Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001801

Physical Location & Seq

Genomic Coordinates Forward (+)

33716921 .. 33725442

Gene Structure 8522 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00109560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGAGTGGGGGATCTTCAACCTATACGACTAATCCTTTCGATTTATTTGAGACATTTTTTGGGTCAAGCAATCCTTTCCCTGATATGGATACTCGTTTTGAAACACGTCGTCGCAGTACTGTTACTAAGGGTGAAGATATACGTTATGACATCACTTTAGAATTTTCTGAGGCTATATTTGGAGTGGAAAAAGAATTTGAACTTTCCCATCTGGAAACATGTGAAGTTTGCGCTGGGAGTGGGGCAAAAGTAGGCTCCAAAAGGAGGATATGTTCTACTTGTGGTGGGAGGGGTCAAGTTATGAGAACAGAGCAGACACCTTTTGGCTTGTTTTCTCAGGTTTCTGCATGTCCGAAATGTGGTGGAGATGGTGAAGTTATTTCTGAATACTGTCGGAATTGCTCTGGAGAAGGACGTGTTCGTGTTAAGAAAAGTATCAAAGTGAAAGTTCCTCCTGGTGTTAGCAGGGGAAGCATTCTCAGAGTTGCTGGAGTGGGAGATGCTGGACCGAGAGGGGGCCCTCCTGGAGATCTTTATGTATATCTTGATGTTGAAGAAATAGAAGGAATTCGAAGAGATGGCATAAATCTCTCTTCAACAGTATCTATAAGCTATCTGGACGCCATATTGGGAACTGTTGTTCAGGTTAAAACAGTGGAAGGATTAACAACACTACAAATTCCACCGGGCACCCAACCAGGTGACATTTTAGTCCTGACCAAAAAAGGAGTACCAAAGCTGAACAAGCCATCAATTCGTGGTGACCATGTGTTTACAATTAAAGTAGCCATACTGAATCGTACCAGTGTCGAGGAACGTGAATTGCTTGAAGAACTTGCTTTACTCAGTAATACTACCGCCAGCCGATCACGTACTCGACCCAAGTCCCAGCCAGTTGCAAATACCCAAACTGATGTGGGAACAGTTGCAGATGAAACAGTGGAAGAAGATGATCAAAGTGACCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

322

Amino Acids

34.78

Weight (kDa)

5.4

Isoelectric Point (pI)

