Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001801

Physical Location & Seq

Genomic Coordinates Forward (+)

55216584 .. 55225411

Gene Structure 8828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG372100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGAGTGGGGGATCTTCAACCTATACGACTAATCCTTTCGATTTATTTGAGACATTTTTTGGGTCAAGCAATCCTTTCCCTGATATGGATACTCGTTTTGAAACACGTCGTCGCAGTACTGTTACTAAGGGTGAAGATATACGTTATGACATCACTTTAGAATTTTCTGAGGCTATATTTGGAGTGGAAAAAGAATTTGAACTTTCCCATCTGGAAACATGTGAAGTTTGCGCTGGGAGTGGGGCAAAAGTAGGCTCCAAAAGGAGGATATGTTCTACTTGTGGTGGGAGGGGTCAAGTTATGAGAACAGAGCAGACACCTTTTGGCTTGTTTTCTCAGGTTTCTGCATGTCCGAAATGTGGTGGAGATGGTGAAGTTATTTCTGAATACTGTCGGAATTGCTCTGGAGAAGGACGTGTTCGTGTTAAGAAAAGTATCAAAGTGAAAGTTCCTCCTGGTGTTAGCAGGGGAAGCATTCTCAGAGTTGCTGGAGAGGGAGATACTGGACCGAGAGGGGGCCCTCCTGGAGATCTTTATGTATATCTTGATGTTGAAGAAATAGAAGGAATTCAAAGAGATGGCATAAATCTCTCTTCAACAGTATCTATAAGCTATCTGGACGCCATATTGGGAACTGTTGTTCAGGTTAAAACAGTGGAAGGATTAACAACACTACAAATTCCACCAGGCACCCAACCAGGTGACATTTTAGTCCTGACCAAAAAAGGAGTACCAAAGCTGAACAAGCCATCAATTCGTGGTGACCATGTGTTTACAATTAAAGTAGCCATACCAAATCGTACCAGTGTCAAGGAACGTGAATTGCTTGAAGAACTTGCTTTACTCAGTAATACTACCGCCAGTCGATCACGTACTCGACCCAAGTCCCAGCCAGTTGCAAATACCCAAACTGATGTGGGAACAGTTGCAGGTGAAACAGTGGAAGAAGATGATCAAAGTGACCCTTGGAAGAAGTTAAAAGACTTTGCGGGGTCTGTTGCCAATGGTGCTTTAAAATGGCTGAGAGACAACCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

345

Amino Acids

37.35

Weight (kDa)

6.27

Isoelectric Point (pI)

