Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001801

Physical Location & Seq

Genomic Coordinates Forward (+)

49437592 .. 49445274

Gene Structure 7683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G030220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGCCGCCGCGGCCCTCCCTCCCTCATCTCCTCACCTTGTCTTCCCGCCGCCGCCGTCGCCGTCGCCGTCGCCGTCTTCTTTCTCTGCTCTCGGCGGGTCCCACGAGAGCTTCGCGTCACTCAATTTGACTACTCGTCCGTGGAACAAGTTGAGCAGGAAACGCCGCGTTGGGACGGTGTTCGCCGCTTCCGACGTGTATAAGCAACTAGGGAGTTGTAAAAGTTTTGTGTTTGTGCAGACTAATCCTTTCGATTTAGTTGAGACATTTTTTGGGTCAAGCAATCCTTTACTTGATATGGATACTCGTTTTGAAACACGTCGTTGCAGTACTGTTACTAAGGGTGAAGATATACGTTATGACATCACTTTAGAATTTTCTGAGGCTATATTTGGAGTGGAAAAAGAATTTGAACTTTCTCATCTGGAAACATGTGAAGTTTGCGCTGGGAGTGGAGCAAAAGTAGGCTCCAAAAGGAGGATATGTTCTACTTGTGGTGGGAGGGGTCAAGTTTCTGCATGTCTGGATTGTGGTGGAGATGGTGAAGTTATTTCTGAATACTTTCGGAAGTGCTCTGGAGAAGGACGTGTTCGTGTTAAGAAAAGTATCAAAGTGAAGGTTCCTCCTCGTGTTAGCAGGGGAAATGGCATAAATCTCTCTTCAACAGTATCTCTAAGCTATCTGGATGCCATATTGGGAACTGTTATTCAAGTAAAGTTTTCATTGGATTATTTCGTGCTCCCATTTTATTTCCTGACCAAAAAAGGAGTACCAAAGCTGAACAAGCCATCAATTTGTGGTGACCATGTGTTTGCAATTAAAGTAGCCATAGCGAATCGTACCAGCGTCAAGGAACGTGAATTGCTTGAAGAACTTGCTTTACTCAGTAATACTACCGCCAGCCGTTTACGTACTCGACCCAAGTCCCAGCCAGTTGCAAGGCTTCTCCGGCCAAGCTCTCTCACCTCAGGCCACCTCAAGACACCAGACCACCTCCCTTGGCTTCGCCTCAGGCCAGGATCCGACCGTTGGATCATCGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

347

Amino Acids

38.05

Weight (kDa)

9.6

Isoelectric Point (pI)

