Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001801

Physical Location & Seq

Genomic Coordinates Forward (+)

30331410 .. 30339591

Gene Structure 8182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG169400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGATACTCGTTTTGAAACACGTCGTTGCAGTACTGTTACTAAGGGTGAAGATATACGTTATGACATCAGTTTAGAATTTTCTGAGGCTATATTTGGAGTGGAAAAAGAATTTGAACTTTCCCATCTGGAAACATGTGAAGTTTGTGCTGGGAGTGGAGCAAAAGTAGGCTCCAAAAGGAGGATATGTTCTACTTGTGGTGGGAGGGGTCAAGTTATGAGAACAGAGCAGACACCTTTTGGCTTGTTTTCGCAGGTTTCTGCATGTCCGAATTGTGGTGGAGATGGTGAAGTTATTTCTGAATACTGTCGGAAGTGCTCTGGAGAAGGACGTGTTCGTGTTAAGAAAAGTATCAAAGTGAAAGTTCCTCCTCGTGTTAGCAGGGGAAGTATTCTTAGGGTTGCTGGGAGCTGCTGGACCGAGAGGGGGCCCTCCTGGGGATCTATATGTATATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

152

Amino Acids

16.61

Weight (kDa)

8.81

Isoelectric Point (pI)

35.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ_C	PF01556	19 - 137	3e-06	DnaJ C terminal domain
DnaJ_CXXCXGXG	PF00684	46 - 110	3.3e-16	DnaJ central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80030 AT1G80030 AT1G80030 AT1G80030
fragaria_vesca	FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g52160
malus_domestica	MD17G1213500.v1.1
prunus_persica	Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1
pyrus_communis	pycom12419g00100 pycom17g21840
rosa_chinensis	RchiOBHm_Chr2g0134591 RchiOBHm_Chr2g0134611 RchiOBHm_Chr2g0135071
rosa_laevigata	RLG00000019413 RLG00000019439
rosa_multiflora	Rmu_sc0001385.1_g000012 Rmu_sc0004670.1_g000028
rosa_roxburghii	Rroxscaffold_2G00109510 Rroxscaffold_2G00109560 Rroxscaffold_2G00109870 Rroxscaffold_2G00109950
rosa_rugosa	Rorug02G0318700 Rorug02G0322600 Rorug02G0322700
rosa_samantha	Rh2AG372100 Rh2AG374000 Rh2AG374600 Rh2BG376600 Rh2BG379400 Rh2CG355100 Rh2CG358500 Rh2DG394000 Rh2DG396000 Rh4BG169400
rosa_wichuraiana	Rw0G013540 Rw2G030220 Rw2G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	244
AclWI	GGATC	1 cut(s)	448
AcsI	RAATTY	2 cut(s)	77, 110
AfaI	GTAC	1 cut(s)	34
AfiI	CCNNNNNNNGG	4 cut(s)	180, 275, 426, 437
AflIII	ACRYGT	3 cut(s)	20, 134, 331
AgsI	TTSAA	2 cut(s)	17, 116
AjiI	CACGTC	2 cut(s)	23, 332
AjnI	CCWGG	1 cut(s)	434
AloI	GAACNNNNNNTCC	2 cut(s)	172, 204
AluBI	AGCT	1 cut(s)	411
AluI	AGCT	1 cut(s)	411
Alw21I	GWGCWC	1 cut(s)	320
AlwI	GGATC	1 cut(s)	448
AoxI	GGCC	1 cut(s)	428
ApaI	GGGCCC	1 cut(s)	432
