Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003339

Physical Location & Seq

Genomic Coordinates Reverse (-)

26038972 .. 26042061

Gene Structure 3090 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG265700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGCTGAAGCGGATTGAGCCGCTTGACAGCTCCGTTATCTCCAAAGGCGTTTCCGTTTCCGCTAAGGACTCGATGAAGCAGACCATCTCTACTATGCTTGGATTGCTGCCGTCCAATCAGTTCTCCGTCACCGTTAGGGTTTGCAGAGCTCCCCTTGATCGCCTCCTCGCCTCTTCCATAATCACCGGGTATACACTGTGGAACGCGGAGTATCGGATATCGTTGATAAGGAATTTTGACATTTCTACGGAGAATTCTGTGGCTTTGTATGGGTCGAAGATAGATGGGAGTTCGGAGACCGTGGATGGTGAGGAAAGGGGTAGCGAGAATGGATTTGGGGCGAGTAATCAATACCTGGGCTCAACAACTCCTCAAGTTTTCGGGGATTTGTCTCCGGAGGCTTTGAATTACATCCAGAGGTTCCAATCGGAGTTAACTAATGTTAAGGAGGAGGCAGATGGCACCACAGAAGAAACCAAAAAGAGCAGCAATCTCCTGAGGAAGCTTGAGAAGCGCCAGAAAGATCTTACTCTTGATTCCCACATCGAAGAGCAGTTTAGTGGTGGTAGGTTGTTGGCTTGCATTTCTTCCCGCCCAGGCCAATGTGGAAGATCTGATGGGTACATTTTGGAGGGGAAAGAATTAGAGTTTTACATGAAGAAACTCCAGAGGAAGAAGGGAAAGGCAGCTGGTGCTGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

234

Amino Acids

25.69

Weight (kDa)

7.63

Isoelectric Point (pI)