48.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80030 AT1G80030 AT1G80030 AT1G80030
fragaria_vesca	FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g52160
malus_domestica	MD17G1213500.v1.1
prunus_persica	Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1
pyrus_communis	pycom12419g00100 pycom17g21840
rosa_chinensis	RchiOBHm_Chr2g0134591 RchiOBHm_Chr2g0134611 RchiOBHm_Chr2g0135071
rosa_laevigata	RLG00000019413 RLG00000019439
rosa_multiflora	Rmu_sc0001385.1_g000012 Rmu_sc0004670.1_g000028
rosa_roxburghii	Rroxscaffold_2G00109510 Rroxscaffold_2G00109560 Rroxscaffold_2G00109870 Rroxscaffold_2G00109950
rosa_rugosa	Rorug02G0318700 Rorug02G0322600 Rorug02G0322700
rosa_samantha	Rh2AG372100 Rh2AG374000 Rh2AG374600 Rh2BG376600 Rh2BG379400 Rh2CG355100 Rh2CG358500 Rh2DG394000 Rh2DG396000 Rh4BG169400
rosa_wichuraiana	Rw0G013540 Rw2G030220 Rw2G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	11, 116, 168
AclWI	GGATC	3 cut(s)	1014, 1027, 1040
AcoI	YGGCCR	2 cut(s)	3, 950
AcsI	RAATTY	2 cut(s)	374, 407
AfaI	GTAC	4 cut(s)	331, 771, 841, 913
AfiI	CCNNNNNNNGG	2 cut(s)	477, 1029
AflIII	ACRYGT	4 cut(s)	195, 317, 431, 586
AgsI	TTSAA	5 cut(s)	314, 413, 663, 710, 869
AhdI	GACNNNNNGTC	1 cut(s)	135
AjiI	CACGTC	3 cut(s)	196, 320, 587
AjnI	CCWGG	1 cut(s)	1015
AloI	GAACNNNNNNTCC	2 cut(s)	469, 501
AluBI	AGCT	4 cut(s)	111, 678, 778, 957
AluI	AGCT	4 cut(s)	111, 678, 778, 957
Alw21I	GWGCWC	2 cut(s)	575, 741
Alw26I	GTCTC	1 cut(s)	257
AlwI	GGATC	3 cut(s)	1014, 1027, 1040
AoxI	GGCC	5 cut(s)	3, 12, 950, 970, 1013
ApoI	RAATTY	2 cut(s)	374, 407
ArsI	GACNNNNNNTTYG	2 cut(s)	794, 826
Asp700I	GAANNNNTTC	1 cut(s)	561
AspLEI	GCGC	1 cut(s)	446
AspS9I	GGNCC	2 cut(s)	13, 99
AsuHPI	GGTGA	5 cut(s)	26, 356, 554, 812, 955
AvaII	GGWCC	1 cut(s)	99
AxyI	CCTNAGG	2 cut(s)	967, 1010
BamHI	GGATCC	1 cut(s)	1019
BauI	CACGAG	2 cut(s)	104, 627
BbsI	GAAGAC	2 cut(s)	34, 69
Bbv12I	GWGCWC	2 cut(s)	575, 741
BccI	CCATC	2 cut(s)	533, 796
BceAI	ACGGC	5 cut(s)	40, 46, 52, 58, 888
BciT130I	CCWGG	1 cut(s)	1017
BciVI	GTATCC	1 cut(s)	295
BcoDI	GTCTC	1 cut(s)	257
BfaI	CTAG	1 cut(s)	209
BfuI	GTATCC	1 cut(s)	295
BglI	GCCNNNNNGGC	1 cut(s)	11
BisI	GCNGC	7 cut(s)	6, 9, 12, 50, 53, 166, 186
BlsI	GCNGC	7 cut(s)	7, 10, 13, 51, 54, 167, 187
BmcAI	AGTACT	1 cut(s)	331
Bme1390I	CCNGG	1 cut(s)	1017
Bme18I	GGWCC	1 cut(s)	99
BmeRI	GACNNNNNGTC	1 cut(s)	135
BmgBI	CACGTC	3 cut(s)	196, 320, 587
BmgT120I	GGNCC	2 cut(s)	13, 99
BmiI	GGNNCC	5 cut(s)	100, 101, 469, 621, 1021
BmrFI	CCNGG	1 cut(s)	1017
BmsI	GCATC	1 cut(s)	676
