Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001801

Physical Location & Seq

Genomic Coordinates Reverse (-)

55703430 .. 55707869

Gene Structure 4440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG374000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGTTCAGTTATGACATCACTTTAGAATTTTCTGAGGCTATATTTGGAGTGGAAAAAGAATTTGAACTTTCCCATCTGGAAACATGTGAAGTTTGCGCTGGGAGTGGAGCAAAAGTAGGCTCCAAAAGGAGGATATGTTCTACTTGTGGTGGGAGGGGTCAAGTTATGAGAACAGAGCAGACACCTATTGGCTTGTTTTCTCAGGTTTCTGCATGTCTGGATTGTGGTGGAGATGGTGAAGTTATTTCTGAATACTGTCGGAAGTGCTCTGGAGAAGGACGTGTTCATGTTAAGAAAAGTATCAAAGTGAAAATTCCTCATCGTGTTAGCAGGGGAAGTATTCTTAGAGTTGCTGGAGAGGGAGGTGCTGGACCGAGAGGCGTCAAGGAATGTGAATTGCTTGAAGAACTTGCTTTACTCAGTAATACTGCCGCCAGCCGTTTACGTACTCGACCCAAGTCCCAGCCAGTTGGTACGTGCTCGCTTTTATCATTTGAGGATGTGCTCTCTGCTTGTGCATATCTGTGCACACTCATCTTGAGAGATCTTCAAGTCCCTTGGTCAACGTATTTGAATTTTGAAACTGAGGGTGAATGGATATTGACGATATGCATGACAGAACATTTCTTTCAGATTAGGTGTATAGCTTTATCTGACTTGAATTTGTCCTTTCATTCTACAGCAAATACTCAAACTGAGATGGGAACAGTTGCAGACGAAACAGTGGAAGAAGACGATCAAAGTGACCCATGGAAGAAGTTAAAAGACTTTGCGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

259

Amino Acids

28.54

Weight (kDa)

5.39

Isoelectric Point (pI)