47.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	1 - 78	7e-21	Protein of unknown function (DUF760)
Ribosomal_S8e	PF01201	176 - 210	9.4e-08	Ribosomal protein S8e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14970
fragaria_vesca	FvH4_6g49830 FvH4_6g49830 FvH4_6g49830 FvH4_6g49830
malus_domestica	MD09G1041100.v1.1 MD17G1042400.v1.1
prunus_persica	Prupe.3G276600_v2.0.a1 Prupe.3G276600_v2.0.a1
pyrus_communis	pycom17g03800
rosa_chinensis	RchiOBHm_Chr2g0169981 RchiOBHm_Chr4g0386121 RchiOBHm_Chr4g0386261 RchiOBHm_Chr4g0386271
rosa_laevigata	RLG00000021916
rosa_multiflora	Rmu_sc0002862.1_g000014 Rmu_sc0003415.1_g000008 Rmu_sc0013078.1_g000018 Rmu_ssc0000389.1_g000006
rosa_roxburghii	Rroxscaffold_2G00081690 Rroxscaffold_5G00333850
rosa_rugosa	Rorug02G0544900
rosa_samantha	Rh2AG616900 Rh2CG598000 Rh2DG639900 Rh3CG265700 Rh4AG010800 Rh4BG007900 Rh4DG118700 Rh5DG240500 Rh7DG285000 Rh7DG341500
rosa_wichuraiana	Rw2G029160 Rw2G034420 Rw2G051100 Rw3G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	461
AccI	GTMKAC	1 cut(s)	191
AccII	CGCG	1 cut(s)	206
AccIII	TCCGGA	1 cut(s)	394
AciI	CCGC	5 cut(s)	10, 20, 60, 206, 592
AcsI	RAATTY	2 cut(s)	232, 253
AcuI	CTGAAG	1 cut(s)	26
AfaI	GTAC	1 cut(s)	623
AgsI	TTSAA	1 cut(s)	406
AjnI	CCWGG	2 cut(s)	354, 595
AluBI	AGCT	4 cut(s)	30, 149, 505, 689
AluI	AGCT	4 cut(s)	30, 149, 505, 689
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	2 cut(s)	290, 396
Aor13HI	TCCGGA	1 cut(s)	394
AoxI	GGCC	1 cut(s)	598
ApeKI	GCWGC	5 cut(s)	106, 486, 686, 695, 698
ApoI	RAATTY	2 cut(s)	232, 253
AspLEI	GCGC	1 cut(s)	516
AsuC2I	CCSGG	1 cut(s)	187
AsuHPI	GGTGA	3 cut(s)	121, 175, 320
AxyI	CCTNAGG	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	461
BanII	GRGCYC	2 cut(s)	151, 362
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	5 cut(s)	93, 498, 682, 685, 698
BccI	CCATC	5 cut(s)	92, 278, 299, 452, 611
BceAI	ACGGC	1 cut(s)	94
BciT130I	CCWGG	2 cut(s)	356, 597
BcnI	CCSGG	1 cut(s)	187
BcoDI	GTCTC	2 cut(s)	290, 396
BfoI	RGCGCY	1 cut(s)	517
BglII	AGATCT	2 cut(s)	523, 611
BisI	GCNGC	6 cut(s)	20, 107, 487, 687, 696, 699
BlsI	GCNGC	6 cut(s)	21, 108, 488, 688, 697, 700
Bme1390I	CCNGG	3 cut(s)	187, 356, 597
BmiI	GGNNCC	2 cut(s)	422, 463
BmrFI	CCNGG	3 cut(s)	187, 356, 597
BpmI	CTGGAG	1 cut(s)	650
Bpu10I	CCTNAGC	1 cut(s)	63
BpuEI	CTTGAG	2 cut(s)	357, 527
BpuMI	CCSGG	1 cut(s)	187
BsaI	GGTCTC	1 cut(s)	290
BsaJI	CCNNGG	3 cut(s)	300, 355, 595
BsaWI	WCCGGW	1 cut(s)	394
Bse21I	CCTNAGG	1 cut(s)	497
BseAI	TCCGGA	1 cut(s)	394
BseBI	CCWGG	2 cut(s)	356, 597
BseDI	CCNNGG	3 cut(s)	300, 355, 595
BseGI	GGATG	2 cut(s)	310, 411
BseMII	CTCAG	1 cut(s)	488
BseRI	GAGGAG	3 cut(s)	155, 360, 464
BseXI	GCAGC	5 cut(s)	93, 498, 682, 685, 698
Bsh1236I	CGCG	1 cut(s)	206
BshFI	GGCC	1 cut(s)	600
BshNI	GGYRCC	1 cut(s)	461
BsiHKAI	GWGCWC	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	186, 395
