Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001801

Physical Location & Seq

Genomic Coordinates Reverse (-)

55895674 .. 55900754

Gene Structure 5081 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG374600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAGAACAGAGCAGACACCTATTGGCTTGTTTTCTCAGGTTTCTGCATGTCTGGATTGTGGTGGAGATGGTGAAGTTAGTTCTGAATACTGTCGGAAGTGCTCTGGAGAAGGACGTGTTCGTGTTAAGAAAAGTATCAAAGTGAAAGTTCCTCCTCGTGTTAGCAGGGGAAATGGCATAAATCTCTCTTCAACAGTATCTCTAAGCTATCTGGATGCCATATTGGGAACTGTTATTCAAGTAAAGTTTTCATTGGATTATTTCGTGCTCCCATTTTATTTCCTGACCAAAAAAGGAGTACCAAAGCTGAACAAGCCATCAATTTGTGATGACCATGTGTTTACAAGTAAAGTAGCCATAGCGAATCGTACCAGCGTCAAGGAACGTGAATTGCTTGAAGAACTTGCTTTACTCAGTAATACTACCGCCAGCCGTTTACGTACTCGACCCAAGTCCCAGCCAGTTGCAAATACTCAAACTGAGATGGGAACAGTTGCAGACGAAACAGTGGAAGAAGACGATCAAAGTGACCCATGGAAGAAGTTAAAAGACTTTGCGAGGTCTGCTGCAAATGGTGCTTTAAAATGGCTGAGAGACAACCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

201

Amino Acids

22.22

Weight (kDa)