37.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ_C	PF01556	47 - 265	2.5e-41	DnaJ C terminal domain
DnaJ_CXXCXGXG	PF00684	74 - 138	1.8e-15	DnaJ central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80030 AT1G80030 AT1G80030 AT1G80030
fragaria_vesca	FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g52160
malus_domestica	MD17G1213500.v1.1
prunus_persica	Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1
pyrus_communis	pycom12419g00100 pycom17g21840
rosa_chinensis	RchiOBHm_Chr2g0134591 RchiOBHm_Chr2g0134611 RchiOBHm_Chr2g0135071
rosa_laevigata	RLG00000019413 RLG00000019439
rosa_multiflora	Rmu_sc0001385.1_g000012 Rmu_sc0004670.1_g000028
rosa_roxburghii	Rroxscaffold_2G00109510 Rroxscaffold_2G00109560 Rroxscaffold_2G00109870 Rroxscaffold_2G00109950
rosa_rugosa	Rorug02G0318700 Rorug02G0322600 Rorug02G0322700
rosa_samantha	Rh2AG372100 Rh2AG374000 Rh2AG374600 Rh2BG376600 Rh2BG379400 Rh2CG355100 Rh2CG358500 Rh2DG394000 Rh2DG396000 Rh4BG169400
rosa_wichuraiana	Rw0G013540 Rw2G030220 Rw2G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	920
AasI	GACNNNNNNGTC	1 cut(s)	710
Acc36I	ACCTGC	1 cut(s)	920
AccB1I	GGYRCC	1 cut(s)	689
AciI	CCGC	2 cut(s)	858, 989
AclWI	GGATC	1 cut(s)	19
AcsI	RAATTY	4 cut(s)	161, 194, 567, 678
AcyI	GRCGYC	1 cut(s)	621
AfaI	GTAC	4 cut(s)	118, 732, 802, 874
AfiI	CCNNNNNNNGG	4 cut(s)	85, 264, 359, 515
AflIII	ACRYGT	3 cut(s)	104, 218, 415
AgsI	TTSAA	7 cut(s)	18, 101, 200, 554, 572, 597, 830
AjiI	CACGTC	2 cut(s)	107, 416
AjnI	CCWGG	4 cut(s)	454, 523, 685, 697
AloI	GAACNNNNNNTCC	4 cut(s)	256, 288, 624, 656
AluBI	AGCT	2 cut(s)	612, 739
AluI	AGCT	2 cut(s)	612, 739
Alw26I	GTCTC	2 cut(s)	44, 1020
AlwI	GGATC	1 cut(s)	19
AoxI	GGCC	1 cut(s)	517
ApaI	GGGCCC	1 cut(s)	521
ApoI	RAATTY	4 cut(s)	161, 194, 567, 678
Asp700I	GAANNNNTTC	1 cut(s)	567
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	3 cut(s)	506, 517, 518
AsuHPI	GGTGA	5 cut(s)	143, 383, 713, 773, 944
AvaII	GGWCC	1 cut(s)	506
BaeGI	GKGCMC	1 cut(s)	521
BanI	GGYRCC	1 cut(s)	689
BanII	GRGCYC	1 cut(s)	521
BccI	CCATC	4 cut(s)	216, 362, 572, 757
BciT130I	CCWGG	4 cut(s)	456, 525, 687, 699
BciVI	GTATCC	1 cut(s)	82
BclI	TGATCA	1 cut(s)	952
BcoDI	GTCTC	2 cut(s)	44, 1020
BfaI	CTAG	1 cut(s)	1036
BfuAI	ACCTGC	1 cut(s)	920
BfuI	GTATCC	1 cut(s)	82
BglII	AGATCT	1 cut(s)	529
BmcAI	AGTACT	1 cut(s)	118
Bme1390I	CCNGG	4 cut(s)	456, 525, 687, 699