BoxI	GACNNNNGTC	1 cut(s)	922
BpiI	GAAGAC	2 cut(s)	34, 69
BpmI	CTGGAG	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	962
BsaAI	YACGTR	1 cut(s)	911
BsaJI	CCNNGG	3 cut(s)	9, 140, 998
BsaXI	ACNNNNNCTCC	4 cut(s)	447, 469, 477, 499
Bsc4I	CCNNNNNNNGG	2 cut(s)	477, 1029
Bse1I	ACTGG	1 cut(s)	932
Bse21I	CCTNAGG	2 cut(s)	967, 1010
BseBI	CCWGG	1 cut(s)	1017
BseDI	CCNNGG	3 cut(s)	9, 140, 998
BseGI	GGATG	1 cut(s)	691
BseLI	CCNNNNNNNGG	2 cut(s)	477, 1029
BseMII	CTCAG	4 cut(s)	372, 898, 981, 1024
BseNI	ACTGG	1 cut(s)	932
BseRI	GAGGAG	2 cut(s)	21, 615
BseYI	CCCAGC	2 cut(s)	446, 927
BsgI	GTGCAG	1 cut(s)	257
Bsh1236I	CGCG	3 cut(s)	11, 116, 168
Bsh1285I	CGRYCG	1 cut(s)	1027
BshFI	GGCC	5 cut(s)	5, 14, 952, 972, 1015
BsiEI	CGRYCG	1 cut(s)	1027
BsiHKAI	GWGCWC	2 cut(s)	575, 741
BsiSI	CCGG	1 cut(s)	949
BslFI	GGGAC	3 cut(s)	85, 187, 910
BslI	CCNNNNNNNGG	2 cut(s)	477, 1029
BsmAI	GTCTC	1 cut(s)	257
BsmFI	GGGAC	3 cut(s)	85, 187, 910
BsnI	GGCC	5 cut(s)	5, 14, 952, 972, 1015
Bsp1286I	GDGCHC	2 cut(s)	575, 741
Bsp143I	GATC	2 cut(s)	1019, 1032
BspANI	GGCC	5 cut(s)	5, 14, 952, 972, 1015
BspCNI	CTCAG	4 cut(s)	373, 897, 980, 1023
BspFNI	CGCG	3 cut(s)	11, 116, 168
BspLI	GGNNCC	5 cut(s)	100, 101, 469, 621, 1021
BspPI	GGATC	3 cut(s)	1014, 1027, 1040
BsrI	ACTGG	1 cut(s)	932
BssECI	CCNNGG	3 cut(s)	9, 140, 998
BssMI	GATC	2 cut(s)	1019, 1032
BssSI	CACGAG	2 cut(s)	104, 627
BssT1I	CCWWGG	1 cut(s)	998
Bst2BI	CACGAG	2 cut(s)	104, 627
Bst2UI	CCWGG	1 cut(s)	1017
Bst4CI	ACNGT	5 cut(s)	178, 334, 667, 703, 1028
Bst6I	CTCTTC	1 cut(s)	664
BstBAI	YACGTR	1 cut(s)	911
BstC8I	GCNNGC	1 cut(s)	901
BstDEI	CTNAG	6 cut(s)	339, 381, 674, 884, 967, 1010
BstDSI	CCRYGG	2 cut(s)	9, 140
BstEII	GGTNACC	1 cut(s)	800
BstF5I	GGATG	1 cut(s)	691
BstFNI	CGCG	3 cut(s)	11, 116, 168
BstHHI	GCGC	1 cut(s)	446
BstKTI	GATC	2 cut(s)	1022, 1035
BstMAI	GTCTC	1 cut(s)	257
BstMBI	GATC	2 cut(s)	1019, 1032
BstMCI	CGRYCG	1 cut(s)	1027
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 58, 162, 784, 949
BstNI	CCWGG	1 cut(s)	1017
BstNSI	RCATGY	2 cut(s)	435, 522
BstPAI	GACNNNNGTC	1 cut(s)	922
BstPI	GGTNACC	1 cut(s)	800
BstSCI	CCNGG	1 cut(s)	1015
BstSNI	TACGTA	1 cut(s)	911
BstUI	CGCG	3 cut(s)	11, 116, 168
BstV2I	GAAGAC	2 cut(s)	34, 69
BstX2I	RGATCY	1 cut(s)	1019
BstYI	RGATCY	1 cut(s)	1019
Bsu36I	CCTNAGG	2 cut(s)	967, 1010
BsuI	GTATCC	1 cut(s)	295
BsuRI	GGCC	5 cut(s)	5, 14, 952, 972, 1015
BtgI	CCRYGG	2 cut(s)	9, 140
BtrI	CACGTC	3 cut(s)	196, 320, 587
BtsCI	GGATG	1 cut(s)	691
Cac8I	GCNNGC	1 cut(s)	901
CfoI	GCGC	1 cut(s)	446
Cfr13I	GGNCC	2 cut(s)	13, 99
