FvH4_6g52160

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001801
Physical Location & Seq
Reverse (-)
38512569 .. 38515502
2934 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g52160.t1

Sequence Viewer

Length: 585 bp
ATGACGAAAAACAAGGGAAGTATTCTCAGAGTTGCTGGAGAGGGAGATGCTGGACCGAGAGGGGGCCCTCCCGGGGATCTTTATGTATATCTTGATGTTGAAGAAATAGAAGGAATTCGAAGAGATGGGATTAATCTCTCTTCAACAGTATCCATAAGCTATCTGGACGCCATATTGGGAACTGTTGTTCAGGTTAAAACAGTTGAAGGATTAACAACACTACAAATTCCACCGGGTACCCAACCAGGTGATATTCTAGTCCTGGCCAAAAAAGGAGTACCAAAGATAAACAAGCCATCTATTCGTGGTGACCATGTGTTTACAATAAAAGTAGCCATACCGAATCGTATCAGTGTCAAGGAACGTGAATTGCTTGAAGAACTTGCTTTACTCAGTAATACTACCGCCAGCCGTTCACGTACTCGACCCAAGACTCAGCCAGTTGCAAAGACTCAAACTGAGGTGGGAACTGTTGCAGATGAAACAGTGGAAGAAGAAGATTCGAGTGACCCATGGAAGAAGTTAAAAGACTTTGCGGGGTCTGTTGCAAATGGTGCTTTAAAATGGCTGAGAGATAACCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

195

Amino Acids

20.91

Weight (kDa)