Bme18I	GGWCC	1 cut(s)	506
BmgBI	CACGTC	2 cut(s)	107, 416
BmgT120I	GGNCC	3 cut(s)	506, 517, 518
BmiI	GGNNCC	4 cut(s)	256, 518, 519, 691
BmrFI	CCNGG	4 cut(s)	456, 525, 687, 699
BoxI	GACNNNNGTC	1 cut(s)	883
BplI	GAGNNNNNCTC	1 cut(s)	1017
BpmI	CTGGAG	3 cut(s)	426, 510, 546
BsaAI	YACGTR	1 cut(s)	872
BsaHI	GRCGYC	1 cut(s)	621
BsaJI	CCNNGG	1 cut(s)	965
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	4 cut(s)	85, 264, 359, 515
Bse1I	ACTGG	4 cut(s)	508, 804, 861, 893
BseBI	CCWGG	4 cut(s)	456, 525, 687, 699
BseDI	CCNNGG	1 cut(s)	965
BseLI	CCNNNNNNNGG	4 cut(s)	85, 264, 359, 515
BseMII	CTCAG	5 cut(s)	159, 350, 493, 859, 1013
BseNI	ACTGG	4 cut(s)	508, 804, 861, 893
BseSI	GKGCMC	1 cut(s)	521
BseYI	CCCAGC	2 cut(s)	233, 888
BshFI	GGCC	1 cut(s)	519
BshNI	GGYRCC	1 cut(s)	689
BslFI	GGGAC	1 cut(s)	871
BslI	CCNNNNNNNGG	4 cut(s)	85, 264, 359, 515
BsmAI	GTCTC	2 cut(s)	44, 1020
BsmFI	GGGAC	1 cut(s)	871
BsmI	GAATGC	1 cut(s)	474
BsnI	GGCC	1 cut(s)	519
Bsp120I	GGGCCC	1 cut(s)	517
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp143I	GATC	4 cut(s)	11, 529, 866, 952
BspACI	CCGC	2 cut(s)	858, 989
BspANI	GGCC	1 cut(s)	519
BspCNI	CTCAG	5 cut(s)	160, 349, 492, 858, 1014
BspLI	GGNNCC	4 cut(s)	256, 518, 519, 691
BspMI	ACCTGC	1 cut(s)	920
BspPI	GGATC	1 cut(s)	19
BspT107I	GGYRCC	1 cut(s)	689
BsrI	ACTGG	4 cut(s)	508, 804, 861, 893
BssECI	CCNNGG	1 cut(s)	965
BssMI	GATC	4 cut(s)	11, 529, 866, 952
BssNI	GRCGYC	1 cut(s)	621
BssT1I	CCWWGG	1 cut(s)	965
Bst2UI	CCWGG	4 cut(s)	456, 525, 687, 699
Bst4CI	ACNGT	7 cut(s)	121, 392, 601, 637, 655, 925, 940
Bst6I	CTCTTC	1 cut(s)	598
BstACI	GRCGYC	1 cut(s)	621
BstBAI	YACGTR	1 cut(s)	872
BstDEI	CTNAG	6 cut(s)	126, 168, 336, 479, 845, 1022
BstEII	GGTNACC	1 cut(s)	761
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	4 cut(s)	14, 532, 869, 955
BstMAI	GTCTC	2 cut(s)	44, 1020
BstMBI	GATC	4 cut(s)	11, 529, 866, 952
BstMWI	GCNNNNNNNGC	3 cut(s)	471, 745, 1007
BstNI	CCWGG	4 cut(s)	456, 525, 687, 699
BstNSI	RCATGY	2 cut(s)	222, 351
BstPAI	GACNNNNGTC	1 cut(s)	883
BstPI	GGTNACC	1 cut(s)	761
BstSCI	CCNGG	4 cut(s)	454, 523, 685, 697
BstSLI	GKGCMC	1 cut(s)	521
BstX2I	RGATCY	2 cut(s)	11, 529
BstYI	RGATCY	2 cut(s)	11, 529
BsuI	GTATCC	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	519
BtrI	CACGTC	2 cut(s)	107, 416
BtsIMutI	CAGTG	3 cut(s)	660, 811, 945
BveI	ACCTGC	1 cut(s)	920