44.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ_C	PF01556	47 - 263	7.6e-40	DnaJ C terminal domain
DnaJ_CXXCXGXG	PF00684	74 - 138	1.6e-15	DnaJ central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80030 AT1G80030 AT1G80030 AT1G80030
fragaria_vesca	FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g52160
malus_domestica	MD17G1213500.v1.1
prunus_persica	Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1
pyrus_communis	pycom12419g00100 pycom17g21840
rosa_chinensis	RchiOBHm_Chr2g0134591 RchiOBHm_Chr2g0134611 RchiOBHm_Chr2g0135071
rosa_laevigata	RLG00000019413 RLG00000019439
rosa_multiflora	Rmu_sc0001385.1_g000012 Rmu_sc0004670.1_g000028
rosa_roxburghii	Rroxscaffold_2G00109510 Rroxscaffold_2G00109560 Rroxscaffold_2G00109870 Rroxscaffold_2G00109950
rosa_rugosa	Rorug02G0318700 Rorug02G0322600 Rorug02G0322700
rosa_samantha	Rh2AG372100 Rh2AG374000 Rh2AG374600 Rh2BG376600 Rh2BG379400 Rh2CG355100 Rh2CG358500 Rh2DG394000 Rh2DG396000 Rh4BG169400
rosa_wichuraiana	Rw0G013540 Rw2G030220 Rw2G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	710
AccB1I	GGYRCC	1 cut(s)	689
AciI	CCGC	1 cut(s)	858
AclWI	GGATC	1 cut(s)	19
AcsI	RAATTY	4 cut(s)	161, 194, 567, 678
AcyI	GRCGYC	1 cut(s)	621
AfaI	GTAC	4 cut(s)	118, 732, 802, 874
AfiI	CCNNNNNNNGG	4 cut(s)	85, 264, 359, 515
AflIII	ACRYGT	3 cut(s)	104, 218, 415
AgsI	TTSAA	6 cut(s)	18, 101, 200, 554, 597, 830
AjiI	CACGTC	2 cut(s)	107, 416
AjnI	CCWGG	3 cut(s)	454, 523, 697
AloI	GAACNNNNNNTCC	4 cut(s)	256, 288, 624, 656
AluBI	AGCT	2 cut(s)	612, 739
AluI	AGCT	2 cut(s)	612, 739
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	19
AoxI	GGCC	1 cut(s)	517
ApaI	GGGCCC	1 cut(s)	521
ApoI	RAATTY	4 cut(s)	161, 194, 567, 678
Asp700I	GAANNNNTTC	1 cut(s)	567
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	3 cut(s)	506, 517, 518
AsuC2I	CCSGG	1 cut(s)	687
AsuHPI	GGTGA	4 cut(s)	143, 383, 713, 773
AsuII	TTCGAA	1 cut(s)	571
AvaII	GGWCC	1 cut(s)	506
BaeGI	GKGCMC	2 cut(s)	521, 692
BanI	GGYRCC	1 cut(s)	689
BanII	GRGCYC	1 cut(s)	521
BccI	CCATC	4 cut(s)	216, 362, 572, 757
BciT130I	CCWGG	3 cut(s)	456, 525, 699
BciVI	GTATCC	1 cut(s)	82
BclI	TGATCA	1 cut(s)	952
BcnI	CCSGG	1 cut(s)	687
BcoDI	GTCTC	1 cut(s)	44
BfuI	GTATCC	1 cut(s)	82
BglII	AGATCT	1 cut(s)	529
BmcAI	AGTACT	1 cut(s)	118
Bme1390I	CCNGG	4 cut(s)	456, 525, 687, 699
Bme18I	GGWCC	1 cut(s)	506
BmgBI	CACGTC	2 cut(s)	107, 416
BmgT120I	GGNCC	3 cut(s)	506, 517, 518
BmiI	GGNNCC	4 cut(s)	256, 518, 519, 691
BmrFI	CCNGG	4 cut(s)	456, 525, 687, 699
BmsI	GCATC	1 cut(s)	490
BoxI	GACNNNNGTC	1 cut(s)	883
BpmI	CTGGAG	3 cut(s)	426, 510, 546
Bpu14I	TTCGAA	1 cut(s)	571
BpuMI	CCSGG	1 cut(s)	687
BsaAI	YACGTR	1 cut(s)	872
BsaHI	GRCGYC	1 cut(s)	621
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	4 cut(s)	85, 264, 359, 515
Bse1I	ACTGG	2 cut(s)	804, 893
BseBI	CCWGG	3 cut(s)	456, 525, 699
BseLI	CCNNNNNNNGG	4 cut(s)	85, 264, 359, 515
BseMII	CTCAG	4 cut(s)	159, 350, 493, 859
BseNI	ACTGG	2 cut(s)	804, 893
BseSI	GKGCMC	2 cut(s)	521, 692
BseYI	CCCAGC	2 cut(s)	233, 888
BshFI	GGCC	1 cut(s)	519
BshNI	GGYRCC	1 cut(s)	689
BsiSI	CCGG	1 cut(s)	686
BslFI	GGGAC	1 cut(s)	871