34.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ_C	PF01556	3 - 133	3.4e-08	DnaJ C terminal domain
DnaJ_CXXCXGXG	PF00684	29 - 93	8.9e-15	DnaJ central domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80030 AT1G80030 AT1G80030 AT1G80030
fragaria_vesca	FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g29530 FvH4_6g52160
malus_domestica	MD17G1213500.v1.1
prunus_persica	Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1 Prupe.3G088900_v2.0.a1
pyrus_communis	pycom12419g00100 pycom17g21840
rosa_chinensis	RchiOBHm_Chr2g0134591 RchiOBHm_Chr2g0134611 RchiOBHm_Chr2g0135071
rosa_laevigata	RLG00000019413 RLG00000019439
rosa_multiflora	Rmu_sc0001385.1_g000012 Rmu_sc0004670.1_g000028
rosa_roxburghii	Rroxscaffold_2G00109510 Rroxscaffold_2G00109560 Rroxscaffold_2G00109870 Rroxscaffold_2G00109950
rosa_rugosa	Rorug02G0318700 Rorug02G0322600 Rorug02G0322700
rosa_samantha	Rh2AG372100 Rh2AG374000 Rh2AG374600 Rh2BG376600 Rh2BG379400 Rh2CG355100 Rh2CG358500 Rh2DG394000 Rh2DG396000 Rh4BG169400
rosa_wichuraiana	Rw0G013540 Rw2G030220 Rw2G030490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	432
AcsI	RAATTY	5 cut(s)	26, 59, 312, 574, 661
AcyI	GRCGYC	1 cut(s)	381
AfaI	GTAC	2 cut(s)	448, 475
AfiI	CCNNNNNNNGG	1 cut(s)	129
AflIII	ACRYGT	2 cut(s)	83, 280
AgsI	TTSAA	6 cut(s)	65, 404, 551, 574, 581, 661
AjiI	CACGTC	1 cut(s)	281
AloI	GAACNNNNNNTCC	2 cut(s)	121, 153
AluBI	AGCT	1 cut(s)	647
AluI	AGCT	1 cut(s)	647
Alw21I	GWGCWC	4 cut(s)	269, 482, 507, 530
Alw44I	GTGCAC	1 cut(s)	526
ApaLI	GTGCAC	1 cut(s)	526
ApoI	RAATTY	5 cut(s)	26, 59, 312, 574, 661
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	371
AsuHPI	GGTGA	2 cut(s)	248, 602
AvaII	GGWCC	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	530
BbsI	GAAGAC	1 cut(s)	738
Bbv12I	GWGCWC	4 cut(s)	269, 482, 507, 530
BccI	CCATC	3 cut(s)	81, 227, 694
BceAI	ACGGC	1 cut(s)	423
BfmI	CTRYAG	1 cut(s)	678
BglII	AGATCT	1 cut(s)	544
BisI	GCNGC	1 cut(s)	432
BlsI	GCNGC	1 cut(s)	433
Bme18I	GGWCC	1 cut(s)	371
BmgBI	CACGTC	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	1 cut(s)	121
BoxI	GACNNNNGTC	1 cut(s)	457
BpiI	GAAGAC	1 cut(s)	738
BpmI	CTGGAG	2 cut(s)	291, 375
BpuEI	CTTGAG	1 cut(s)	559
BsaAI	YACGTR	2 cut(s)	446, 477
BsaHI	GRCGYC	1 cut(s)	381
BsaJI	CCNNGG	2 cut(s)	557, 749
BsaXI	ACNNNNNCTCC	4 cut(s)	99, 121, 129, 151
Bsc4I	CCNNNNNNNGG	1 cut(s)	129
Bse1I	ACTGG	1 cut(s)	467
BseDI	CCNNGG	2 cut(s)	557, 749
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	1 cut(s)	129
BseMII	CTCAG	5 cut(s)	24, 215, 433, 576, 687
BseNI	ACTGG	1 cut(s)	467
BseSI	GKGCMC	1 cut(s)	530
BseYI	CCCAGC	2 cut(s)	98, 462
BsiHKAI	GWGCWC	4 cut(s)	269, 482, 507, 530
BslFI	GGGAC	2 cut(s)	445, 539
BslI	CCNNNNNNNGG	1 cut(s)	129
BsmFI	GGGAC	2 cut(s)	445, 539
Bsp1286I	GDGCHC	4 cut(s)	269, 482, 507, 530
Bsp143I	GATC	2 cut(s)	544, 736
Bsp19I	CCATGG	1 cut(s)	749
BspACI	CCGC	1 cut(s)	432
BspCNI	CTCAG	5 cut(s)	25, 214, 432, 577, 688
BspLI	GGNNCC	1 cut(s)	121
BsrI	ACTGG	1 cut(s)	467
BssECI	CCNNGG	2 cut(s)	557, 749
BssMI	GATC	2 cut(s)	544, 736
BssNI	GRCGYC	1 cut(s)	381
BssT1I	CCWWGG	2 cut(s)	557, 749
Bst4CI	ACNGT	3 cut(s)	257, 709, 724
BstACI	GRCGYC	1 cut(s)	381
BstBAI	YACGTR	2 cut(s)	446, 477
BstC8I	GCNNGC	2 cut(s)	436, 482
BstDEI	CTNAG	6 cut(s)	33, 201, 344, 419, 585, 696
BstDSI	CCRYGG	1 cut(s)	749
BstF5I	GGATG	1 cut(s)	505
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	2 cut(s)	547, 739
BstMBI	GATC	2 cut(s)	544, 736
BstNSI	RCATGY	2 cut(s)	87, 216
BstPAI	GACNNNNGTC	1 cut(s)	457
BstSFI	CTRYAG	1 cut(s)	678
BstSLI	GKGCMC	1 cut(s)	530
BstSNI	TACGTA	1 cut(s)	446
BstV2I	GAAGAC	1 cut(s)	738
BstX2I	RGATCY	1 cut(s)	544
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	544
BtgI	CCRYGG	1 cut(s)	749
BtrI	CACGTC	1 cut(s)	281
BtsCI	GGATG	1 cut(s)	505
BtsIMutI	CAGTG	1 cut(s)	729
