Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004670.1

Orthogroup ID

OG0001801

Physical Location & Seq

Genomic Coordinates Forward (+)

147611 .. 147971

Gene Structure 361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004670.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

atgggctactttgaagtttataacgcaaccatagagatgaggccggtttctgcatgtctggattgtggtggagatggtgaagttatttctgaatactgtcggaagtgctctggagaaggacgtgttcgtgttaagaaaagtatcaaagtgaaagttcctcctcgtgttagcaggggaagtattcttagagttgctggagagggaggtgctggaccgagagggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

74

Amino Acids

7.89

Weight (kDa)

9.3

Isoelectric Point (pI)

32.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80030 AT1G80030 AT1G80030 AT1G80030
fragaria_vesca	FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g52160
malus_domestica	MD17G1213500.v1.1
prunus_persica	Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1
pyrus_communis	pycom12419g00100 pycom17g21840
rosa_chinensis	RchiOBHm_Chr2g0134591 RchiOBHm_Chr2g0134611 RchiOBHm_Chr2g0135071
rosa_laevigata	RLG00000019413 RLG00000019439
rosa_multiflora	Rmu_sc0001385.1_g000012 Rmu_sc0004670.1_g000028
rosa_roxburghii	Rroxscaffold_2G00109510 Rroxscaffold_2G00109560 Rroxscaffold_2G00109870 Rroxscaffold_2G00109950
rosa_rugosa	Rorug02G0318700 Rorug02G0322600 Rorug02G0322700
rosa_samantha	Rh2AG372100 Rh2AG374000 Rh2AG374600 Rh2BG376600 Rh2BG379400 Rh2CG355100 Rh2CG358500 Rh2DG394000 Rh2DG396000 Rh4BG169400
rosa_wichuraiana	Rw0G013540 Rw2G030220 Rw2G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
AflIII	ACRYGT	1 cut(s)	121
AgsI	TTSAA	1 cut(s)	14
AjiI	CACGTC	1 cut(s)	122
Alw21I	GWGCWC	1 cut(s)	110
AoxI	GGCC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	212
AsuHPI	GGTGA	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	212
BauI	CACGAG	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	110
BccI	CCATC	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	212
BmgBI	CACGTC	1 cut(s)	122
BmgT120I	GGNCC	1 cut(s)	212
BpmI	CTGGAG	2 cut(s)	132, 216
Bse118I	RCCGGY	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	150
BshFI	GGCC	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	44
BsnI	GGCC	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	110
BspANI	GGCC	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssSI	CACGAG	1 cut(s)	162
Bst2BI	CACGAG	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	98
BstDEI	CTNAG	1 cut(s)	185
BstNSI	RCATGY	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	43
BtrI	CACGTC	1 cut(s)	122
Cfr10I	RCCGGY	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	212
CviAII	CATG	1 cut(s)	54
CviJI	RGCY	2 cut(s)	6, 43
CviKI_1	RGCY	2 cut(s)	6, 43
DdeI	CTNAG	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	212
FaeI	CATG	1 cut(s)	57
FaiI	YATR	3 cut(s)	21, 32, 55
FatI	CATG	1 cut(s)	53
GsuI	CTGGAG	2 cut(s)	132, 216
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	1 cut(s)	44
Hin1II	CATG	1 cut(s)	57
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	1 cut(s)	89
Hpy188I	TCNGA	2 cut(s)	91, 102
Hpy188III	TCNNGA	2 cut(s)	59, 111
HpyAV	CCTTC	1 cut(s)	110
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	121
HpyCH4V	TGCA	1 cut(s)	53
HpyF3I	CTNAG	1 cut(s)	185
HpySE526I	ACGT	1 cut(s)	121
Hsp92II	CATG	1 cut(s)	57
LpnPI	CCDG	6 cut(s)	44, 57, 96, 157, 180, 195
MaeII	ACGT	1 cut(s)	121
MhlI	GDGCHC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	80
MnlI	CCTC	6 cut(s)	33, 168, 171, 193, 197, 212
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	1 cut(s)	35
MspI	CCGG	1 cut(s)	44
NlaIII	CATG	1 cut(s)	57
NspI	RCATGY	1 cut(s)	57
PsiI	TTATAA	1 cut(s)	21
PspPI	GGNCC	1 cut(s)	212
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	132
Sau96I	GGNCC	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	110
SetI	ASST	2 cut(s)	124, 208
SinI	GGWCC	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	35
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	124
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
VpaK11BI	GGWCC	1 cut(s)	212
XceI	RCATGY	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.