Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013078.1

Orthogroup ID

OG0003339

Physical Location & Seq

Genomic Coordinates Forward (+)

75859 .. 77772

Gene Structure 1914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013078.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

atggcggccgcagctcgggctttcactctctctcgcctcaccgacctgtcactcaagccccgccacccacaaccaccaccaccacctcccgtttcccgccaccccctcctcgcccgcccgttactcccctccttccgcgcccaacggcgtcgtccggcctgctcggcttccacaatccgatgcctcatctccggcgtcggcggcgggggcgtgtccgacgagttcgtctcgacgcggaagtccggcttcgaccgcggattctccgttatcgccaatatgctgaagcggattgagccgcttgacagctccgttatctccaaaggcgtttccgattccgctaaggactcgatgaagcagaccatctctactatgctcggattgctgccgtccgatcagttctccgtcaccgttagggttagcagagctccccttgatcgcctcctcgcctcttccataatcaccgggtatacactgtggaacgcggagtatcggatatcgttgataaggaattttgacatttctacggagaattctgtggctttgtatgggtcgaagatagatgggagttcggagacggtggatggtgaggaaaggggtagcgagaatgcatttggggcgagtaatcaatacctgggctcaacaactcctcaagttttcggggatttgtctccggaggctttgaattacatccagaggttgcaatcagagttaactaatgttaaggaggaactgaaagctcaaaagcaggaaaatatgcaattagaatatgacacaggacacagaaatgatttgttggattatctccggtccttggattctagtatggtgactgagctatctcggccctcatcattagaggtggaggagattatacaccaacttgttcaaaatatattgcagagattcttcaaagatggagaatcctcagaattcgaggaagatttagttaaagcgaatatagagaatgttctagattctgatggcgaactttctgatactgtaggaacttcacgagattacctagcgaagcttcttttctggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF760

Protein Analysis

347

Amino Acids

38.35

Weight (kDa)

5.25

Isoelectric Point (pI)