BslI	CCNNNNNNNGG	4 cut(s)	85, 264, 359, 515
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	871
BsmI	GAATGC	1 cut(s)	474
BsnI	GGCC	1 cut(s)	519
Bsp119I	TTCGAA	1 cut(s)	571
Bsp120I	GGGCCC	1 cut(s)	517
Bsp1286I	GDGCHC	2 cut(s)	521, 692
Bsp143I	GATC	4 cut(s)	11, 529, 866, 952
BspACI	CCGC	1 cut(s)	858
BspANI	GGCC	1 cut(s)	519
BspCNI	CTCAG	4 cut(s)	160, 349, 492, 858
BspLI	GGNNCC	4 cut(s)	256, 518, 519, 691
BspPI	GGATC	1 cut(s)	19
BspT104I	TTCGAA	1 cut(s)	571
BspT107I	GGYRCC	1 cut(s)	689
BsrI	ACTGG	2 cut(s)	804, 893
BssMI	GATC	4 cut(s)	11, 529, 866, 952
BssNI	GRCGYC	1 cut(s)	621
Bst2UI	CCWGG	3 cut(s)	456, 525, 699
Bst4CI	ACNGT	7 cut(s)	121, 392, 601, 637, 655, 925, 940
Bst6I	CTCTTC	2 cut(s)	568, 598
BstACI	GRCGYC	1 cut(s)	621
BstBAI	YACGTR	1 cut(s)	872
BstBI	TTCGAA	1 cut(s)	571
BstC8I	GCNNGC	1 cut(s)	862
BstDEI	CTNAG	5 cut(s)	126, 168, 336, 479, 845
BstEII	GGTNACC	1 cut(s)	761
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	4 cut(s)	14, 532, 869, 955
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	4 cut(s)	11, 529, 866, 952
BstMWI	GCNNNNNNNGC	2 cut(s)	471, 745
BstNI	CCWGG	3 cut(s)	456, 525, 699
BstNSI	RCATGY	2 cut(s)	222, 351
BstPAI	GACNNNNGTC	1 cut(s)	883
BstPI	GGTNACC	1 cut(s)	761
BstSCI	CCNGG	4 cut(s)	454, 523, 685, 697
BstSLI	GKGCMC	2 cut(s)	521, 692
BstX2I	RGATCY	2 cut(s)	11, 529
BstYI	RGATCY	2 cut(s)	11, 529
BsuI	GTATCC	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	519
BtrI	CACGTC	2 cut(s)	107, 416
BtsIMutI	CAGTG	3 cut(s)	660, 811, 945
Cac8I	GCNNGC	1 cut(s)	862
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	3 cut(s)	506, 517, 518
CseI	GACGC	1 cut(s)	629
CsiI	ACCWGGT	1 cut(s)	697
Csp6I	GTAC	4 cut(s)	117, 731, 801, 873
CviAII	CATG	4 cut(s)	219, 348, 767, 966
CviQI	GTAC	4 cut(s)	117, 731, 801, 873
DdeI	CTNAG	5 cut(s)	126, 168, 336, 479, 845
DpnI	GATC	4 cut(s)	13, 531, 868, 954
DpnII	GATC	4 cut(s)	11, 529, 866, 952
DrdI	GACNNNNNNGTC	1 cut(s)	710
DseDI	GACNNNNNNGTC	1 cut(s)	710
Eam1104I	CTCTTC	2 cut(s)	568, 598
EarI	CTCTTC	2 cut(s)	568, 598
Eco24I	GRGCYC	1 cut(s)	521
Eco47I	GGWCC	1 cut(s)	506
Eco91I	GGTNACC	1 cut(s)	761
EcoO109I	RGGNCCY	2 cut(s)	517, 518
EcoO65I	GGTNACC	1 cut(s)	761
EcoRI	GAATTC	1 cut(s)	567
EcoRII	CCWGG	3 cut(s)	454, 523, 697
EcoT38I	GRGCYC	1 cut(s)	521
FaeI	CATG	4 cut(s)	222, 351, 770, 969
FalI	AAGNNNNNCTT	2 cut(s)	58, 90
FaqI	GGGAC	1 cut(s)	871
FatI	CATG	4 cut(s)	218, 347, 766, 965
FbaI	TGATCA	1 cut(s)	952
FriOI	GRGCYC	1 cut(s)	521
GlaI	GCGC	1 cut(s)	232
GsaI	CCCAGC	2 cut(s)	237, 892
GsuI	CTGGAG	3 cut(s)	426, 510, 546
HaeIII	GGCC	1 cut(s)	519
HapII	CCGG	1 cut(s)	686
HgaI	GACGC	1 cut(s)	629
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	621
Hin1II	CATG	4 cut(s)	222, 351, 770, 969
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	1 cut(s)	796
HpaII	CCGG	1 cut(s)	686
HphI	GGTGA	4 cut(s)	143, 383, 713, 773
Hpy166II	GTNNAC	1 cut(s)	774
Hpy188I	TCNGA	5 cut(s)	169, 354, 385, 396, 482
Hpy188III	TCNNGA	5 cut(s)	212, 405, 545, 617, 715
Hpy8I	GTNNAC	1 cut(s)	774
Hpy99I	CGWCG	2 cut(s)	111, 114
HpyAV	CCTTC	3 cut(s)	404, 557, 653
HpyCH4III	ACNGT	7 cut(s)	121, 392, 601, 637, 655, 925, 940
