Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0003339

Physical Location & Seq

Genomic Coordinates Reverse (-)

79278307 .. 79280744

Gene Structure 2438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021916

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGCGGCCGCAGCTCGGGCTTTCACTCTCTCTCGCCTCACCGACCTGTCAGTCAAGCCCCGCCACCCACAACCACCACCGCCTCCCGTTTCCCGCCCCCACCTCCTCGCCCGCCCGTTACTCCCCTCCTTCCGCGTCCAACGGCGTCGTTTGGCGTGCTCGGCTTCCACCATCCGATGCCTCATCTCCGGTGTCGACGGCGGCGGCGTGTCCGACGAGTTCGTCTCGACTCGGAAGTCCGGCTTCGACCGCGGATTCTCTGTTATCGCCAATATGCTGAAGCGGATTGAGCCGCTTGACAGCTCCGTTATCTCCAAAGGCGTTTCCGATTCCGCTAAGGACTCGATGAAGCAGACCATCTCTACTATGCTGGGATTGCTGCCGTCTGATCAGTTCTCCGTCACCGTTAGGGTTGGCAGAGCACCCCTTGATCGCCTCCTCGCCTCTTCCATAATCACCGGGTATACACTGTGGAACGCGGAGTATCGGATATCGTTGATGAGGAATTTTGACATTTCTACGGAGAATTCTGTGGCTTTGGATGGGAGTTCGGAGACAGTGGATGGTGAGGAAAGGGATAGCGAGAATGGATTTGGGGCGAGTAATCAATACCTGGGCTCAACAACTCCTCAAGTTTTCGGGGATTTGTCTCCGGAGGCTTTGAATTACATCCAGAGGTTGCAATCAGAGTTAACTAATGTTAAGGAGGAACTGAAAGCTCAAAAGCAGGAAAATATGCAATTAGAATATGACACAGGACACAGAAATGATTTGTTGGATTATCTCCGGTCATTGGATTCTAGTATGGTGACTGAGCTATCTCGGCCCTCATCATTAGAGGTGGAGGAGATTATACACCAACTTGTTCAAAATATATTGCAGAGATTCTTCAAAGATGGAGAATCCTCAGAATTCGAGGAAGATTTAGTTAAAGCGAATATAGAGAATGTTCTAGATTCTGATGGCGAACTTTGTGATACTGTAGGAACTTCACGAGATTACCTAGCGAAGCTTCTTTTCTGGTGTATGTTATTAGGTCATCATTTGAGAGGCTTGGAGAACAGATTACATTTGAGTTGTGTTGTTGGATTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

366

Amino Acids

40.51

Weight (kDa)

5.31

Isoelectric Point (pI)