54.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G14970
fragaria_vesca	FvH4_6g49830 FvH4_6g49830 FvH4_6g49830 FvH4_6g49830
malus_domestica	MD09G1041100.v1.1 MD17G1042400.v1.1
prunus_persica	Prupe.3G276600_v2.0.a1 Prupe.3G276600_v2.0.a1
pyrus_communis	pycom17g03800
rosa_chinensis	RchiOBHm_Chr2g0169981 RchiOBHm_Chr4g0386121 RchiOBHm_Chr4g0386261 RchiOBHm_Chr4g0386271
rosa_laevigata	RLG00000021916
rosa_multiflora	Rmu_sc0002862.1_g000014 Rmu_sc0003415.1_g000008 Rmu_sc0013078.1_g000018 Rmu_ssc0000389.1_g000006
rosa_roxburghii	Rroxscaffold_2G00081690 Rroxscaffold_5G00333850
rosa_rugosa	Rorug02G0544900
rosa_samantha	Rh2AG616900 Rh2CG598000 Rh2DG639900 Rh3CG265700 Rh4AG010800 Rh4BG007900 Rh4DG118700 Rh5DG240500 Rh7DG285000 Rh7DG341500
rosa_wichuraiana	Rw2G029160 Rw2G034420 Rw2G051100 Rw3G016760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	224, 238
AccI	GTMKAC	1 cut(s)	467
AccII	CGCG	4 cut(s)	138, 235, 255, 482
AccIII	TCCGGA	1 cut(s)	670
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	3 cut(s)	508, 529, 929
AcuI	CTGAAG	1 cut(s)	302
AcyI	GRCGYC	2 cut(s)	148, 195
AfiI	CCNNNNNNNGG	2 cut(s)	15, 811
AgsI	TTSAA	3 cut(s)	682, 887, 910
AjnI	CCWGG	1 cut(s)	630
AluBI	AGCT	6 cut(s)	14, 306, 425, 737, 835, 1030
AluI	AGCT	6 cut(s)	14, 306, 425, 737, 835, 1030
Alw21I	GWGCWC	1 cut(s)	427
Alw26I	GTCTC	3 cut(s)	232, 566, 672
Ama87I	CYCGRG	1 cut(s)	15
Aor13HI	TCCGGA	1 cut(s)	670
AoxI	GGCC	3 cut(s)	6, 156, 842
ApeKI	GCWGC	2 cut(s)	11, 382
ApoI	RAATTY	3 cut(s)	508, 529, 929
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	2 cut(s)	807, 843
AsuC2I	CCSGG	1 cut(s)	463
AsuHPI	GGTGA	5 cut(s)	31, 397, 451, 596, 838
AvaI	CYCGRG	1 cut(s)	15
AvaII	GGWCC	1 cut(s)	807
BanII	GRGCYC	2 cut(s)	427, 638
BauI	CACGAG	1 cut(s)	1011
Bbv12I	GWGCWC	1 cut(s)	427
BbvI	GCAGC	2 cut(s)	23, 369
BccI	CCATC	5 cut(s)	368, 554, 575, 908, 974
BceAI	ACGGC	2 cut(s)	161, 370
BciT130I	CCWGG	1 cut(s)	632
BcnI	CCSGG	1 cut(s)	463
BcoDI	GTCTC	3 cut(s)	232, 566, 672
BfaI	CTAG	3 cut(s)	819, 971, 1022
BfmI	CTRYAG	1 cut(s)	999
BglI	GCCNNNNNGGC	1 cut(s)	164
BisI	GCNGC	6 cut(s)	6, 9, 12, 202, 296, 383
BlsI	GCNGC	6 cut(s)	7, 10, 13, 203, 297, 384
Bme1390I	CCNGG	2 cut(s)	463, 632
Bme18I	GGWCC	1 cut(s)	807
BmeT110I	CYCGRG	1 cut(s)	15
BmgT120I	GGNCC	2 cut(s)	807, 843
BmrFI	CCNGG	2 cut(s)	463, 632
BmsI	GCATC	1 cut(s)	170
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
Bpu10I	CCTNAGC	1 cut(s)	339
BpuEI	CTTGAG	2 cut(s)	38, 633
BpuMI	CCSGG	1 cut(s)	463
BsaHI	GRCGYC	2 cut(s)	148, 195
BsaJI	CCNNGG	3 cut(s)	253, 631, 810
BsaWI	WCCGGW	2 cut(s)	670, 804
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 811
BseAI	TCCGGA	1 cut(s)	670
BseBI	CCWGG	1 cut(s)	632
BseDI	CCNNGG	3 cut(s)	253, 631, 810
BseGI	GGATG	2 cut(s)	586, 687
BseLI	CCNNNNNNNGG	2 cut(s)	15, 811
BseMII	CTCAG	2 cut(s)	822, 939
BseRI	GAGGAG	4 cut(s)	98, 431, 636, 878
BseX3I	CGGCCG	1 cut(s)	6
BseXI	GCAGC	2 cut(s)	23, 369
Bsh1236I	CGCG	4 cut(s)	138, 235, 255, 482
Bsh1285I	CGRYCG	2 cut(s)	9, 253
BshFI	GGCC	3 cut(s)	8, 158, 844
BsiEI	CGRYCG	2 cut(s)	9, 253
BsiHKAI	GWGCWC	1 cut(s)	427
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	6 cut(s)	155, 192, 243, 462, 671, 805
BslI	CCNNNNNNNGG	2 cut(s)	15, 811