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	3 cut(s)	506, 517, 518
CseI	GACGC	1 cut(s)	629
CsiI	ACCWGGT	1 cut(s)	697
Csp6I	GTAC	4 cut(s)	117, 731, 801, 873
CviAII	CATG	3 cut(s)	219, 348, 767
CviQI	GTAC	4 cut(s)	117, 731, 801, 873
DdeI	CTNAG	6 cut(s)	126, 168, 336, 479, 845, 1022
DpnI	GATC	4 cut(s)	13, 531, 868, 954
DpnII	GATC	4 cut(s)	11, 529, 866, 952
DraI	TTTAAA	1 cut(s)	1014
DrdI	GACNNNNNNGTC	1 cut(s)	710
DseDI	GACNNNNNNGTC	1 cut(s)	710
Eam1104I	CTCTTC	1 cut(s)	598
EarI	CTCTTC	1 cut(s)	598
Eco130I	CCWWGG	1 cut(s)	965
Eco24I	GRGCYC	1 cut(s)	521
Eco47I	GGWCC	1 cut(s)	506
Eco91I	GGTNACC	1 cut(s)	761
EcoO109I	RGGNCCY	2 cut(s)	517, 518
EcoO65I	GGTNACC	1 cut(s)	761
EcoRI	GAATTC	1 cut(s)	567
EcoRII	CCWGG	4 cut(s)	454, 523, 685, 697
EcoT14I	CCWWGG	1 cut(s)	965
EcoT38I	GRGCYC	1 cut(s)	521
ErhI	CCWWGG	1 cut(s)	965
FaeI	CATG	3 cut(s)	222, 351, 770
FalI	AAGNNNNNCTT	4 cut(s)	58, 90, 949, 981
FaqI	GGGAC	1 cut(s)	871
FatI	CATG	3 cut(s)	218, 347, 766
FauI	CCCGC	1 cut(s)	982
FbaI	TGATCA	1 cut(s)	952
FriOI	GRGCYC	1 cut(s)	521
FspBI	CTAG	1 cut(s)	1036
GlaI	GCGC	1 cut(s)	232
GsaI	CCCAGC	2 cut(s)	237, 892
GsuI	CTGGAG	3 cut(s)	426, 510, 546
HaeIII	GGCC	1 cut(s)	519
HgaI	GACGC	1 cut(s)	629
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	621
Hin1II	CATG	3 cut(s)	222, 351, 770
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HphI	GGTGA	5 cut(s)	143, 383, 713, 773, 944
Hpy166II	GTNNAC	1 cut(s)	774
Hpy188I	TCNGA	5 cut(s)	169, 354, 385, 396, 482
Hpy188III	TCNNGA	5 cut(s)	212, 405, 545, 617, 715
Hpy8I	GTNNAC	1 cut(s)	774
Hpy99I	CGWCG	2 cut(s)	111, 114
HpyAV	CCTTC	3 cut(s)	404, 557, 653
HpyCH4III	ACNGT	7 cut(s)	121, 392, 601, 637, 655, 925, 940
HpyCH4IV	ACGT	5 cut(s)	106, 142, 415, 817, 871
HpyCH4V	TGCA	3 cut(s)	347, 899, 929
HpyF10VI	GCNNNNNNNGC	3 cut(s)	471, 745, 1007
HpyF3I	CTNAG	6 cut(s)	126, 168, 336, 479, 845, 1022
HpySE526I	ACGT	5 cut(s)	106, 142, 415, 817, 871
Hsp92I	GRCGYC	1 cut(s)	621
Hsp92II	CATG	3 cut(s)	222, 351, 770
HspAI	GCGC	1 cut(s)	231
Ksp22I	TGATCA	1 cut(s)	952
Kzo9I	GATC	4 cut(s)	11, 529, 866, 952
LmnI	GCTCC	1 cut(s)	260
MabI	ACCWGGT	1 cut(s)	697
MaeI	CTAG	1 cut(s)	1036
MaeII	ACGT	5 cut(s)	106, 142, 415, 817, 871
MaeIII	GTNAC	4 cut(s)	121, 701, 761, 959
MalI	GATC	4 cut(s)	13, 531, 868, 954
MboI	GATC	4 cut(s)	11, 529, 866, 952
MboII	GAAGA	8 cut(s)	6, 146, 566, 585, 842, 956, 959, 982
