Rroxscaffold_2G00109950

Chaperone protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
34198206 .. 34198572
367 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00109950.1

Sequence Viewer

Length: 231 bp
ATGGCTAAGGGCTACTTTGAAGTTTATAATGCAACCATAGAGATGAGGCCGGTTTCTGCATGTCTGGATTGTGGTGGAGATGGTGAAGTTATTTCTGAATACTGTCGGAAGTGCTCTGGAGAAGGACGTGTTCGTGTTAAGAAAAGTATCAAAGTGAAAGTTCCTCCTCGTGTTAGCAGGGGAAGTATTCTTAGAGTTGTTGGAGAGGGAGGTACTGGACCGAGAGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

76

Amino Acids

8.15

Weight (kDa)

9.46

Isoelectric Point (pI)

30.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 27
AfaI GTAC 1 cut(s) 214
AflIII ACRYGT 1 cut(s) 127
AgsI TTSAA 1 cut(s) 20
AjiI CACGTC 1 cut(s) 128
Alw21I GWGCWC 1 cut(s) 116
AoxI GGCC 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 95
AvaII GGWCC 1 cut(s) 218
BauI CACGAG 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 116
BccI CCATC 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 218
BmgBI CACGTC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 218
BpmI CTGGAG 1 cut(s) 138
Bpu10I CCTNAGC 1 cut(s) 6
Bse118I RCCGGY 1 cut(s) 49
Bse1I ACTGG 1 cut(s) 220
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 1 cut(s) 156
BshFI GGCC 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 116
BsiSI CCGG 1 cut(s) 50
BsnI GGCC 1 cut(s) 49
Bsp1286I GDGCHC 1 cut(s) 116
BspANI GGCC 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 49
BsrI ACTGG 1 cut(s) 220
BssAI RCCGGY 1 cut(s) 49
BssSI CACGAG 1 cut(s) 168
Bst2BI CACGAG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 104
BstDEI CTNAG 2 cut(s) 6, 191
BstNSI RCATGY 1 cut(s) 63
BsuRI GGCC 1 cut(s) 49
BtrI CACGTC 1 cut(s) 128
Cfr10I RCCGGY 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 213
CviAII CATG 1 cut(s) 60
CviJI RGCY 3 cut(s) 5, 12, 49
CviKI_1 RGCY 3 cut(s) 5, 12, 49
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 2 cut(s) 6, 191
Eco47I GGWCC 1 cut(s) 218
FaeI CATG 1 cut(s) 63
FaiI YATR 3 cut(s) 27, 38, 61
FalI AAGNNNNNCTT 1 cut(s) 31
FatI CATG 1 cut(s) 59
GsuI CTGGAG 1 cut(s) 138
HaeIII GGCC 1 cut(s) 49
HapII CCGG 1 cut(s) 50
Hin1II CATG 1 cut(s) 63
HpaII CCGG 1 cut(s) 50
HphI GGTGA 1 cut(s) 95
Hpy188I TCNGA 2 cut(s) 97, 108
Hpy188III TCNNGA 2 cut(s) 65, 117
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 2 cut(s) 32, 59
HpyF3I CTNAG 2 cut(s) 6, 191
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 1 cut(s) 63
LpnPI CCDG 5 cut(s) 50, 63, 102, 163, 201
MaeII ACGT 1 cut(s) 127
MhlI GDGCHC 1 cut(s) 116
MmeI TCCRAC 2 cut(s) 86, 181
MnlI CCTC 6 cut(s) 39, 174, 177, 199, 203, 218
MseI TTAA 1 cut(s) 138
MslI CAYNNNNRTG 1 cut(s) 41
MspI CCGG 1 cut(s) 50
NlaIII CATG 1 cut(s) 63
NspI RCATGY 1 cut(s) 63
PsiI TTATAA 1 cut(s) 27
PspPI GGNCC 1 cut(s) 218
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 1 cut(s) 138
Sau96I GGNCC 1 cut(s) 218
SduI GDGCHC 1 cut(s) 116
SetI ASST 2 cut(s) 130, 214
SgeI CNNG 9 cut(s) 62, 72, 77, 129, 140, 146, 180, 182, 190
SinI GGWCC 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 41
TaaI ACNGT 1 cut(s) 104
TaiI ACGT 1 cut(s) 130
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
VpaK11BI GGWCC 1 cut(s) 218
XceI RCATGY 1 cut(s) 63
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.