BsmAI	GTCTC	3 cut(s)	232, 566, 672
BsmBI	CGTCTC	2 cut(s)	232, 566
BsmI	GAATGC	1 cut(s)	610
BsnI	GGCC	3 cut(s)	8, 158, 844
BsoBI	CYCGRG	1 cut(s)	15
Bsp1286I	GDGCHC	2 cut(s)	427, 638
Bsp13I	TCCGGA	1 cut(s)	670
Bsp143I	GATC	2 cut(s)	391, 433
BspANI	GGCC	3 cut(s)	8, 158, 844
BspCNI	CTCAG	2 cut(s)	823, 938
BspEI	TCCGGA	1 cut(s)	670
BspFNI	CGCG	4 cut(s)	138, 235, 255, 482
BssECI	CCNNGG	3 cut(s)	253, 631, 810
BssMI	GATC	2 cut(s)	391, 433
BssNAI	GTATAC	1 cut(s)	468
BssNI	GRCGYC	2 cut(s)	148, 195
BssSI	CACGAG	1 cut(s)	1011
BssT1I	CCWWGG	1 cut(s)	810
Bst1107I	GTATAC	1 cut(s)	468
Bst2BI	CACGAG	1 cut(s)	1011
Bst2UI	CCWGG	1 cut(s)	632
Bst4CI	ACNGT	4 cut(s)	409, 474, 577, 1000
Bst6I	CTCTTC	1 cut(s)	454
BstACI	GRCGYC	2 cut(s)	148, 195
BstC8I	GCNNGC	2 cut(s)	115, 160
BstDEI	CTNAG	3 cut(s)	339, 831, 925
BstDSI	CCRYGG	1 cut(s)	253
BstF5I	GGATG	2 cut(s)	586, 687
BstFNI	CGCG	4 cut(s)	138, 235, 255, 482
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	2 cut(s)	394, 436
BstMAI	GTCTC	3 cut(s)	232, 566, 672
BstMBI	GATC	2 cut(s)	391, 433
BstMCI	CGRYCG	2 cut(s)	9, 253
BstNI	CCWGG	1 cut(s)	632
BstSCI	CCNGG	2 cut(s)	461, 630
BstSFI	CTRYAG	1 cut(s)	999
BstUI	CGCG	4 cut(s)	138, 235, 255, 482
BstV1I	GCAGC	2 cut(s)	23, 369
BstZ17I	GTATAC	1 cut(s)	468
BstZI	CGGCCG	1 cut(s)	6
BsuRI	GGCC	3 cut(s)	8, 158, 844
BtgI	CCRYGG	1 cut(s)	253
BtsCI	GGATG	2 cut(s)	586, 687
BtsIMutI	CAGTG	1 cut(s)	470
Cac8I	GCNNGC	2 cut(s)	115, 160
CciNI	GCGGCCGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	807, 843
Cfr42I	CCGCGG	1 cut(s)	256
CseI	GACGC	3 cut(s)	137, 184, 241
DdeI	CTNAG	3 cut(s)	339, 831, 925
DpnI	GATC	2 cut(s)	393, 435
DpnII	GATC	2 cut(s)	391, 433
DrdI	GACNNNNNNGTC	2 cut(s)	224, 238
DseDI	GACNNNNNNGTC	2 cut(s)	224, 238
EaeI	YGGCCR	1 cut(s)	6
EagI	CGGCCG	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	454
EarI	CTCTTC	1 cut(s)	454
Ecl136II	GAGCTC	1 cut(s)	425
EclXI	CGGCCG	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	810
Eco24I	GRGCYC	2 cut(s)	427, 638
Eco32I	GATATC	1 cut(s)	495
Eco47I	GGWCC	1 cut(s)	807
Eco52I	CGGCCG	1 cut(s)	6
Eco53kI	GAGCTC	1 cut(s)	425
Eco57I	CTGAAG	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	425
EcoRI	GAATTC	2 cut(s)	529, 929
EcoRII	CCWGG	1 cut(s)	630
EcoRV	GATATC	1 cut(s)	495
EcoT14I	CCWWGG	1 cut(s)	810
EcoT22I	ATGCAT	1 cut(s)	610
EcoT38I	GRGCYC	2 cut(s)	427, 638
ErhI	CCWWGG	1 cut(s)	810
Esp3I	CGTCTC	2 cut(s)	232, 566
FalI	AAGNNNNNCTT	2 cut(s)	230, 262
FauI	CCCGC	4 cut(s)	68, 104, 122, 197
FblI	GTMKAC	1 cut(s)	467
Fnu4HI	GCNGC	6 cut(s)	6, 9, 12, 202, 296, 383
FokI	GGATG	2 cut(s)	593, 674
FriOI	GRGCYC	2 cut(s)	427, 638
Fsp4HI	GCNGC	6 cut(s)	6, 9, 12, 202, 296, 383
FspBI	CTAG	3 cut(s)	819, 971, 1022
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	6 cut(s)	6, 9, 12, 202, 296, 383
HaeIII	GGCC	3 cut(s)	8, 158, 844
HapII	CCGG	6 cut(s)	155, 192, 243, 462, 671, 805
HgaI	GACGC	3 cut(s)	137, 184, 241
HhaI	GCGC	1 cut(s)	140
Hin1I	GRCGYC	2 cut(s)	148, 195
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HincII	GTYRAC	1 cut(s)	711
HindII	GTYRAC	1 cut(s)	711
HindIII	AAGCTT	1 cut(s)	1028
HinfI	GANTC	7 cut(s)	258, 332, 344, 815, 903, 920, 974
HpaI	GTTAAC	1 cut(s)	711
HpaII	CCGG	6 cut(s)	155, 192, 243, 462, 671, 805