Cfr42I	CCGCGG	1 cut(s)	12
CseI	GACGC	2 cut(s)	105, 835
Csp6I	GTAC	4 cut(s)	330, 770, 840, 912
CspCI	CAANNNNNGTGG	2 cut(s)	980, 1015
CviAII	CATG	3 cut(s)	432, 519, 806
CviQI	GTAC	4 cut(s)	330, 770, 840, 912
DdeI	CTNAG	6 cut(s)	339, 381, 674, 884, 967, 1010
DpnI	GATC	2 cut(s)	1021, 1034
DpnII	GATC	2 cut(s)	1019, 1032
DriI	GACNNNNNGTC	1 cut(s)	135
EaeI	YGGCCR	2 cut(s)	3, 950
Eam1104I	CTCTTC	1 cut(s)	664
Eam1105I	GACNNNNNGTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	664
Eco105I	TACGTA	1 cut(s)	911
Eco130I	CCWWGG	1 cut(s)	998
Eco47I	GGWCC	1 cut(s)	99
Eco81I	CCTNAGG	2 cut(s)	967, 1010
Eco91I	GGTNACC	1 cut(s)	800
EcoO109I	RGGNCCY	1 cut(s)	99
EcoO65I	GGTNACC	1 cut(s)	800
EcoRII	CCWGG	1 cut(s)	1015
EcoT14I	CCWWGG	1 cut(s)	998
ErhI	CCWWGG	1 cut(s)	998
FaeI	CATG	3 cut(s)	435, 522, 809
FalI	AAGNNNNNCTT	2 cut(s)	271, 303
FaqI	GGGAC	3 cut(s)	85, 187, 910
FatI	CATG	3 cut(s)	431, 518, 805
FauI	CCCGC	2 cut(s)	54, 89
Fnu4HI	GCNGC	7 cut(s)	6, 9, 12, 50, 53, 166, 186
FokI	GGATG	1 cut(s)	698
Fsp4HI	GCNGC	7 cut(s)	6, 9, 12, 50, 53, 166, 186
FspBI	CTAG	1 cut(s)	209
GlaI	GCGC	1 cut(s)	445
GluI	GCNGC	7 cut(s)	6, 9, 12, 50, 53, 166, 186
GsaI	CCCAGC	2 cut(s)	450, 931
GsuI	CTGGAG	1 cut(s)	597
HaeIII	GGCC	5 cut(s)	5, 14, 952, 972, 1015
HapII	CCGG	1 cut(s)	949
HgaI	GACGC	2 cut(s)	105, 835
HhaI	GCGC	1 cut(s)	446
Hin1II	CATG	3 cut(s)	435, 522, 809
Hin6I	GCGC	1 cut(s)	444
HinP1I	GCGC	1 cut(s)	444
HinfI	GANTC	1 cut(s)	835
HpaII	CCGG	1 cut(s)	949
HphI	GGTGA	5 cut(s)	26, 356, 554, 812, 955
Hpy166II	GTNNAC	1 cut(s)	908
Hpy188I	TCNGA	5 cut(s)	193, 382, 556, 567, 1024
Hpy188III	TCNNGA	6 cut(s)	425, 524, 576, 683, 754, 979
Hpy8I	GTNNAC	1 cut(s)	908
Hpy99I	CGWCG	5 cut(s)	61, 67, 73, 197, 324
HpyAV	CCTTC	2 cut(s)	575, 610
HpyCH4III	ACNGT	5 cut(s)	178, 334, 667, 703, 1028
HpyCH4IV	ACGT	6 cut(s)	195, 319, 355, 586, 856, 910
HpyCH4V	TGCA	5 cut(s)	238, 327, 518, 815, 938
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 58, 162, 784, 949
HpyF3I	CTNAG	6 cut(s)	339, 381, 674, 884, 967, 1010
HpySE526I	ACGT	6 cut(s)	195, 319, 355, 586, 856, 910
Hsp92II	CATG	3 cut(s)	435, 522, 809
HspAI	GCGC	1 cut(s)	444
KflI	GGGWCCC	1 cut(s)	99
KspI	CCGCGG	1 cut(s)	12
Kzo9I	GATC	2 cut(s)	1019, 1032
LmnI	GCTCC	3 cut(s)	455, 473, 744
LweI	GCATC	1 cut(s)	676
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	6 cut(s)	195, 319, 355, 586, 856, 910
MaeIII	GTNAC	3 cut(s)	117, 334, 800
MalI	GATC	2 cut(s)	1021, 1034
MboI	GATC	2 cut(s)	1019, 1032
MboII	GAAGA	5 cut(s)	34, 69, 359, 651, 881