52.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF760	PF05542	91 - 169	7.6e-22	Protein of unknown function (DUF760)
DUF760	PF05542	257 - 361	2.4e-22	Protein of unknown function (DUF760)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14970
fragaria_vesca	FvH4_6g49830 FvH4_6g49830 FvH4_6g49830 FvH4_6g49830
malus_domestica	MD09G1041100.v1.1 MD17G1042400.v1.1
prunus_persica	Prupe.3G276600_v2.0.a1 Prupe.3G276600_v2.0.a1
pyrus_communis	pycom17g03800
rosa_chinensis	RchiOBHm_Chr2g0169981 RchiOBHm_Chr4g0386121 RchiOBHm_Chr4g0386261 RchiOBHm_Chr4g0386271
rosa_laevigata	RLG00000021916
rosa_multiflora	Rmu_sc0002862.1_g000014 Rmu_sc0003415.1_g000008 Rmu_sc0013078.1_g000018 Rmu_ssc0000389.1_g000006
rosa_roxburghii	Rroxscaffold_2G00081690 Rroxscaffold_5G00333850
rosa_rugosa	Rorug02G0544900
rosa_samantha	Rh2AG616900 Rh2CG598000 Rh2DG639900 Rh3CG265700 Rh4AG010800 Rh4BG007900 Rh4DG118700 Rh5DG240500 Rh7DG285000 Rh7DG341500
rosa_wichuraiana	Rw2G029160 Rw2G034420 Rw2G051100 Rw3G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	50, 221, 235
AccI	GTMKAC	2 cut(s)	195, 464
AccII	CGCG	3 cut(s)	135, 252, 479
AccIII	TCCGGA	1 cut(s)	652
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	3 cut(s)	505, 526, 911
AcuI	CTGAAG	1 cut(s)	299
AcyI	GRCGYC	1 cut(s)	145
AfiI	CCNNNNNNNGG	2 cut(s)	15, 793
AgsI	TTSAA	3 cut(s)	664, 869, 892
AjnI	CCWGG	1 cut(s)	612
AluBI	AGCT	5 cut(s)	14, 303, 719, 817, 1012
AluI	AGCT	5 cut(s)	14, 303, 719, 817, 1012
Alw21I	GWGCWC	2 cut(s)	161, 424
Alw26I	GTCTC	3 cut(s)	229, 548, 654
Ama87I	CYCGRG	1 cut(s)	15
Aor13HI	TCCGGA	1 cut(s)	652
AoxI	GGCC	2 cut(s)	6, 824
ApeKI	GCWGC	2 cut(s)	11, 379
ApoI	RAATTY	3 cut(s)	505, 526, 911
AspS9I	GGNCC	1 cut(s)	825
AsuC2I	CCSGG	1 cut(s)	460
AsuHPI	GGTGA	5 cut(s)	31, 394, 448, 578, 820
AvaI	CYCGRG	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	620
BauI	CACGAG	1 cut(s)	993
Bbv12I	GWGCWC	2 cut(s)	161, 424
BbvI	GCAGC	2 cut(s)	23, 366
BccI	CCATC	6 cut(s)	179, 365, 536, 557, 890, 956
BceAI	ACGGC	3 cut(s)	158, 214, 367
BciT130I	CCWGG	1 cut(s)	614
BclI	TGATCA	1 cut(s)	388
BcnI	CCSGG	1 cut(s)	460
BcoDI	GTCTC	3 cut(s)	229, 548, 654
BfaI	CTAG	3 cut(s)	801, 953, 1004
BfmI	CTRYAG	1 cut(s)	981
BisI	GCNGC	7 cut(s)	6, 9, 12, 202, 205, 293, 380
BlsI	GCNGC	7 cut(s)	7, 10, 13, 203, 206, 294, 381
Bme1390I	CCNGG	2 cut(s)	460, 614
BmeT110I	CYCGRG	1 cut(s)	15
BmgT120I	GGNCC	1 cut(s)	825
BmrFI	CCNGG	2 cut(s)	460, 614
BmsI	GCATC	1 cut(s)	167
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
Bpu10I	CCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	615
BpuMI	CCSGG	1 cut(s)	460
BsaHI	GRCGYC	1 cut(s)	145
BsaJI	CCNNGG	2 cut(s)	250, 613
BsaWI	WCCGGW	3 cut(s)	188, 652, 786
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 793
BseAI	TCCGGA	1 cut(s)	652
BseBI	CCWGG	1 cut(s)	614
BseDI	CCNNGG	2 cut(s)	250, 613
BseGI	GGATG	4 cut(s)	171, 547, 568, 669
BseLI	CCNNNNNNNGG	2 cut(s)	15, 793
BseMII	CTCAG	2 cut(s)	804, 921
BseRI	GAGGAG	4 cut(s)	95, 428, 618, 860
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	2 cut(s)	23, 366
BseYI	CCCAGC	1 cut(s)	370
Bsh1236I	CGCG	3 cut(s)	135, 252, 479