BsmAI	GTCTC	2 cut(s)	290, 396
BsnI	GGCC	1 cut(s)	600
Bso31I	GGTCTC	1 cut(s)	290
Bsp1286I	GDGCHC	2 cut(s)	151, 362
Bsp13I	TCCGGA	1 cut(s)	394
Bsp143I	GATC	3 cut(s)	157, 523, 611
BspACI	CCGC	5 cut(s)	10, 20, 60, 206, 592
BspANI	GGCC	1 cut(s)	600
BspCNI	CTCAG	1 cut(s)	489
BspEI	TCCGGA	1 cut(s)	394
BspFNI	CGCG	1 cut(s)	206
BspLI	GGNNCC	2 cut(s)	422, 463
BspQI	GCTCTTC	1 cut(s)	543
BspT107I	GGYRCC	1 cut(s)	461
BspTNI	GGTCTC	1 cut(s)	290
BssECI	CCNNGG	3 cut(s)	300, 355, 595
BssMI	GATC	3 cut(s)	157, 523, 611
BssNAI	GTATAC	1 cut(s)	192
Bst1107I	GTATAC	1 cut(s)	192
Bst2UI	CCWGG	2 cut(s)	356, 597
Bst4CI	ACNGT	3 cut(s)	133, 198, 301
Bst6I	CTCTTC	2 cut(s)	178, 543
BstAPI	GCANNNNNTGC	1 cut(s)	692
BstC8I	GCNNGC	1 cut(s)	580
BstDEI	CTNAG	2 cut(s)	63, 497
BstDSI	CCRYGG	1 cut(s)	300
BstF5I	GGATG	2 cut(s)	310, 411
BstFNI	CGCG	1 cut(s)	206
BstH2I	RGCGCY	1 cut(s)	517
BstHHI	GCGC	1 cut(s)	516
BstKTI	GATC	3 cut(s)	160, 526, 614
BstMAI	GTCTC	2 cut(s)	290, 396
BstMBI	GATC	3 cut(s)	157, 523, 611
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 103, 511, 692, 695
BstNI	CCWGG	2 cut(s)	356, 597
BstSCI	CCNGG	3 cut(s)	185, 354, 595
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	5 cut(s)	93, 498, 682, 685, 698
BstX2I	RGATCY	2 cut(s)	523, 611
BstYI	RGATCY	2 cut(s)	523, 611
BstZ17I	GTATAC	1 cut(s)	192
Bsu36I	CCTNAGG	1 cut(s)	497
BsuRI	GGCC	1 cut(s)	600
BtgI	CCRYGG	1 cut(s)	300
BtsCI	GGATG	2 cut(s)	310, 411
BtsIMutI	CAGTG	1 cut(s)	194
Cac8I	GCNNGC	1 cut(s)	580
CfoI	GCGC	1 cut(s)	516
Csp6I	GTAC	1 cut(s)	622
CviAII	CATG	1 cut(s)	655
CviQI	GTAC	1 cut(s)	622
DdeI	CTNAG	2 cut(s)	63, 497
DpnI	GATC	3 cut(s)	159, 525, 613
DpnII	GATC	3 cut(s)	157, 523, 611
Eam1104I	CTCTTC	2 cut(s)	178, 543
EarI	CTCTTC	2 cut(s)	178, 543
Ecl136II	GAGCTC	1 cut(s)	149
Eco24I	GRGCYC	2 cut(s)	151, 362
Eco31I	GGTCTC	1 cut(s)	290
Eco32I	GATATC	1 cut(s)	219
Eco53kI	GAGCTC	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	26
Eco81I	CCTNAGG	1 cut(s)	497
EcoICRI	GAGCTC	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	253
EcoRII	CCWGG	2 cut(s)	354, 595
EcoRV	GATATC	1 cut(s)	219
EcoT38I	GRGCYC	2 cut(s)	151, 362
FaeI	CATG	1 cut(s)	658
FaiI	YATR	6 cut(s)	95, 179, 192, 270, 656, 703
FatI	CATG	1 cut(s)	654
FauI	CCCGC	1 cut(s)	599
FblI	GTMKAC	1 cut(s)	191
Fnu4HI	GCNGC	6 cut(s)	20, 107, 487, 687, 696, 699
FokI	GGATG	2 cut(s)	317, 398
FriOI	GRGCYC	2 cut(s)	151, 362
Fsp4HI	GCNGC	6 cut(s)	20, 107, 487, 687, 696, 699
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	6 cut(s)	20, 107, 487, 687, 696, 699
GsuI	CTGGAG	1 cut(s)	650
HaeII	RGCGCY	1 cut(s)	517
HaeIII	GGCC	1 cut(s)	600
HapII	CCGG	2 cut(s)	186, 395
HhaI	GCGC	1 cut(s)	516
Hin1II	CATG	1 cut(s)	658
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HindIII	AAGCTT	1 cut(s)	503
HinfI	GANTC	2 cut(s)	68, 536
HpaI	GTTAAC	1 cut(s)	435