Cac8I	GCNNGC	2 cut(s)	436, 482
CfoI	GCGC	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	371
CseI	GACGC	1 cut(s)	370
Csp6I	GTAC	2 cut(s)	447, 474
CviAII	CATG	5 cut(s)	84, 213, 287, 613, 750
CviJI	RGCY	6 cut(s)	38, 120, 192, 438, 466, 647
CviKI_1	RGCY	6 cut(s)	38, 120, 192, 438, 466, 647
CviQI	GTAC	2 cut(s)	447, 474
DdeI	CTNAG	6 cut(s)	33, 201, 344, 419, 585, 696
DpnI	GATC	2 cut(s)	546, 738
DpnII	GATC	2 cut(s)	544, 736
Eco105I	TACGTA	1 cut(s)	446
Eco130I	CCWWGG	2 cut(s)	557, 749
Eco47I	GGWCC	1 cut(s)	371
EcoT14I	CCWWGG	2 cut(s)	557, 749
EcoT22I	ATGCAT	1 cut(s)	614
ErhI	CCWWGG	2 cut(s)	557, 749
FaeI	CATG	5 cut(s)	87, 216, 290, 616, 753
FaqI	GGGAC	2 cut(s)	445, 539
FatI	CATG	5 cut(s)	83, 212, 286, 612, 749
Fnu4HI	GCNGC	1 cut(s)	432
FokI	GGATG	1 cut(s)	512
Fsp4HI	GCNGC	1 cut(s)	432
GlaI	GCGC	1 cut(s)	97
GluI	GCNGC	1 cut(s)	432
GsaI	CCCAGC	2 cut(s)	102, 466
GsuI	CTGGAG	2 cut(s)	291, 375
HgaI	GACGC	1 cut(s)	370
HhaI	GCGC	1 cut(s)	98
Hin1I	GRCGYC	1 cut(s)	381
Hin1II	CATG	5 cut(s)	87, 216, 290, 616, 753
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HincII	GTYRAC	1 cut(s)	564
HindII	GTYRAC	1 cut(s)	564
HphI	GGTGA	2 cut(s)	248, 602
Hpy166II	GTNNAC	3 cut(s)	443, 528, 564
Hpy188I	TCNGA	5 cut(s)	34, 250, 261, 633, 655
Hpy188III	TCNNGA	4 cut(s)	77, 218, 270, 538
Hpy8I	GTNNAC	3 cut(s)	443, 528, 564
HpyAV	CCTTC	1 cut(s)	269
HpyCH4III	ACNGT	3 cut(s)	257, 709, 724
HpyCH4IV	ACGT	4 cut(s)	280, 445, 476, 566
HpyCH4V	TGCA	5 cut(s)	212, 518, 528, 612, 713
HpyF3I	CTNAG	6 cut(s)	33, 201, 344, 419, 585, 696
HpySE526I	ACGT	4 cut(s)	280, 445, 476, 566
Hsp92I	GRCGYC	1 cut(s)	381
Hsp92II	CATG	5 cut(s)	87, 216, 290, 616, 753
HspAI	GCGC	1 cut(s)	96
Kzo9I	GATC	2 cut(s)	544, 736
LmnI	GCTCC	2 cut(s)	107, 125
MaeII	ACGT	4 cut(s)	280, 445, 476, 566
MaeIII	GTNAC	1 cut(s)	743
MalI	GATC	2 cut(s)	546, 738
MboI	GATC	2 cut(s)	544, 736
MboII	GAAGA	5 cut(s)	416, 539, 740, 743, 766
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	4 cut(s)	269, 482, 507, 530
MluCI	AATT	6 cut(s)	26, 59, 312, 395, 574, 661
MmeI	TCCRAC	1 cut(s)	239
Mph1103I	ATGCAT	1 cut(s)	614
MseI	TTAA	2 cut(s)	291, 761
MslI	CAYNNNNRTG	1 cut(s)	523
NcoI	CCATGG	1 cut(s)	749
NdeII	GATC	2 cut(s)	544, 736
NlaIII	CATG	5 cut(s)	87, 216, 290, 616, 753
NlaIV	GGNNCC	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	743
NsiI	ATGCAT	1 cut(s)	614
NspI	RCATGY	2 cut(s)	87, 216
PciI	ACATGT	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	433
Ppu21I	YACGTR	2 cut(s)	446, 477
PscI	ACATGT	1 cut(s)	83
PshAI	GACNNNNGTC	1 cut(s)	457
PspFI	CCCAGC	2 cut(s)	98, 462
PspN4I	GGNNCC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	371
PsrI	GAACNNNNNNTAC	2 cut(s)	399, 431
PsuI	RGATCY	1 cut(s)	544
RsaI	GTAC	2 cut(s)	448, 475
RsaNI	GTAC	2 cut(s)	447, 474
RseI	CAYNNNNRTG	1 cut(s)	523
SaqAI	TTAA	2 cut(s)	291, 761
SatI	GCNGC	1 cut(s)	432
Sau3AI	GATC	2 cut(s)	544, 736
Sau96I	GGNCC	1 cut(s)	371
SduI	GDGCHC	4 cut(s)	269, 482, 507, 530
SfcI	CTRYAG	1 cut(s)	678
SinI	GGWCC	1 cut(s)	371
SmiMI	CAYNNNNRTG	1 cut(s)	523
SmlI	CTYRAG	1 cut(s)	538
SmoI	CTYRAG	1 cut(s)	538
SnaBI	TACGTA	1 cut(s)	446
Sse9I	AATT	6 cut(s)	26, 59, 312, 395, 574, 661
SsiI	CCGC	1 cut(s)	432
StyI	CCWWGG	2 cut(s)	557, 749
TaaI	ACNGT	3 cut(s)	257, 709, 724
TaiI	ACGT	4 cut(s)	283, 448, 479, 569
TaqI	TCGA	1 cut(s)	451
TaqII	GACCGA	1 cut(s)	388
TasI	AATT	6 cut(s)	26, 59, 312, 395, 574, 661
TauI	GCSGC	1 cut(s)	434
Tru1I	TTAA	2 cut(s)	291, 761
Tru9I	TTAA	2 cut(s)	291, 761
TscAI	CASTG	1 cut(s)	729
TseFI	GTSAC	1 cut(s)	743
Tsp45I	GTSAC	1 cut(s)	743
TspDTI	ATGAA	2 cut(s)	275, 662
TspRI	CASTG	1 cut(s)	729
VneI	GTGCAC	1 cut(s)	526
VpaK11BI	GGWCC	1 cut(s)	371
XapI	RAATTY	5 cut(s)	26, 59, 312, 574, 661
XceI	RCATGY	2 cut(s)	87, 216
Zsp2I	ATGCAT	1 cut(s)	614

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.