Bsh1285I	CGRYCG	2 cut(s)	9, 250
BshFI	GGCC	2 cut(s)	8, 826
BsiEI	CGRYCG	2 cut(s)	9, 250
BsiHKAI	GWGCWC	2 cut(s)	161, 424
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	5 cut(s)	189, 240, 459, 653, 787
BslI	CCNNNNNNNGG	2 cut(s)	15, 793
BsmAI	GTCTC	3 cut(s)	229, 548, 654
BsmBI	CGTCTC	1 cut(s)	229
BsnI	GGCC	2 cut(s)	8, 826
BsoBI	CYCGRG	1 cut(s)	15
Bsp1286I	GDGCHC	3 cut(s)	161, 424, 620
Bsp13I	TCCGGA	1 cut(s)	652
Bsp143I	GATC	2 cut(s)	388, 430
BspANI	GGCC	2 cut(s)	8, 826
BspCNI	CTCAG	2 cut(s)	805, 920
BspEI	TCCGGA	1 cut(s)	652
BspFNI	CGCG	3 cut(s)	135, 252, 479
BssECI	CCNNGG	2 cut(s)	250, 613
BssMI	GATC	2 cut(s)	388, 430
BssNAI	GTATAC	1 cut(s)	465
BssNI	GRCGYC	1 cut(s)	145
BssSI	CACGAG	1 cut(s)	993
Bst1107I	GTATAC	1 cut(s)	465
Bst2BI	CACGAG	1 cut(s)	993
Bst2UI	CCWGG	1 cut(s)	614
Bst4CI	ACNGT	4 cut(s)	406, 471, 559, 982
Bst6I	CTCTTC	1 cut(s)	451
BstACI	GRCGYC	1 cut(s)	145
BstC8I	GCNNGC	2 cut(s)	112, 157
BstDEI	CTNAG	3 cut(s)	336, 813, 907
BstDSI	CCRYGG	1 cut(s)	250
BstF5I	GGATG	4 cut(s)	171, 547, 568, 669
BstFNI	CGCG	3 cut(s)	135, 252, 479
BstKTI	GATC	2 cut(s)	391, 433
BstMAI	GTCTC	3 cut(s)	229, 548, 654
BstMBI	GATC	2 cut(s)	388, 430
BstMCI	CGRYCG	2 cut(s)	9, 250
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 17, 161, 249, 289, 376, 823
BstNI	CCWGG	1 cut(s)	614
BstSCI	CCNGG	2 cut(s)	458, 612
BstSFI	CTRYAG	1 cut(s)	981
BstUI	CGCG	3 cut(s)	135, 252, 479
BstV1I	GCAGC	2 cut(s)	23, 366
BstZ17I	GTATAC	1 cut(s)	465
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	8, 826
BtgI	CCRYGG	1 cut(s)	250
BtsCI	GGATG	4 cut(s)	171, 547, 568, 669
BtsIMutI	CAGTG	2 cut(s)	467, 564
Cac8I	GCNNGC	2 cut(s)	112, 157
CciNI	GCGGCCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	825
Cfr42I	CCGCGG	1 cut(s)	253
CseI	GACGC	2 cut(s)	124, 134
DdeI	CTNAG	3 cut(s)	336, 813, 907
DpnI	GATC	2 cut(s)	390, 432
DpnII	GATC	2 cut(s)	388, 430
DrdI	GACNNNNNNGTC	3 cut(s)	50, 221, 235
DseDI	GACNNNNNNGTC	3 cut(s)	50, 221, 235
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	451
EarI	CTCTTC	1 cut(s)	451
EclXI	CGGCCG	1 cut(s)	6
Eco24I	GRGCYC	1 cut(s)	620
Eco32I	GATATC	1 cut(s)	492
Eco52I	CGGCCG	1 cut(s)	6
Eco57I	CTGAAG	1 cut(s)	299
Eco88I	CYCGRG	1 cut(s)	15
EcoRI	GAATTC	2 cut(s)	526, 911
EcoRII	CCWGG	1 cut(s)	612
EcoRV	GATATC	1 cut(s)	492
EcoT38I	GRGCYC	1 cut(s)	620
Esp3I	CGTCTC	1 cut(s)	229
FalI	AAGNNNNNCTT	2 cut(s)	227, 259
FauI	CCCGC	3 cut(s)	68, 101, 119
FbaI	TGATCA	1 cut(s)	388
FblI	GTMKAC	2 cut(s)	195, 464
Fnu4HI	GCNGC	7 cut(s)	6, 9, 12, 202, 205, 293, 380
FokI	GGATG	4 cut(s)	158, 554, 575, 656
FriOI	GRGCYC	1 cut(s)	620
Fsp4HI	GCNGC	7 cut(s)	6, 9, 12, 202, 205, 293, 380
FspBI	CTAG	3 cut(s)	801, 953, 1004
GluI	GCNGC	7 cut(s)	6, 9, 12, 202, 205, 293, 380
GsaI	CCCAGC	1 cut(s)	374
HaeIII	GGCC	2 cut(s)	8, 826
HapII	CCGG	5 cut(s)	189, 240, 459, 653, 787
HgaI	GACGC	2 cut(s)	124, 134
Hin1I	GRCGYC	1 cut(s)	145
HincII	GTYRAC	2 cut(s)	196, 693
HindII	GTYRAC	2 cut(s)	196, 693
HindIII	AAGCTT	1 cut(s)	1010
HinfI	GANTC	8 cut(s)	229, 255, 329, 341, 797, 885, 902, 956
HpaI	GTTAAC	1 cut(s)	693
HpaII	CCGG	5 cut(s)	189, 240, 459, 653, 787