9.08

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80030 AT1G80030 AT1G80030 AT1G80030
fragaria_vesca	FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g52160
malus_domestica	MD17G1213500.v1.1
prunus_persica	Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1
pyrus_communis	pycom12419g00100 pycom17g21840
rosa_chinensis	RchiOBHm_Chr2g0134591 RchiOBHm_Chr2g0134611 RchiOBHm_Chr2g0135071
rosa_laevigata	RLG00000019413 RLG00000019439
rosa_multiflora	Rmu_sc0001385.1_g000012 Rmu_sc0004670.1_g000028
rosa_roxburghii	Rroxscaffold_2G00109510 Rroxscaffold_2G00109560 Rroxscaffold_2G00109870 Rroxscaffold_2G00109950
rosa_rugosa	Rorug02G0318700 Rorug02G0322600 Rorug02G0322700
rosa_samantha	Rh2AG372100 Rh2AG374000 Rh2AG374600 Rh2BG376600 Rh2BG379400 Rh2CG355100 Rh2CG358500 Rh2DG394000 Rh2DG396000 Rh4BG169400
rosa_wichuraiana	Rw0G013540 Rw2G030220 Rw2G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	426
AfaI	GTAC	3 cut(s)	300, 370, 442
AflIII	ACRYGT	1 cut(s)	115
AgsI	TTSAA	3 cut(s)	192, 239, 398
AjiI	CACGTC	1 cut(s)	116
AluBI	AGCT	2 cut(s)	207, 307
AluI	AGCT	2 cut(s)	207, 307
Alw21I	GWGCWC	2 cut(s)	104, 270
Alw26I	GTCTC	1 cut(s)	588
ApeKI	GCWGC	1 cut(s)	566
AsuHPI	GGTGA	1 cut(s)	83
BauI	CACGAG	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	522
Bbv12I	GWGCWC	2 cut(s)	104, 270
BbvI	GCAGC	1 cut(s)	553
BccI	CCATC	3 cut(s)	62, 325, 478
BceAI	ACGGC	1 cut(s)	417
BcoDI	GTCTC	1 cut(s)	588
BfaI	CTAG	1 cut(s)	604
BisI	GCNGC	1 cut(s)	567
BlsI	GCNGC	1 cut(s)	568
BmgBI	CACGTC	1 cut(s)	116
BmsI	GCATC	1 cut(s)	205
BoxI	GACNNNNGTC	1 cut(s)	451
BpiI	GAAGAC	1 cut(s)	522
BplI	GAGNNNNNCTC	1 cut(s)	585
BpmI	CTGGAG	1 cut(s)	126
BsaAI	YACGTR	1 cut(s)	440
BsaJI	CCNNGG	1 cut(s)	533
Bse1I	ACTGG	1 cut(s)	461
BseDI	CCNNGG	1 cut(s)	533
BseGI	GGATG	1 cut(s)	220
BseMII	CTCAG	4 cut(s)	50, 427, 471, 581
BseNI	ACTGG	1 cut(s)	461
BseRI	GAGGAG	1 cut(s)	144
BseXI	GCAGC	1 cut(s)	553
BseYI	CCCAGC	1 cut(s)	456
BsiHKAI	GWGCWC	2 cut(s)	104, 270
BslFI	GGGAC	1 cut(s)	439
BsmAI	GTCTC	1 cut(s)	588
BsmFI	GGGAC	1 cut(s)	439
Bsp1286I	GDGCHC	2 cut(s)	104, 270
Bsp143I	GATC	1 cut(s)	520
Bsp19I	CCATGG	1 cut(s)	533
BspACI	CCGC	1 cut(s)	426
BspCNI	CTCAG	4 cut(s)	49, 426, 472, 582
BsrI	ACTGG	1 cut(s)	461
BssECI	CCNNGG	1 cut(s)	533
BssMI	GATC	1 cut(s)	520
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	533
Bst2BI	CACGAG	1 cut(s)	156
Bst4CI	ACNGT	5 cut(s)	92, 196, 232, 493, 508
Bst6I	CTCTTC	1 cut(s)	193
BstAPI	GCANNNNNTGC	1 cut(s)	575
BstBAI	YACGTR	1 cut(s)	440
BstC8I	GCNNGC	1 cut(s)	430
BstDEI	CTNAG	5 cut(s)	36, 203, 413, 480, 590
BstDSI	CCRYGG	1 cut(s)	533
BstF5I	GGATG	1 cut(s)	220
BstKTI	GATC	1 cut(s)	523
BstMAI	GTCTC	1 cut(s)	588
BstMBI	GATC	1 cut(s)	520
BstMWI	GCNNNNNNNGC	3 cut(s)	313, 563, 575
BstNSI	RCATGY	1 cut(s)	51
BstPAI	GACNNNNGTC	1 cut(s)	451
BstSNI	TACGTA	1 cut(s)	440
BstV1I	GCAGC	1 cut(s)	553
BstV2I	GAAGAC	1 cut(s)	522
BtgI	CCRYGG	1 cut(s)	533
BtrI	CACGTC	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	220
BtsIMutI	CAGTG	1 cut(s)	513
Cac8I	GCNNGC	1 cut(s)	430
CseI	GACGC	1 cut(s)	364