ApeKI	GCWGC	1 cut(s)	411
ApoI	RAATTY	2 cut(s)	77, 110
AspS9I	GGNCC	3 cut(s)	417, 428, 429
AsuHPI	GGTGA	2 cut(s)	59, 299
AvaII	GGWCC	1 cut(s)	417
BaeGI	GKGCMC	1 cut(s)	432
BanII	GRGCYC	1 cut(s)	432
BauI	CACGAG	1 cut(s)	372
Bbv12I	GWGCWC	1 cut(s)	320
BbvI	GCAGC	1 cut(s)	398
BccI	CCATC	2 cut(s)	132, 278
BciT130I	CCWGG	1 cut(s)	436
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	1 cut(s)	412
BlsI	GCNGC	1 cut(s)	413
BmcAI	AGTACT	1 cut(s)	34
Bme1390I	CCNGG	1 cut(s)	436
Bme18I	GGWCC	1 cut(s)	417
BmgBI	CACGTC	2 cut(s)	23, 332
BmgT120I	GGNCC	3 cut(s)	417, 428, 429
BmiI	GGNNCC	3 cut(s)	172, 429, 430
BmrFI	CCNGG	1 cut(s)	436
BpmI	CTGGAG	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	435
BsaXI	ACNNNNNCTCC	4 cut(s)	150, 172, 180, 202
Bsc4I	CCNNNNNNNGG	4 cut(s)	180, 275, 426, 437
BseBI	CCWGG	1 cut(s)	436
BseDI	CCNNGG	1 cut(s)	435
BseLI	CCNNNNNNNGG	4 cut(s)	180, 275, 426, 437
BseMII	CTCAG	1 cut(s)	75
BseRI	GAGGAG	1 cut(s)	360
BseSI	GKGCMC	1 cut(s)	432
BseXI	GCAGC	1 cut(s)	398
BseYI	CCCAGC	2 cut(s)	149, 404
BshFI	GGCC	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	320
BslI	CCNNNNNNNGG	4 cut(s)	180, 275, 426, 437
BsnI	GGCC	1 cut(s)	430
Bsp120I	GGGCCC	1 cut(s)	428
Bsp1286I	GDGCHC	2 cut(s)	320, 432
Bsp143I	GATC	1 cut(s)	440
BspANI	GGCC	1 cut(s)	430
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	3 cut(s)	172, 429, 430
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	448
BssECI	CCNNGG	1 cut(s)	435
BssMI	GATC	1 cut(s)	440
BssSI	CACGAG	1 cut(s)	372
Bst2BI	CACGAG	1 cut(s)	372
Bst2UI	CCWGG	1 cut(s)	436
Bst4CI	ACNGT	2 cut(s)	37, 308
BstDEI	CTNAG	3 cut(s)	42, 84, 395
BstKTI	GATC	1 cut(s)	443
BstMBI	GATC	1 cut(s)	440
BstNI	CCWGG	1 cut(s)	436
BstNSI	RCATGY	2 cut(s)	138, 267
BstSCI	CCNGG	1 cut(s)	434
BstSLI	GKGCMC	1 cut(s)	432
BstV1I	GCAGC	1 cut(s)	398
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BsuRI	GGCC	1 cut(s)	430
BtrI	CACGTC	2 cut(s)	23, 332
BveI	ACCTGC	1 cut(s)	244
Cfr13I	GGNCC	3 cut(s)	417, 428, 429
Csp6I	GTAC	1 cut(s)	33
CviAII	CATG	2 cut(s)	135, 264
CviJI	RGCY	5 cut(s)	89, 171, 243, 411, 430
CviKI_1	RGCY	5 cut(s)	89, 171, 243, 411, 430
CviQI	GTAC	1 cut(s)	33
DdeI	CTNAG	3 cut(s)	42, 84, 395
DpnI	GATC	1 cut(s)	442
DpnII	GATC	1 cut(s)	440
Eco24I	GRGCYC	1 cut(s)	432
Eco47I	GGWCC	1 cut(s)	417
EcoO109I	RGGNCCY	2 cut(s)	428, 429
EcoRII	CCWGG	1 cut(s)	434
EcoT38I	GRGCYC	1 cut(s)	432
