Rh2BG376600

Chaperone protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001801
Physical Location & Seq
Forward (+)
53233938 .. 53239810
5873 bp
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UTR
Exon/CDS
Intron
Rh2BG376600.1

Sequence Viewer

Length: 471 bp
ATGGCCGCCGCGGCCCTCCCTCCCTCATCTCCTCACCTTGTCTTCCCGCCGTCGCCGTCGCCGTCGCCGTCTTCTTTCTCTGCTCTCGGCGGGTCCCACGAGAGCTTCGCGTCACTCAATTTGACTACTCGTCCGTGGAACAAGTTGAGCAGGAAACGCCGCGTTGGGGACGGTGTTCGCCGCTTCCGTTATGACATCACTTTAGAATTTTCTGAGGCTATATTTGGAGTGGAAAAAGAATTTGAACTTTCCCATCTGGAAACATGTGAAGTTTGCGCTGGGAGTGGAGCAAAAGTAGGCTCCAAAAGGAGGATATGTTCTACTTGTGGTGGGAGGGGTCAAGTTATGAGAACAGAGCAGACACCTATTGGCTTGTTTTCTCAGGTTTCTGCATGTCTGGATTGTGGTGGAGATGGTGAAGGTATTTCTGAATACTGTCGGAAGTGCTGGAGAAGGACGTGTTCATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

156

Amino Acids

16.88

Weight (kDa)

8.75

Isoelectric Point (pI)