HpaII	CCGG	2 cut(s)	186, 395
HphI	GGTGA	3 cut(s)	121, 175, 320
Hpy166II	GTNNAC	2 cut(s)	192, 435
Hpy188I	TCNGA	4 cut(s)	216, 295, 430, 616
Hpy188III	TCNNGA	5 cut(s)	395, 415, 496, 533, 667
Hpy8I	GTNNAC	2 cut(s)	192, 435
HpyAV	CCTTC	1 cut(s)	670
HpyCH4III	ACNGT	3 cut(s)	133, 198, 301
HpyCH4V	TGCA	3 cut(s)	144, 582, 701
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 103, 511, 692, 695
HpyF3I	CTNAG	2 cut(s)	63, 497
Hsp92II	CATG	1 cut(s)	658
HspAI	GCGC	1 cut(s)	514
Kpn2I	TCCGGA	1 cut(s)	394
KspAI	GTTAAC	1 cut(s)	435
Kzo9I	GATC	3 cut(s)	157, 523, 611
LguI	GCTCTTC	1 cut(s)	543
LmnI	GCTCC	2 cut(s)	35, 154
Lsp1109I	GCAGC	5 cut(s)	93, 498, 682, 685, 698
MaeIII	GTNAC	1 cut(s)	127
MalI	GATC	3 cut(s)	159, 525, 613
MboI	GATC	3 cut(s)	157, 523, 611
MboII	GAAGA	8 cut(s)	165, 289, 482, 560, 579, 621, 670, 685
MflI	RGATCY	2 cut(s)	523, 611
MhlI	GDGCHC	2 cut(s)	151, 362
MluCI	AATT	4 cut(s)	232, 253, 406, 641
MlyI	GAGTC	1 cut(s)	62
MroI	TCCGGA	1 cut(s)	394
MseI	TTAA	2 cut(s)	434, 444
MspA1I	CMGCKG	1 cut(s)	689
MspI	CCGG	2 cut(s)	186, 395
MspR9I	CCNGG	3 cut(s)	187, 356, 597
MvaI	CCWGG	2 cut(s)	356, 597
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	5 cut(s)	16, 103, 511, 692, 695
NciI	CCSGG	1 cut(s)	187
NdeII	GATC	3 cut(s)	157, 523, 611
NlaIII	CATG	1 cut(s)	658
NlaIV	GGNNCC	2 cut(s)	422, 463
NmuCI	GTSAC	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	543
PfeI	GAWTC	1 cut(s)	536
PkrI	GCNGC	6 cut(s)	21, 108, 488, 688, 697, 700
PleI	GAGTC	1 cut(s)	62
PpsI	GAGTC	1 cut(s)	62
Psp124BI	GAGCTC	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	354, 595
PspGI	CCWGG	2 cut(s)	354, 595
PspN4I	GGNNCC	2 cut(s)	422, 463
PsuI	RGATCY	2 cut(s)	523, 611
PvuII	CAGCTG	1 cut(s)	689
RsaI	GTAC	1 cut(s)	623
RsaNI	GTAC	1 cut(s)	622
SacI	GAGCTC	1 cut(s)	151
SapI	GCTCTTC	1 cut(s)	543
SaqAI	TTAA	2 cut(s)	434, 444
SatI	GCNGC	6 cut(s)	20, 107, 487, 687, 696, 699
Sau3AI	GATC	3 cut(s)	157, 523, 611
SchI	GAGTC	1 cut(s)	62
ScrFI	CCNGG	3 cut(s)	187, 356, 597
SduI	GDGCHC	2 cut(s)	151, 362
SetI	ASST	7 cut(s)	32, 151, 357, 422, 507, 572, 691
SmlI	CTYRAG	2 cut(s)	372, 506
SmoI	CTYRAG	2 cut(s)	372, 506
Sse9I	AATT	4 cut(s)	232, 253, 406, 641
SsiI	CCGC	5 cut(s)	10, 20, 60, 206, 592
SstI	GAGCTC	1 cut(s)	151
StyD4I	CCNGG	3 cut(s)	185, 354, 595
TaaI	ACNGT	3 cut(s)	133, 198, 301
TaqI	TCGA	3 cut(s)	71, 275, 546
TasI	AATT	4 cut(s)	232, 253, 406, 641
TauI	GCSGC	1 cut(s)	22
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	2 cut(s)	434, 444
Tru9I	TTAA	2 cut(s)	434, 444
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	127
TseI	GCWGC	5 cut(s)	106, 486, 686, 695, 698
Tsp45I	GTSAC	1 cut(s)	127
TspDTI	ATGAA	2 cut(s)	89, 671
TspGWI	ACGGA	4 cut(s)	22, 43, 115, 263
TspRI	CASTG	1 cut(s)	201
XapI	RAATTY	2 cut(s)	232, 253
XmiI	GTMKAC	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.