FaeI	CATG	2 cut(s)	138, 267
FatI	CATG	2 cut(s)	134, 263
Fnu4HI	GCNGC	1 cut(s)	412
FriOI	GRGCYC	1 cut(s)	432
Fsp4HI	GCNGC	1 cut(s)	412
GluI	GCNGC	1 cut(s)	412
GsaI	CCCAGC	2 cut(s)	153, 408
GsuI	CTGGAG	1 cut(s)	342
HaeIII	GGCC	1 cut(s)	430
Hin1II	CATG	2 cut(s)	138, 267
HphI	GGTGA	2 cut(s)	59, 299
Hpy188I	TCNGA	4 cut(s)	85, 270, 301, 312
Hpy188III	TCNNGA	3 cut(s)	128, 321, 456
Hpy99I	CGWCG	1 cut(s)	27
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	2 cut(s)	37, 308
HpyCH4IV	ACGT	3 cut(s)	22, 58, 331
HpyCH4V	TGCA	2 cut(s)	30, 263
HpyF3I	CTNAG	3 cut(s)	42, 84, 395
HpySE526I	ACGT	3 cut(s)	22, 58, 331
Hsp92II	CATG	2 cut(s)	138, 267
Kzo9I	GATC	1 cut(s)	440
LmnI	GCTCC	3 cut(s)	158, 176, 408
LpnPI	CCDG	9 cut(s)	113, 135, 239, 306, 367, 390, 400, 421, 448
Lsp1109I	GCAGC	1 cut(s)	398
MaeII	ACGT	3 cut(s)	22, 58, 331
MaeIII	GTNAC	1 cut(s)	37
MalI	GATC	1 cut(s)	442
MboI	GATC	1 cut(s)	440
MboII	GAAGA	1 cut(s)	62
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	2 cut(s)	320, 432
MluCI	AATT	3 cut(s)	77, 110, 271
MmeI	TCCRAC	1 cut(s)	290
MnlI	CCTC	7 cut(s)	79, 174, 198, 378, 381, 417, 442
MseI	TTAA	1 cut(s)	342
MspR9I	CCNGG	1 cut(s)	436
MvaI	CCWGG	1 cut(s)	436
NdeII	GATC	1 cut(s)	440
NlaIII	CATG	2 cut(s)	138, 267
NlaIV	GGNNCC	3 cut(s)	172, 429, 430
NspI	RCATGY	2 cut(s)	138, 267
PciI	ACATGT	1 cut(s)	134
PkrI	GCNGC	1 cut(s)	413
PscI	ACATGT	1 cut(s)	134
Psp6I	CCWGG	1 cut(s)	434
PspFI	CCCAGC	2 cut(s)	149, 404
PspGI	CCWGG	1 cut(s)	434
PspN4I	GGNNCC	3 cut(s)	172, 429, 430
PspOMI	GGGCCC	1 cut(s)	428
PspPI	GGNCC	3 cut(s)	417, 428, 429
PsuI	RGATCY	1 cut(s)	440
RsaI	GTAC	1 cut(s)	34
RsaNI	GTAC	1 cut(s)	33
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	1 cut(s)	412
Sau3AI	GATC	1 cut(s)	440
Sau96I	GGNCC	3 cut(s)	417, 428, 429
ScaI	AGTACT	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	436
SduI	GDGCHC	2 cut(s)	320, 432
SetI	ASST	6 cut(s)	25, 61, 238, 258, 334, 413
SinI	GGWCC	1 cut(s)	417
Sse9I	AATT	3 cut(s)	77, 110, 271
StyD4I	CCNGG	1 cut(s)	434
TaaI	ACNGT	2 cut(s)	37, 308
TaiI	ACGT	3 cut(s)	25, 61, 334
TaqII	GACCGA	1 cut(s)	434
TasI	AATT	3 cut(s)	77, 110, 271
TatI	WGTACW	1 cut(s)	32
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TseI	GCWGC	1 cut(s)	411
VpaK11BI	GGWCC	1 cut(s)	417
XapI	RAATTY	2 cut(s)	77, 110
XceI	RCATGY	2 cut(s)	138, 267
ZrmI	AGTACT	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.