71.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ_CXXCXGXG PF00684 89 - 149 3.4e-13 DnaJ central domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 11, 110, 162
AciI CCGC 7 cut(s) 6, 9, 11, 47, 90, 160, 181
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 206, 239
AfiI CCNNNNNNNGG 2 cut(s) 166, 309
AflIII ACRYGT 2 cut(s) 263, 458
AgsI TTSAA 1 cut(s) 245
AhdI GACNNNNNGTC 1 cut(s) 129
AjiI CACGTC 1 cut(s) 459
AloI GAACNNNNNNTCC 2 cut(s) 301, 333
AluBI AGCT 1 cut(s) 105
AluI AGCT 1 cut(s) 105
AoxI GGCC 2 cut(s) 3, 12
ApoI RAATTY 2 cut(s) 206, 239
AspLEI GCGC 1 cut(s) 278
AspS9I GGNCC 2 cut(s) 13, 93
AsuHPI GGTGA 2 cut(s) 26, 428
AvaII GGWCC 1 cut(s) 93
BauI CACGAG 1 cut(s) 98
BbsI GAAGAC 2 cut(s) 34, 63
BccI CCATC 2 cut(s) 261, 407
BceAI ACGGC 4 cut(s) 34, 40, 46, 52
BglI GCCNNNNNGGC 1 cut(s) 11
BisI GCNGC 5 cut(s) 6, 9, 12, 160, 181
BlsI GCNGC 5 cut(s) 7, 10, 13, 161, 182
Bme18I GGWCC 1 cut(s) 93
BmeRI GACNNNNNGTC 1 cut(s) 129
BmgBI CACGTC 1 cut(s) 459
BmgT120I GGNCC 2 cut(s) 13, 93
BmiI GGNNCC 3 cut(s) 94, 95, 301
BpiI GAAGAC 2 cut(s) 34, 63
BpmI CTGGAG 1 cut(s) 469
BsaJI CCNNGG 2 cut(s) 9, 134
BsaXI ACNNNNNCTCC 4 cut(s) 279, 301, 309, 331
Bsc4I CCNNNNNNNGG 2 cut(s) 166, 309
BseDI CCNNGG 2 cut(s) 9, 134
BseLI CCNNNNNNNGG 2 cut(s) 166, 309
BseMII CTCAG 2 cut(s) 204, 395
BseRI GAGGAG 1 cut(s) 21
BseYI CCCAGC 1 cut(s) 278
Bsh1236I CGCG 3 cut(s) 11, 110, 162
BshFI GGCC 2 cut(s) 5, 14
BslFI GGGAC 2 cut(s) 79, 182
BslI CCNNNNNNNGG 2 cut(s) 166, 309
BsmFI GGGAC 2 cut(s) 79, 182
BsnI GGCC 2 cut(s) 5, 14
BspACI CCGC 7 cut(s) 6, 9, 11, 47, 90, 160, 181
BspANI GGCC 2 cut(s) 5, 14
BspCNI CTCAG 2 cut(s) 205, 394
BspFNI CGCG 3 cut(s) 11, 110, 162
BspLI GGNNCC 3 cut(s) 94, 95, 301
BssECI CCNNGG 2 cut(s) 9, 134
BssSI CACGAG 1 cut(s) 98
Bst2BI CACGAG 1 cut(s) 98
Bst4CI ACNGT 2 cut(s) 173, 437
BstDEI CTNAG 2 cut(s) 213, 381
BstDSI CCRYGG 2 cut(s) 9, 134
BstFNI CGCG 3 cut(s) 11, 110, 162
BstHHI GCGC 1 cut(s) 278
BstMWI GCNNNNNNNGC 2 cut(s) 11, 156
BstNSI RCATGY 2 cut(s) 267, 396
BstUI CGCG 3 cut(s) 11, 110, 162
BstV2I GAAGAC 2 cut(s) 34, 63
BsuRI GGCC 2 cut(s) 5, 14
BtgI CCRYGG 2 cut(s) 9, 134
BtrI CACGTC 1 cut(s) 459
CfoI GCGC 1 cut(s) 278
Cfr13I GGNCC 2 cut(s) 13, 93
Cfr42I CCGCGG 1 cut(s) 12
CseI GACGC 1 cut(s) 99
CviAII CATG 3 cut(s) 264, 393, 465
CviJI RGCY 6 cut(s) 5, 14, 105, 218, 300, 372
CviKI_1 RGCY 6 cut(s) 5, 14, 105, 218, 300, 372
DdeI CTNAG 2 cut(s) 213, 381
DriI GACNNNNNGTC 1 cut(s) 129
EaeI YGGCCR 1 cut(s) 3
Eam1105I GACNNNNNGTC 1 cut(s) 129
Eco47I GGWCC 1 cut(s) 93
EcoO109I RGGNCCY 1 cut(s) 93
FaeI CATG 3 cut(s) 267, 396, 468
FaiI YATR 7 cut(s) 192, 221, 265, 316, 347, 394, 466
FaqI GGGAC 2 cut(s) 79, 182
FatI CATG 3 cut(s) 263, 392, 464
FauI CCCGC 2 cut(s) 54, 83
Fnu4HI GCNGC 5 cut(s) 6, 9, 12, 160, 181
Fsp4HI GCNGC 5 cut(s) 6, 9, 12, 160, 181
GlaI GCGC 1 cut(s) 277
GluI GCNGC 5 cut(s) 6, 9, 12, 160, 181
GsaI CCCAGC 1 cut(s) 282
GsuI CTGGAG 1 cut(s) 469
HaeIII GGCC 2 cut(s) 5, 14
HgaI GACGC 1 cut(s) 99
HhaI GCGC 1 cut(s) 278
Hin1II CATG 3 cut(s) 267, 396, 468
Hin6I GCGC 1 cut(s) 276
HinP1I GCGC 1 cut(s) 276
HphI GGTGA 2 cut(s) 26, 428
Hpy188I TCNGA 3 cut(s) 214, 430, 441
Hpy188III TCNNGA 2 cut(s) 257, 398
Hpy99I CGWCG 3 cut(s) 55, 61, 67
HpyAV CCTTC 2 cut(s) 413, 447
HpyCH4III ACNGT 2 cut(s) 173, 437
HpyCH4IV ACGT 1 cut(s) 458
HpyCH4V TGCA 1 cut(s) 392
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 156
HpyF3I CTNAG 2 cut(s) 213, 381
HpySE526I ACGT 1 cut(s) 458
Hsp92II CATG 3 cut(s) 267, 396, 468
HspAI GCGC 1 cut(s) 276
KflI GGGWCCC 1 cut(s) 93
KspI CCGCGG 1 cut(s) 12
LmnI GCTCC 2 cut(s) 287, 305
LpnPI CCDG 6 cut(s) 136, 242, 264, 368, 383, 433
MaeII ACGT 1 cut(s) 458
MaeIII GTNAC 1 cut(s) 111
MboII GAAGA 2 cut(s) 34, 63
MluCI AATT 3 cut(s) 118, 206, 239
MmeI TCCRAC 1 cut(s) 419
MnlI CCTC 7 cut(s) 26, 30, 34, 42, 208, 303, 327
MseI TTAA 1 cut(s) 469
MspA1I CMGCKG 1 cut(s) 11
MvnI CGCG 3 cut(s) 11, 110, 162
MwoI GCNNNNNNNGC 2 cut(s) 11, 156
NlaIII CATG 3 cut(s) 267, 396, 468
NlaIV GGNNCC 3 cut(s) 94, 95, 301
NmeAIII GCCGAG 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 111
NspI RCATGY 2 cut(s) 267, 396
PciI ACATGT 1 cut(s) 263
PcsI WCGNNNNNNNCGW 3 cut(s) 59, 65, 184
PkrI GCNGC 5 cut(s) 7, 10, 13, 161, 182
PpuMI RGGWCCY 1 cut(s) 93
PscI ACATGT 1 cut(s) 263
Psp5II RGGWCCY 1 cut(s) 93
PspFI CCCAGC 1 cut(s) 278
PspN4I GGNNCC 3 cut(s) 94, 95, 301
PspPI GGNCC 2 cut(s) 13, 93
PspPPI RGGWCCY 1 cut(s) 93
SacII CCGCGG 1 cut(s) 12
SaqAI TTAA 1 cut(s) 469
SatI GCNGC 5 cut(s) 6, 9, 12, 160, 181
Sau96I GGNCC 2 cut(s) 13, 93
SetI ASST 6 cut(s) 39, 107, 367, 387, 424, 461
SfiI GGCCNNNNNGGCC 1 cut(s) 11
Sfr303I CCGCGG 1 cut(s) 12
SgrBI CCGCGG 1 cut(s) 12
SinI GGWCC 1 cut(s) 93
Sse9I AATT 3 cut(s) 118, 206, 239
SsiI CCGC 7 cut(s) 6, 9, 11, 47, 90, 160, 181
TaaI ACNGT 2 cut(s) 173, 437
TaiI ACGT 1 cut(s) 461
TasI AATT 3 cut(s) 118, 206, 239
TauI GCSGC 5 cut(s) 8, 11, 14, 162, 183
Tru1I TTAA 1 cut(s) 469
Tru9I TTAA 1 cut(s) 469
TseFI GTSAC 1 cut(s) 111
Tsp45I GTSAC 1 cut(s) 111
TspDTI ATGAA 1 cut(s) 453
TspGWI ACGGA 2 cut(s) 123, 176
VpaK11BI GGWCC 1 cut(s) 93
XapI RAATTY 2 cut(s) 206, 239
XceI RCATGY 2 cut(s) 267, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.