6.63

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ_C PF01556 5 - 114 1.9e-29 DnaJ C terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 236
AciI CCGC 2 cut(s) 405, 536
AclWI GGATC 1 cut(s) 84
AcoI YGGCCR 1 cut(s) 264
AcsI RAATTY 2 cut(s) 114, 225
AcyI GRCGYC 1 cut(s) 168
AfaI GTAC 3 cut(s) 238, 279, 421
AfiI CCNNNNNNNGG 2 cut(s) 62, 73
AgsI TTSAA 4 cut(s) 101, 144, 206, 377
AjnI CCWGG 2 cut(s) 244, 261
AloI GAACNNNNNNTCC 2 cut(s) 171, 203
AluBI AGCT 1 cut(s) 159
AluI AGCT 1 cut(s) 159
AlwI GGATC 1 cut(s) 84
Ama87I CYCGRG 1 cut(s) 71
AoxI GGCC 2 cut(s) 64, 264
ApaI GGGCCC 1 cut(s) 68
ApoI RAATTY 2 cut(s) 114, 225
AseI ATTAAT 1 cut(s) 132
Asp700I GAANNNNTTC 1 cut(s) 114
Asp718I GGTACC 1 cut(s) 236
AspS9I GGNCC 3 cut(s) 53, 64, 65
AsuC2I CCSGG 3 cut(s) 72, 73, 234
AsuHPI GGTGA 2 cut(s) 260, 320
AsuII TTCGAA 1 cut(s) 118
AvaI CYCGRG 1 cut(s) 71
AvaII GGWCC 1 cut(s) 53
BaeGI GKGCMC 1 cut(s) 68
BalI TGGCCA 1 cut(s) 266
BanI GGYRCC 1 cut(s) 236
BanII GRGCYC 1 cut(s) 68
BccI CCATC 2 cut(s) 119, 304
BceAI ACGGC 1 cut(s) 396
BciT130I CCWGG 2 cut(s) 246, 263
BciVI GTATCC 1 cut(s) 160
BcnI CCSGG 3 cut(s) 72, 73, 234
BfaI CTAG 2 cut(s) 257, 583
BfuI GTATCC 1 cut(s) 160
Bme1390I CCNGG 5 cut(s) 72, 73, 234, 246, 263
Bme18I GGWCC 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 71
BmgT120I GGNCC 3 cut(s) 53, 64, 65
BmiI GGNNCC 3 cut(s) 65, 66, 238
BmrFI CCNGG 5 cut(s) 72, 73, 234, 246, 263
BmsI GCATC 1 cut(s) 37
BplI GAGNNNNNCTC 1 cut(s) 564
BpmI CTGGAG 1 cut(s) 57
Bpu14I TTCGAA 1 cut(s) 118
BpuMI CCSGG 3 cut(s) 72, 73, 234
BsaAI YACGTR 1 cut(s) 419
BsaHI GRCGYC 1 cut(s) 168
BsaJI CCNNGG 3 cut(s) 71, 72, 512
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 73
Bse1I ACTGG 1 cut(s) 440
BseBI CCWGG 2 cut(s) 246, 263
BseDI CCNNGG 3 cut(s) 71, 72, 512
BseLI CCNNNNNNNGG 2 cut(s) 62, 73
BseMII CTCAG 5 cut(s) 40, 406, 449, 450, 560
BseNI ACTGG 1 cut(s) 440
BseSI GKGCMC 1 cut(s) 68
BshFI GGCC 2 cut(s) 66, 266
BshNI GGYRCC 1 cut(s) 236
BsiHKCI CYCGRG 1 cut(s) 71
BsiSI CCGG 2 cut(s) 72, 233
BslI CCNNNNNNNGG 2 cut(s) 62, 73
BsnI GGCC 2 cut(s) 66, 266
BsoBI CYCGRG 1 cut(s) 71
Bsp119I TTCGAA 1 cut(s) 118
Bsp120I GGGCCC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 76
Bsp19I CCATGG 1 cut(s) 512
BspACI CCGC 2 cut(s) 405, 536
BspANI GGCC 2 cut(s) 66, 266
BspCNI CTCAG 5 cut(s) 39, 405, 448, 451, 561
BspLI GGNNCC 3 cut(s) 65, 66, 238
BspPI GGATC 1 cut(s) 84
BspT104I TTCGAA 1 cut(s) 118
BspT107I GGYRCC 1 cut(s) 236
BsrI ACTGG 1 cut(s) 440
BssECI CCNNGG 3 cut(s) 71, 72, 512
BssMI GATC 1 cut(s) 76
BssNI GRCGYC 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 512
Bst2UI CCWGG 2 cut(s) 246, 263
Bst4CI ACNGT 5 cut(s) 148, 184, 202, 472, 487
Bst6I CTCTTC 2 cut(s) 115, 145
BstACI GRCGYC 1 cut(s) 168
BstAPI GCANNNNNTGC 1 cut(s) 554
BstBAI YACGTR 1 cut(s) 419
BstBI TTCGAA 1 cut(s) 118
BstC8I GCNNGC 1 cut(s) 409
BstDEI CTNAG 5 cut(s) 26, 392, 435, 459, 569
BstDSI CCRYGG 1 cut(s) 512
BstEII GGTNACC 1 cut(s) 308
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 1 cut(s) 554
BstNI CCWGG 2 cut(s) 246, 263
BstPI GGTNACC 1 cut(s) 308
BstSCI CCNGG 5 cut(s) 70, 71, 232, 244, 261
BstSLI GKGCMC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuI GTATCC 1 cut(s) 160
BsuRI GGCC 2 cut(s) 66, 266
BtgI CCRYGG 1 cut(s) 512
BtsIMutI CAGTG 2 cut(s) 358, 492
Cac8I GCNNGC 1 cut(s) 409
Cfr13I GGNCC 3 cut(s) 53, 64, 65
Cfr9I CCCGGG 1 cut(s) 71
CseI GACGC 1 cut(s) 176
CsiI ACCWGGT 1 cut(s) 244
Csp6I GTAC 3 cut(s) 237, 278, 420
CviAII CATG 2 cut(s) 314, 513
CviJI RGCY 8 cut(s) 66, 159, 266, 295, 335, 411, 439, 568
CviKI_1 RGCY 8 cut(s) 66, 159, 266, 295, 335, 411, 439, 568
CviQI GTAC 3 cut(s) 237, 278, 420
DdeI CTNAG 5 cut(s) 26, 392, 435, 459, 569
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
DraI TTTAAA 1 cut(s) 561
EaeI YGGCCR 1 cut(s) 264
Eam1104I CTCTTC 2 cut(s) 115, 145
EarI CTCTTC 2 cut(s) 115, 145
Eco130I CCWWGG 1 cut(s) 512
Eco24I GRGCYC 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 53