HphI	GGTGA	5 cut(s)	31, 397, 451, 596, 838
Hpy166II	GTNNAC	2 cut(s)	468, 711
Hpy188III	TCNNGA	5 cut(s)	229, 671, 691, 971, 1011
Hpy8I	GTNNAC	2 cut(s)	468, 711
Hpy99I	CGWCG	4 cut(s)	153, 200, 221, 235
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	4 cut(s)	409, 474, 577, 1000
HpyCH4V	TGCA	4 cut(s)	608, 700, 757, 898
HpyF3I	CTNAG	3 cut(s)	339, 831, 925
Hsp92I	GRCGYC	2 cut(s)	148, 195
HspAI	GCGC	1 cut(s)	138
Kpn2I	TCCGGA	1 cut(s)	670
KspAI	GTTAAC	1 cut(s)	711
KspI	CCGCGG	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	391, 433
LmnI	GCTCC	2 cut(s)	311, 430
Lsp1109I	GCAGC	2 cut(s)	23, 369
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	3 cut(s)	819, 971, 1022
MaeIII	GTNAC	4 cut(s)	48, 120, 403, 826
MalI	GATC	2 cut(s)	393, 435
MboI	GATC	2 cut(s)	391, 433
MboII	GAAGA	4 cut(s)	441, 565, 898, 950
MhlI	GDGCHC	2 cut(s)	427, 638
MluCI	AATT	5 cut(s)	508, 529, 682, 758, 929
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	2 cut(s)	240, 774
Mph1103I	ATGCAT	1 cut(s)	610
MroI	TCCGGA	1 cut(s)	670
MseI	TTAA	3 cut(s)	710, 720, 948
MslI	CAYNNNNRTG	1 cut(s)	783
MspA1I	CMGCKG	1 cut(s)	255
MspI	CCGG	6 cut(s)	155, 192, 243, 462, 671, 805
MspR9I	CCNGG	2 cut(s)	463, 632
Mva1269I	GAATGC	1 cut(s)	610
MvaI	CCWGG	1 cut(s)	632
MvnI	CGCG	4 cut(s)	138, 235, 255, 482
NciI	CCSGG	1 cut(s)	463
NdeII	GATC	2 cut(s)	391, 433
NmeAIII	GCCGAG	2 cut(s)	143, 820
NmuCI	GTSAC	3 cut(s)	48, 403, 826
NotI	GCGGCCGC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	610
PctI	GAATGC	1 cut(s)	610
PfeI	GAWTC	6 cut(s)	258, 332, 815, 903, 920, 974
PkrI	GCNGC	6 cut(s)	7, 10, 13, 203, 297, 384
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
Psp124BI	GAGCTC	1 cut(s)	427
Psp6I	CCWGG	1 cut(s)	630
PspGI	CCWGG	1 cut(s)	630
PspPI	GGNCC	2 cut(s)	807, 843
RseI	CAYNNNNRTG	1 cut(s)	783
SacI	GAGCTC	1 cut(s)	427
SacII	CCGCGG	1 cut(s)	256
SaqAI	TTAA	3 cut(s)	710, 720, 948
SatI	GCNGC	6 cut(s)	6, 9, 12, 202, 296, 383
Sau3AI	GATC	2 cut(s)	391, 433
Sau96I	GGNCC	2 cut(s)	807, 843
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	2 cut(s)	463, 632
SduI	GDGCHC	2 cut(s)	427, 638
SfaNI	GCATC	1 cut(s)	170
SfcI	CTRYAG	1 cut(s)	999
Sfr303I	CCGCGG	1 cut(s)	256
SgrBI	CCGCGG	1 cut(s)	256
SinI	GGWCC	1 cut(s)	807
SmiMI	CAYNNNNRTG	1 cut(s)	783
SmlI	CTYRAG	2 cut(s)	53, 648
SmoI	CTYRAG	2 cut(s)	53, 648
Sse9I	AATT	5 cut(s)	508, 529, 682, 758, 929
SspMI	CTAG	3 cut(s)	819, 971, 1022
SstI	GAGCTC	1 cut(s)	427
StyD4I	CCNGG	2 cut(s)	461, 630
StyI	CCWWGG	1 cut(s)	810
TaaI	ACNGT	4 cut(s)	409, 474, 577, 1000
TaqI	TCGA	5 cut(s)	230, 249, 347, 551, 933
TasI	AATT	5 cut(s)	508, 529, 682, 758, 929
TauI	GCSGC	4 cut(s)	8, 11, 204, 298
TfiI	GAWTC	6 cut(s)	258, 332, 815, 903, 920, 974
Tru1I	TTAA	3 cut(s)	710, 720, 948
Tru9I	TTAA	3 cut(s)	710, 720, 948
TscAI	CASTG	1 cut(s)	477
TseFI	GTSAC	3 cut(s)	48, 403, 826
TseI	GCWGC	2 cut(s)	11, 382
Tsp45I	GTSAC	3 cut(s)	48, 403, 826
TspDTI	ATGAA	1 cut(s)	365
TspGWI	ACGGA	4 cut(s)	253, 298, 391, 539
TspRI	CASTG	1 cut(s)	477
VpaK11BI	GGWCC	1 cut(s)	807
XapI	RAATTY	3 cut(s)	508, 529, 929
XbaI	TCTAGA	1 cut(s)	970
XmiI	GTMKAC	1 cut(s)	467
XspI	CTAG	3 cut(s)	819, 971, 1022
Zsp2I	ATGCAT	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.