Csp6I	GTAC	3 cut(s)	299, 369, 441
CviAII	CATG	3 cut(s)	48, 335, 534
CviJI	RGCY	8 cut(s)	27, 207, 307, 316, 356, 432, 460, 589
CviKI_1	RGCY	8 cut(s)	27, 207, 307, 316, 356, 432, 460, 589
CviQI	GTAC	3 cut(s)	299, 369, 441
DdeI	CTNAG	5 cut(s)	36, 203, 413, 480, 590
DpnI	GATC	1 cut(s)	522
DpnII	GATC	1 cut(s)	520
DraI	TTTAAA	1 cut(s)	582
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Eco105I	TACGTA	1 cut(s)	440
Eco130I	CCWWGG	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	533
ErhI	CCWWGG	1 cut(s)	533
FaeI	CATG	3 cut(s)	51, 338, 537
FaiI	YATR	6 cut(s)	49, 179, 221, 336, 359, 535
FaqI	GGGAC	1 cut(s)	439
FatI	CATG	3 cut(s)	47, 334, 533
Fnu4HI	GCNGC	1 cut(s)	567
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	1 cut(s)	567
FspBI	CTAG	1 cut(s)	604
GluI	GCNGC	1 cut(s)	567
GsaI	CCCAGC	1 cut(s)	460
GsuI	CTGGAG	1 cut(s)	126
HgaI	GACGC	1 cut(s)	364
Hin1II	CATG	3 cut(s)	51, 338, 537
HinfI	GANTC	1 cut(s)	364
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	2 cut(s)	342, 437
Hpy188I	TCNGA	2 cut(s)	85, 96
Hpy188III	TCNNGA	4 cut(s)	53, 105, 212, 283
Hpy8I	GTNNAC	2 cut(s)	342, 437
HpyAV	CCTTC	1 cut(s)	104
HpyCH4III	ACNGT	5 cut(s)	92, 196, 232, 493, 508
HpyCH4IV	ACGT	3 cut(s)	115, 385, 439
HpyCH4V	TGCA	4 cut(s)	47, 467, 497, 569
HpyF10VI	GCNNNNNNNGC	3 cut(s)	313, 563, 575
HpyF3I	CTNAG	5 cut(s)	36, 203, 413, 480, 590
HpySE526I	ACGT	3 cut(s)	115, 385, 439
Hsp92II	CATG	3 cut(s)	51, 338, 537
Kzo9I	GATC	1 cut(s)	520
LmnI	GCTCC	1 cut(s)	273
Lsp1109I	GCAGC	1 cut(s)	553
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	604
MaeII	ACGT	3 cut(s)	115, 385, 439
MaeIII	GTNAC	1 cut(s)	527
MalI	GATC	1 cut(s)	522
MboI	GATC	1 cut(s)	520
MboII	GAAGA	5 cut(s)	180, 410, 524, 527, 550
MhlI	GDGCHC	2 cut(s)	104, 270
MluCI	AATT	2 cut(s)	321, 389
MmeI	TCCRAC	1 cut(s)	74
MnlI	CCTC	3 cut(s)	162, 165, 552
MseI	TTAA	3 cut(s)	126, 545, 581
MwoI	GCNNNNNNNGC	3 cut(s)	313, 563, 575
NcoI	CCATGG	1 cut(s)	533
NdeII	GATC	1 cut(s)	520
NlaIII	CATG	3 cut(s)	51, 338, 537
NmuCI	GTSAC	1 cut(s)	527
NspI	RCATGY	1 cut(s)	51
PfeI	GAWTC	1 cut(s)	364
PkrI	GCNGC	1 cut(s)	568
Ppu21I	YACGTR	1 cut(s)	440
PshAI	GACNNNNGTC	1 cut(s)	451
PspFI	CCCAGC	1 cut(s)	456
PsrI	GAACNNNNNNTAC	2 cut(s)	393, 425
RsaI	GTAC	3 cut(s)	300, 370, 442
RsaNI	GTAC	3 cut(s)	299, 369, 441
SaqAI	TTAA	3 cut(s)	126, 545, 581
SatI	GCNGC	1 cut(s)	567
Sau3AI	GATC	1 cut(s)	520
SduI	GDGCHC	2 cut(s)	104, 270
SetI	ASST	9 cut(s)	22, 42, 118, 209, 309, 388, 442, 563, 603
SfaNI	GCATC	1 cut(s)	205
SnaBI	TACGTA	1 cut(s)	440
Sse9I	AATT	2 cut(s)	321, 389
SsiI	CCGC	1 cut(s)	426
SspMI	CTAG	1 cut(s)	604
StyI	CCWWGG	1 cut(s)	533
TaaI	ACNGT	5 cut(s)	92, 196, 232, 493, 508
TaiI	ACGT	3 cut(s)	118, 388, 442
TaqI	TCGA	1 cut(s)	445
TasI	AATT	2 cut(s)	321, 389
TfiI	GAWTC	1 cut(s)	364
Tru1I	TTAA	3 cut(s)	126, 545, 581
Tru9I	TTAA	3 cut(s)	126, 545, 581
TscAI	CASTG	1 cut(s)	513
TseFI	GTSAC	1 cut(s)	527
TseI	GCWGC	1 cut(s)	566
Tsp45I	GTSAC	1 cut(s)	527
TspDTI	ATGAA	1 cut(s)	240
TspRI	CASTG	1 cut(s)	513
XceI	RCATGY	1 cut(s)	51
XspI	CTAG	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.