Eco88I CYCGRG 1 cut(s) 71
Eco91I GGTNACC 1 cut(s) 308
EcoO109I RGGNCCY 2 cut(s) 64, 65
EcoO65I GGTNACC 1 cut(s) 308
EcoRI GAATTC 1 cut(s) 114
EcoRII CCWGG 2 cut(s) 244, 261
EcoT14I CCWWGG 1 cut(s) 512
EcoT38I GRGCYC 1 cut(s) 68
ErhI CCWWGG 1 cut(s) 512
FaeI CATG 2 cut(s) 317, 516
FaiI YATR 7 cut(s) 84, 88, 155, 173, 315, 338, 514
FatI CATG 2 cut(s) 313, 512
FauI CCCGC 1 cut(s) 529
FriOI GRGCYC 1 cut(s) 68
FspBI CTAG 2 cut(s) 257, 583
GsuI CTGGAG 1 cut(s) 57
HaeIII GGCC 2 cut(s) 66, 266
HapII CCGG 2 cut(s) 72, 233
HgaI GACGC 1 cut(s) 176
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 2 cut(s) 317, 516
HinfI GANTC 4 cut(s) 343, 433, 451, 500
HpaII CCGG 2 cut(s) 72, 233
HphI GGTGA 2 cut(s) 260, 320
Hpy166II GTNNAC 2 cut(s) 321, 416
Hpy188I TCNGA 1 cut(s) 29
Hpy188III TCNNGA 2 cut(s) 92, 164
Hpy8I GTNNAC 2 cut(s) 321, 416
HpyAV CCTTC 2 cut(s) 104, 200
HpyCH4III ACNGT 5 cut(s) 148, 184, 202, 472, 487
HpyCH4IV ACGT 2 cut(s) 364, 418
HpyCH4V TGCA 3 cut(s) 446, 476, 548
HpyF10VI GCNNNNNNNGC 1 cut(s) 554
HpyF3I CTNAG 5 cut(s) 26, 392, 435, 459, 569
HpySE526I ACGT 2 cut(s) 364, 418
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 2 cut(s) 317, 516
KpnI GGTACC 1 cut(s) 240
Kzo9I GATC 1 cut(s) 76
LweI GCATC 1 cut(s) 37
MabI ACCWGGT 1 cut(s) 244
MaeI CTAG 2 cut(s) 257, 583
MaeII ACGT 2 cut(s) 364, 418
MaeIII GTNAC 2 cut(s) 308, 506
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 8 cut(s) 113, 132, 132, 389, 503, 506, 509, 529
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 1 cut(s) 68
MlsI TGGCCA 1 cut(s) 266
MluCI AATT 3 cut(s) 114, 225, 368
MluNI TGGCCA 1 cut(s) 266
MlyI GAGTC 2 cut(s) 427, 445
MnlI CCTC 4 cut(s) 34, 53, 78, 454
Mox20I TGGCCA 1 cut(s) 266
MroXI GAANNNNTTC 1 cut(s) 114
MscI TGGCCA 1 cut(s) 266
MseI TTAA 5 cut(s) 132, 195, 212, 524, 560
Msp20I TGGCCA 1 cut(s) 266
MspI CCGG 2 cut(s) 72, 233
MspR9I CCNGG 5 cut(s) 72, 73, 234, 246, 263
MvaI CCWGG 2 cut(s) 246, 263
MwoI GCNNNNNNNGC 1 cut(s) 554
NciI CCSGG 3 cut(s) 72, 73, 234
NcoI CCATGG 1 cut(s) 512
NdeII GATC 1 cut(s) 76
NlaIII CATG 2 cut(s) 317, 516
NlaIV GGNNCC 3 cut(s) 65, 66, 238
NmuCI GTSAC 2 cut(s) 308, 506
NspV TTCGAA 1 cut(s) 118
PdmI GAANNNNTTC 1 cut(s) 114
PfeI GAWTC 2 cut(s) 343, 500
PleI GAGTC 2 cut(s) 427, 445
PpsI GAGTC 2 cut(s) 427, 445
Ppu21I YACGTR 1 cut(s) 419
PshBI ATTAAT 1 cut(s) 132
Psp6I CCWGG 2 cut(s) 244, 261
PspEI GGTNACC 1 cut(s) 308
PspGI CCWGG 2 cut(s) 244, 261
PspN4I GGNNCC 3 cut(s) 65, 66, 238
PspOMI GGGCCC 1 cut(s) 64
PspPI GGNCC 3 cut(s) 53, 64, 65
PsrI GAACNNNNNNTAC 2 cut(s) 372, 404
PsuI RGATCY 1 cut(s) 76
RsaI GTAC 3 cut(s) 238, 279, 421
RsaNI GTAC 3 cut(s) 237, 278, 420
SaqAI TTAA 5 cut(s) 132, 195, 212, 524, 560
Sau3AI GATC 1 cut(s) 76
Sau96I GGNCC 3 cut(s) 53, 64, 65
SchI GAGTC 2 cut(s) 427, 445
ScrFI CCNGG 5 cut(s) 72, 73, 234, 246, 263
SduI GDGCHC 1 cut(s) 68
SetI ASST 7 cut(s) 161, 195, 250, 367, 421, 465, 582
SexAI ACCWGGT 1 cut(s) 244
SfaNI GCATC 1 cut(s) 37
SfuI TTCGAA 1 cut(s) 118
SinI GGWCC 1 cut(s) 53
SmaI CCCGGG 1 cut(s) 73
Sse9I AATT 3 cut(s) 114, 225, 368
SsiI CCGC 2 cut(s) 405, 536
SspMI CTAG 2 cut(s) 257, 583
StyD4I CCNGG 5 cut(s) 70, 71, 232, 244, 261
StyI CCWWGG 1 cut(s) 512
TaaI ACNGT 5 cut(s) 148, 184, 202, 472, 487
TaiI ACGT 2 cut(s) 367, 421
TaqI TCGA 3 cut(s) 118, 424, 503
TaqII GACCGA 1 cut(s) 70
TasI AATT 3 cut(s) 114, 225, 368
TfiI GAWTC 2 cut(s) 343, 500
Tru1I TTAA 5 cut(s) 132, 195, 212, 524, 560
Tru9I TTAA 5 cut(s) 132, 195, 212, 524, 560
TscAI CASTG 2 cut(s) 358, 492
TseFI GTSAC 2 cut(s) 308, 506
Tsp45I GTSAC 2 cut(s) 308, 506
TspDTI ATGAA 1 cut(s) 495
TspMI CCCGGG 1 cut(s) 71
TspRI CASTG 2 cut(s) 358, 492
VpaK11BI GGWCC 1 cut(s) 53
VspI ATTAAT 1 cut(s) 132
XapI RAATTY 2 cut(s) 114, 225
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
XmaI CCCGGG 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 114
XspI CTAG 2 cut(s) 257, 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.