HphI	GGTGA	5 cut(s)	31, 394, 448, 578, 820
Hpy166II	GTNNAC	3 cut(s)	196, 465, 693
Hpy188III	TCNNGA	5 cut(s)	226, 653, 673, 953, 993
Hpy8I	GTNNAC	3 cut(s)	196, 465, 693
Hpy99I	CGWCG	3 cut(s)	150, 200, 218
HpyAV	CCTTC	1 cut(s)	139
HpyCH4III	ACNGT	4 cut(s)	406, 471, 559, 982
HpyCH4V	TGCA	3 cut(s)	682, 739, 880
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 17, 161, 249, 289, 376, 823
HpyF3I	CTNAG	3 cut(s)	336, 813, 907
Hsp92I	GRCGYC	1 cut(s)	145
Kpn2I	TCCGGA	1 cut(s)	652
Ksp22I	TGATCA	1 cut(s)	388
KspAI	GTTAAC	1 cut(s)	693
KspI	CCGCGG	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	388, 430
LmnI	GCTCC	1 cut(s)	308
Lsp1109I	GCAGC	2 cut(s)	23, 366
LweI	GCATC	1 cut(s)	167
MaeI	CTAG	3 cut(s)	801, 953, 1004
MaeIII	GTNAC	3 cut(s)	117, 400, 808
MalI	GATC	2 cut(s)	390, 432
MboI	GATC	2 cut(s)	388, 430
MboII	GAAGA	3 cut(s)	438, 880, 932
MhlI	GDGCHC	3 cut(s)	161, 424, 620
MluCI	AATT	5 cut(s)	505, 526, 664, 740, 911
MlyI	GAGTC	2 cut(s)	223, 335
MmeI	TCCRAC	4 cut(s)	163, 237, 756, 1066
MroI	TCCGGA	1 cut(s)	652
MseI	TTAA	3 cut(s)	692, 702, 930
MslI	CAYNNNNRTG	1 cut(s)	765
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	5 cut(s)	189, 240, 459, 653, 787
MspR9I	CCNGG	2 cut(s)	460, 614
MvaI	CCWGG	1 cut(s)	614
MvnI	CGCG	3 cut(s)	135, 252, 479
MwoI	GCNNNNNNNGC	7 cut(s)	11, 17, 161, 249, 289, 376, 823
NciI	CCSGG	1 cut(s)	460
NdeII	GATC	2 cut(s)	388, 430
NmeAIII	GCCGAG	2 cut(s)	140, 802
NmuCI	GTSAC	2 cut(s)	400, 808
NotI	GCGGCCGC	1 cut(s)	6
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PfeI	GAWTC	6 cut(s)	255, 329, 797, 885, 902, 956
PkrI	GCNGC	7 cut(s)	7, 10, 13, 203, 206, 294, 381
PleI	GAGTC	2 cut(s)	223, 335
PpsI	GAGTC	2 cut(s)	223, 335
Psp6I	CCWGG	1 cut(s)	612
PspFI	CCCAGC	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	612
PspPI	GGNCC	1 cut(s)	825
RseI	CAYNNNNRTG	1 cut(s)	765
SacII	CCGCGG	1 cut(s)	253
SalI	GTCGAC	1 cut(s)	194
SaqAI	TTAA	3 cut(s)	692, 702, 930
SatI	GCNGC	7 cut(s)	6, 9, 12, 202, 205, 293, 380
Sau3AI	GATC	2 cut(s)	388, 430
Sau96I	GGNCC	1 cut(s)	825
SchI	GAGTC	2 cut(s)	223, 335
ScrFI	CCNGG	2 cut(s)	460, 614
SduI	GDGCHC	3 cut(s)	161, 424, 620
SfaNI	GCATC	1 cut(s)	167
SfcI	CTRYAG	1 cut(s)	981
Sfr303I	CCGCGG	1 cut(s)	253
SgrBI	CCGCGG	1 cut(s)	253
SmiMI	CAYNNNNRTG	1 cut(s)	765
SmlI	CTYRAG	1 cut(s)	630
SmoI	CTYRAG	1 cut(s)	630
Sse9I	AATT	5 cut(s)	505, 526, 664, 740, 911
SspMI	CTAG	3 cut(s)	801, 953, 1004
StyD4I	CCNGG	2 cut(s)	458, 612
TaaI	ACNGT	4 cut(s)	406, 471, 559, 982
TaqI	TCGA	5 cut(s)	195, 227, 246, 344, 915
TasI	AATT	5 cut(s)	505, 526, 664, 740, 911
TauI	GCSGC	5 cut(s)	8, 11, 204, 207, 295
TfiI	GAWTC	6 cut(s)	255, 329, 797, 885, 902, 956
Tru1I	TTAA	3 cut(s)	692, 702, 930
Tru9I	TTAA	3 cut(s)	692, 702, 930
TscAI	CASTG	2 cut(s)	474, 564
TseFI	GTSAC	2 cut(s)	400, 808
TseI	GCWGC	2 cut(s)	11, 379
Tsp45I	GTSAC	2 cut(s)	400, 808
TspDTI	ATGAA	1 cut(s)	362
TspGWI	ACGGA	3 cut(s)	295, 388, 536
TspRI	CASTG	2 cut(s)	474, 564
XapI	RAATTY	3 cut(s)	505, 526, 911
XbaI	TCTAGA	1 cut(s)	952
XmiI	GTMKAC	2 cut(s)	195, 464
XspI	CTAG	3 cut(s)	801, 953, 1004

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.