MflI	RGATCY	1 cut(s)	1019
MhlI	GDGCHC	2 cut(s)	575, 741
MluCI	AATT	6 cut(s)	124, 374, 407, 792, 816, 860
MmeI	TCCRAC	2 cut(s)	216, 1010
MroXI	GAANNNNTTC	1 cut(s)	561
MseI	TTAA	2 cut(s)	597, 819
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	1 cut(s)	949
MspR9I	CCNGG	1 cut(s)	1017
MvaI	CCWGG	1 cut(s)	1017
MvnI	CGCG	3 cut(s)	11, 116, 168
MwoI	GCNNNNNNNGC	5 cut(s)	11, 58, 162, 784, 949
NdeII	GATC	2 cut(s)	1019, 1032
NlaIII	CATG	3 cut(s)	435, 522, 809
NlaIV	GGNNCC	5 cut(s)	100, 101, 469, 621, 1021
NmeAIII	GCCGAG	1 cut(s)	72
NmuCI	GTSAC	2 cut(s)	117, 800
NspI	RCATGY	2 cut(s)	435, 522
PciI	ACATGT	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	3 cut(s)	65, 71, 189
PdmI	GAANNNNTTC	1 cut(s)	561
PfeI	GAWTC	1 cut(s)	835
PkrI	GCNGC	7 cut(s)	7, 10, 13, 51, 54, 167, 187
Ppu21I	YACGTR	1 cut(s)	911
PpuMI	RGGWCCY	1 cut(s)	99
PscI	ACATGT	1 cut(s)	431
PshAI	GACNNNNGTC	1 cut(s)	922
Psp5II	RGGWCCY	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	1015
PspEI	GGTNACC	1 cut(s)	800
PspFI	CCCAGC	2 cut(s)	446, 927
PspGI	CCWGG	1 cut(s)	1015
PspN4I	GGNNCC	5 cut(s)	100, 101, 469, 621, 1021
PspPI	GGNCC	2 cut(s)	13, 99
PspPPI	RGGWCCY	1 cut(s)	99
PsrI	GAACNNNNNNTAC	2 cut(s)	864, 896
PsuI	RGATCY	1 cut(s)	1019
RsaI	GTAC	4 cut(s)	331, 771, 841, 913
RsaNI	GTAC	4 cut(s)	330, 770, 840, 912
SacII	CCGCGG	1 cut(s)	12
SaqAI	TTAA	2 cut(s)	597, 819
SatI	GCNGC	7 cut(s)	6, 9, 12, 50, 53, 166, 186
Sau3AI	GATC	2 cut(s)	1019, 1032
Sau96I	GGNCC	2 cut(s)	13, 99
ScaI	AGTACT	1 cut(s)	331
ScrFI	CCNGG	1 cut(s)	1017
SduI	GDGCHC	2 cut(s)	575, 741
SfaNI	GCATC	1 cut(s)	676
SfiI	GGCCNNNNNGGCC	1 cut(s)	11
Sfr303I	CCGCGG	1 cut(s)	12
SgrBI	CCGCGG	1 cut(s)	12
SinI	GGWCC	1 cut(s)	99
SmlI	CTYRAG	1 cut(s)	977
SmoI	CTYRAG	1 cut(s)	977
SnaBI	TACGTA	1 cut(s)	911
Sse9I	AATT	6 cut(s)	124, 374, 407, 792, 816, 860
SspMI	CTAG	1 cut(s)	209
StyD4I	CCNGG	1 cut(s)	1015
StyI	CCWWGG	1 cut(s)	998
TaaI	ACNGT	5 cut(s)	178, 334, 667, 703, 1028
TaiI	ACGT	6 cut(s)	198, 322, 358, 589, 859, 913
TaqI	TCGA	2 cut(s)	252, 916
TasI	AATT	6 cut(s)	124, 374, 407, 792, 816, 860
TatI	WGTACW	1 cut(s)	329
TauI	GCSGC	7 cut(s)	8, 11, 14, 52, 55, 168, 188
TfiI	GAWTC	1 cut(s)	835
Tru1I	TTAA	2 cut(s)	597, 819
Tru9I	TTAA	2 cut(s)	597, 819
TseFI	GTSAC	2 cut(s)	117, 800
Tsp45I	GTSAC	2 cut(s)	117, 800
TspDTI	ATGAA	1 cut(s)	711
TspGWI	ACGGA	1 cut(s)	129
VpaK11BI	GGWCC	1 cut(s)	99
XapI	RAATTY	2 cut(s)	374, 407
XceI	RCATGY	2 cut(s)	435, 522
XmnI	GAANNNNTTC	1 cut(s)	561
XspI	CTAG	1 cut(s)	209
ZrmI	AGTACT	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.