MflI	RGATCY	2 cut(s)	11, 529
MhlI	GDGCHC	1 cut(s)	521
MluCI	AATT	8 cut(s)	161, 194, 397, 567, 678, 753, 777, 821
MmeI	TCCRAC	1 cut(s)	374
MnlI	CCTC	7 cut(s)	163, 258, 282, 462, 487, 506, 531
MroXI	GAANNNNTTC	1 cut(s)	567
MseI	TTAA	6 cut(s)	426, 648, 665, 780, 977, 1013
MspR9I	CCNGG	4 cut(s)	456, 525, 687, 699
Mva1269I	GAATGC	1 cut(s)	474
MvaI	CCWGG	4 cut(s)	456, 525, 687, 699
MwoI	GCNNNNNNNGC	3 cut(s)	471, 745, 1007
NdeII	GATC	4 cut(s)	11, 529, 866, 952
NlaIII	CATG	3 cut(s)	222, 351, 770
NlaIV	GGNNCC	4 cut(s)	256, 518, 519, 691
NmuCI	GTSAC	3 cut(s)	701, 761, 959
NspI	RCATGY	2 cut(s)	222, 351
PaqCI	CACCTGC	1 cut(s)	920
PciI	ACATGT	1 cut(s)	218
PctI	GAATGC	1 cut(s)	474
PdmI	GAANNNNTTC	1 cut(s)	567
PfoI	TCCNGGA	1 cut(s)	523
Ppu21I	YACGTR	1 cut(s)	872
PscI	ACATGT	1 cut(s)	218
PshAI	GACNNNNGTC	1 cut(s)	883
Psp6I	CCWGG	4 cut(s)	454, 523, 685, 697
PspEI	GGTNACC	1 cut(s)	761
PspFI	CCCAGC	2 cut(s)	233, 888
PspGI	CCWGG	4 cut(s)	454, 523, 685, 697
PspN4I	GGNNCC	4 cut(s)	256, 518, 519, 691
PspOMI	GGGCCC	1 cut(s)	517
PspPI	GGNCC	3 cut(s)	506, 517, 518
PsrI	GAACNNNNNNTAC	2 cut(s)	825, 857
PsuI	RGATCY	2 cut(s)	11, 529
RsaI	GTAC	4 cut(s)	118, 732, 802, 874
RsaNI	GTAC	4 cut(s)	117, 731, 801, 873
SaqAI	TTAA	6 cut(s)	426, 648, 665, 780, 977, 1013
Sau3AI	GATC	4 cut(s)	11, 529, 866, 952
Sau96I	GGNCC	3 cut(s)	506, 517, 518
ScaI	AGTACT	1 cut(s)	118
ScrFI	CCNGG	4 cut(s)	456, 525, 687, 699
SduI	GDGCHC	1 cut(s)	521
SexAI	ACCWGGT	1 cut(s)	697
SinI	GGWCC	1 cut(s)	506
Sse9I	AATT	8 cut(s)	161, 194, 397, 567, 678, 753, 777, 821
SsiI	CCGC	2 cut(s)	858, 989
SspMI	CTAG	1 cut(s)	1036
StyD4I	CCNGG	4 cut(s)	454, 523, 685, 697
StyI	CCWWGG	1 cut(s)	965
TaaI	ACNGT	7 cut(s)	121, 392, 601, 637, 655, 925, 940
TaiI	ACGT	5 cut(s)	109, 145, 418, 820, 874
TaqI	TCGA	3 cut(s)	39, 865, 877
TaqII	GACCGA	1 cut(s)	523
TasI	AATT	8 cut(s)	161, 194, 397, 567, 678, 753, 777, 821
TatI	WGTACW	1 cut(s)	116
Tru1I	TTAA	6 cut(s)	426, 648, 665, 780, 977, 1013
Tru9I	TTAA	6 cut(s)	426, 648, 665, 780, 977, 1013
TscAI	CASTG	3 cut(s)	660, 811, 945
TseFI	GTSAC	3 cut(s)	701, 761, 959
Tsp45I	GTSAC	3 cut(s)	701, 761, 959
TspRI	CASTG	3 cut(s)	660, 811, 945
VpaK11BI	GGWCC	1 cut(s)	506
XapI	RAATTY	4 cut(s)	161, 194, 567, 678
XceI	RCATGY	2 cut(s)	222, 351
XmnI	GAANNNNTTC	1 cut(s)	567
XspI	CTAG	1 cut(s)	1036
ZrmI	AGTACT	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.