HpyCH4IV	ACGT	5 cut(s)	106, 142, 415, 817, 871
HpyCH4V	TGCA	3 cut(s)	347, 899, 929
HpyF10VI	GCNNNNNNNGC	2 cut(s)	471, 745
HpyF3I	CTNAG	5 cut(s)	126, 168, 336, 479, 845
HpySE526I	ACGT	5 cut(s)	106, 142, 415, 817, 871
Hsp92I	GRCGYC	1 cut(s)	621
Hsp92II	CATG	4 cut(s)	222, 351, 770, 969
HspAI	GCGC	1 cut(s)	231
Ksp22I	TGATCA	1 cut(s)	952
Kzo9I	GATC	4 cut(s)	11, 529, 866, 952
LmnI	GCTCC	1 cut(s)	260
LweI	GCATC	1 cut(s)	490
MabI	ACCWGGT	1 cut(s)	697
MaeII	ACGT	5 cut(s)	106, 142, 415, 817, 871
MaeIII	GTNAC	4 cut(s)	121, 701, 761, 959
MalI	GATC	4 cut(s)	13, 531, 868, 954
MboI	GATC	4 cut(s)	11, 529, 866, 952
MboII	GAAGA	8 cut(s)	6, 146, 566, 585, 585, 842, 956, 959
MflI	RGATCY	2 cut(s)	11, 529
MhlI	GDGCHC	2 cut(s)	521, 692
MluCI	AATT	8 cut(s)	161, 194, 397, 567, 678, 753, 777, 821
MmeI	TCCRAC	1 cut(s)	374
MnlI	CCTC	7 cut(s)	163, 258, 282, 462, 506, 531, 805
MroXI	GAANNNNTTC	1 cut(s)	567
MseI	TTAA	4 cut(s)	426, 648, 665, 780
MspI	CCGG	1 cut(s)	686
MspR9I	CCNGG	4 cut(s)	456, 525, 687, 699
Mva1269I	GAATGC	1 cut(s)	474
MvaI	CCWGG	3 cut(s)	456, 525, 699
MwoI	GCNNNNNNNGC	2 cut(s)	471, 745
NciI	CCSGG	1 cut(s)	687
NdeII	GATC	4 cut(s)	11, 529, 866, 952
NlaIII	CATG	4 cut(s)	222, 351, 770, 969
NlaIV	GGNNCC	4 cut(s)	256, 518, 519, 691
NmuCI	GTSAC	3 cut(s)	701, 761, 959
NspI	RCATGY	2 cut(s)	222, 351
NspV	TTCGAA	1 cut(s)	571
PciI	ACATGT	1 cut(s)	218
PctI	GAATGC	1 cut(s)	474
PdmI	GAANNNNTTC	1 cut(s)	567
PfeI	GAWTC	1 cut(s)	796
PfoI	TCCNGGA	1 cut(s)	523
Ppu21I	YACGTR	1 cut(s)	872
PscI	ACATGT	1 cut(s)	218
PshAI	GACNNNNGTC	1 cut(s)	883
Psp6I	CCWGG	3 cut(s)	454, 523, 697
PspEI	GGTNACC	1 cut(s)	761
PspFI	CCCAGC	2 cut(s)	233, 888
PspGI	CCWGG	3 cut(s)	454, 523, 697
PspN4I	GGNNCC	4 cut(s)	256, 518, 519, 691
PspOMI	GGGCCC	1 cut(s)	517
PspPI	GGNCC	3 cut(s)	506, 517, 518
PsrI	GAACNNNNNNTAC	2 cut(s)	825, 857
PsuI	RGATCY	2 cut(s)	11, 529
RsaI	GTAC	4 cut(s)	118, 732, 802, 874
RsaNI	GTAC	4 cut(s)	117, 731, 801, 873
SaqAI	TTAA	4 cut(s)	426, 648, 665, 780
Sau3AI	GATC	4 cut(s)	11, 529, 866, 952
Sau96I	GGNCC	3 cut(s)	506, 517, 518
ScaI	AGTACT	1 cut(s)	118
ScrFI	CCNGG	4 cut(s)	456, 525, 687, 699
SduI	GDGCHC	2 cut(s)	521, 692
SexAI	ACCWGGT	1 cut(s)	697
SfaNI	GCATC	1 cut(s)	490
SfuI	TTCGAA	1 cut(s)	571
SinI	GGWCC	1 cut(s)	506
Sse9I	AATT	8 cut(s)	161, 194, 397, 567, 678, 753, 777, 821
SsiI	CCGC	1 cut(s)	858
StyD4I	CCNGG	4 cut(s)	454, 523, 685, 697
TaaI	ACNGT	7 cut(s)	121, 392, 601, 637, 655, 925, 940
TaiI	ACGT	5 cut(s)	109, 145, 418, 820, 874
TaqI	TCGA	4 cut(s)	39, 571, 810, 877
TaqII	GACCGA	1 cut(s)	523
TasI	AATT	8 cut(s)	161, 194, 397, 567, 678, 753, 777, 821
TatI	WGTACW	1 cut(s)	116
TfiI	GAWTC	1 cut(s)	796
Tru1I	TTAA	4 cut(s)	426, 648, 665, 780
Tru9I	TTAA	4 cut(s)	426, 648, 665, 780
TscAI	CASTG	3 cut(s)	660, 811, 945
TseFI	GTSAC	3 cut(s)	701, 761, 959
Tsp45I	GTSAC	3 cut(s)	701, 761, 959
TspDTI	ATGAA	1 cut(s)	948
TspRI	CASTG	3 cut(s)	660, 811, 945
VpaK11BI	GGWCC	1 cut(s)	506
XapI	RAATTY	4 cut(s)	161, 194, 567, 678
XceI	RCATGY	2 cut(s)	222, 351
XmnI	GAANNNNTTC	1 cut(s)	567
ZrmI	AGTACT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.