(s) 434, 444
MspI CCGG 2 cut(s) 186, 395
MspR9I CCNGG 2 cut(s) 187, 356
MvaI CCWGG 1 cut(s) 356
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 16, 103
NciI CCSGG 1 cut(s) 187
NdeII GATC 3 cut(s) 115, 157, 279
NmuCI GTSAC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 2 cut(s) 21, 108
PleI GAGTC 1 cut(s) 62
PpsI GAGTC 1 cut(s) 62
Psp124BI GAGCTC 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 354
PspFI CCCAGC 1 cut(s) 97
PspGI CCWGG 1 cut(s) 354
SacI GAGCTC 1 cut(s) 151
SaqAI TTAA 2 cut(s) 434, 444
SatI GCNGC 2 cut(s) 20, 107
Sau3AI GATC 3 cut(s) 115, 157, 279
SchI GAGTC 1 cut(s) 62
ScrFI CCNGG 2 cut(s) 187, 356
SduI GDGCHC 2 cut(s) 151, 362
SetI ASST 7 cut(s) 32, 151, 357, 422, 477, 486, 511
SfcI CTRYAG 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 372
SmoI CTYRAG 1 cut(s) 372
Sse9I AATT 3 cut(s) 232, 253, 406
SsiI CCGC 4 cut(s) 10, 20, 60, 206
SspMI CTAG 1 cut(s) 476
SstI GAGCTC 1 cut(s) 151
StyD4I CCNGG 2 cut(s) 185, 354
TaaI ACNGT 2 cut(s) 133, 198
TaqI TCGA 3 cut(s) 71, 275, 282
TasI AATT 3 cut(s) 232, 253, 406
TauI GCSGC 1 cut(s) 22
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 2 cut(s) 434, 444
Tru9I TTAA 2 cut(s) 434, 444
TscAI CASTG 1 cut(s) 201
TseFI GTSAC 1 cut(s) 127
TseI GCWGC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 127
TspDTI ATGAA 1 cut(s) 89
TspGWI ACGGA 2 cut(s) 22, 115
TspRI CASTG 1 cut(s) 201
XagI CCTNNNNNAGG 1 cut(s) 479
XapI RAATTY 2 cut(s) 232, 253
XmiI GTMKAC 1 cut(s) 191
XspI CTAG 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.